jgi.p|Nanoce1779_2|71969, mRNA_5569 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|71969
Unique Name	mRNA_5569
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1285
Alignment location	scaffold_13:789525..790949 +

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Properties


Property Name	Value
TranscriptId	72055
Track	FilteredModels2
ProteinId	71969

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:789525..790949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|71969	gene_5569	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|71969	mRNA_5569-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5569	CDS_5569	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:789525..790949+
coding sequence from alignment at scaffold_13:789525..790949+

mRNA sequence

>mRNA_5569 ID=mRNA_5569|Name=jgi.p|Nanoce1779_2|71969|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
GGGGACTGGAGCCATGGGTGCGGCGTCTACCCTGCAGTCGATTTTTTTTT
AATTGAATTTCGGCCAGTGTTGGTGAGACGAGGAAGAAAGGGGAAGGAGG
AGTGGGAACGGGATAGGAAGAGAATGAAACGTCGCTTAACTTATACTCAT
ACCTTCCTCTCTCCCTCCCTTCCTCCCTTTCTCCCTCAGTTTCTCGGCCC
ACTGGTGCACGCCACCATTTCCCTCCAGAAGGCCCTTCCCAAGTACCGCT
ACAATTTTCCGTCCGCTCCCGCGAAGGATACCGCTGACTTCGTCTTGCGC
GCTACTTCTGCTGCCGCTGCTGGACCCCTGCCTCTTATGACAGGAGCAGC
GGCAGCGGCAGTGGCTGCTGCTCGGGGGAAGGGGATGATGGAGGTGGAAG
GGGGGGCAGGAAAGGAGGAGGAGGAGAGAGGAAAAAAGGGAGGGGAGGTG
CGGCTCTTTGTGGCAGCGACACCGTTTGTGGTGCCTTTGGCCAAGTTTTT
GAATCGCTTTGTGGCGGAGCAGGAGTGCTCGGATCAGGTCATCTCCTTCT
TCCTCGAGCCGACCAATCTCACTTCCGCTCCCATCGTCCACCTCCTCCTA
TCCGTTCTCCAAACCCCGGAAGCTGAGGACTTGCGCTTCCTCTTCCTTTC
CTCCCCGAGCCTGCATACCCTGCTTACCGTAGCCTTCGGCGTGGATAGAA
GTATGCTCCCAGGCACTGAGGCAGGGAAGGAAGACTGGCCTCTGCTCAAG
CCCCACAAGGACGGGTGGACGGTGGAGAAGCTGAAGGAGGAGAGGGCGAA
GGTCGACACTGGTGTGCTTACCCACCACGGCCTCCTCCTCCTCACTACCC
TCTTACACATGGAGAGCGAGGGCGGGGGAGAAGCTGGGCTGCTTTCTACG
CGCGAGACTCCCGTGATGCAGGCCCTCCACTACCTCTGGTCGCTCCACCG
ACCTTCCGCCTTCTCTTCCTCCACCATCATCTATTACGGCGCTCCGTCCA
TGCACCCTCCCTCAGTGCTGGACATTCCCCACACGCGGGCACAGGCGGAT
CAGGTCCTGATTCTGGAATGCTTGCTTCTATACTCCAAGGACCACCCCAC
GGATAGCGACGGGCTAGTGTCTCTTTTGGAGGTGTTTACCCGGCCGACAT
TCACGGGTACGGAGGGAGGGACGGAGGAAGGGAAGGAGGGACCCGACGAC
CTTTCAATTTAATTATTCACGCAAATAATCTTTCTTAGTCTTTGCCTCCC
TTCCTTCCCTCCCTCCAGACCTGACCTTCGTCCGC

protein sequence of jgi.p|Nanoce1779_2|71969

>mRNA_5569-protein ID=mRNA_5569-protein|Name=jgi.p|Nanoce1779_2|71969|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MKRRLTYTHTFLSPSLPPFLPQFLGPLVHATISLQKALPKYRYNFPSAPA
KDTADFVLRATSAAAAGPLPLMTGAAAAAVAAARGKGMMEVEGGAGKEEE
ERGKKGGEVRLFVAATPFVVPLAKFLNRFVAEQECSDQVISFFLEPTNLT
SAPIVHLLLSVLQTPEAEDLRFLFLSSPSLHTLLTVAFGVDRSMLPGTEA
GKEDWPLLKPHKDGWTVEKLKEERAKVDTGVLTHHGLLLLTTLLHMESEG
GGEAGLLSTRETPVMQALHYLWSLHRPSAFSSSTIIYYGAPSMHPPSVLD
IPHTRAQADQVLILECLLLYSKDHPTDSDGLVSLLEVFTRPTFTGTEGGT
EEGKEGPDDLSI*

mRNA from alignment at scaffold_13:789525..790949+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5569 ID=mRNA_5569|Name=jgi.p|Nanoce1779_2|71969|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp|location=Sequence derived from alignment at scaffold_13:789525..790949+ (Nannochloropsis oceanica)
GGGGACTGGAGCCATGGGTGCGGCGTCTACCCTGCAGTCGATTTTTTTTT
AATTGAATTTCGGCCAGTGTTGGTGAGACGAGGAAGAAAGGGGAAGGAGG
AGTGGGAACGGGATAGGAAGAGAATGAAACGTCGCTTAACTTATACTCAT
ACCTTCCTCTCTCCCTCCCTTCCTCCCTTTCTCCCTCAGTTTCTCGGCCC
ACTGGTGCACGCCACCATTTCCCTCCAGAAGGCCCTTCCCAAGTACCGCT
ACAATTTTCCGTCCGCTCCCGCGAAGGATACCGCTGACTTCGTCTTGCGC
GCTACTTCTGCTGCCGCTGCTGGACCCCTGCCTCTTATGACAGGAGCAGC
GGCAGCGGCAGTGGCTGCTGCTCGGGGGAAGGGGATGATGGAGGTGGAAG
GGGGGGCAGGAAAGGAGGAGGAGGAGAGAGGAAAAAAGGGAGGGGAGGTG
CGGCTCTTTGTGGCAGCGACACCGTTTGTGGTGCCTTTGGCCAAGTTTTT
GAATCGCTTTGTGGCGGAGCAGGAGTGCTCGGATCAGGTAGGCAAGGAAG
AAAGGAGGGGCCGAGGGACGGATGGGGAAGGATGTAAAATGATCATGTTC
TTTTCGCTTTCTTTGATACTTCCAAACTAATTTTACCCGTTCTCCCTCCC
TCCCTCTCTCCCTCCCTTCCATCCCAGGTCATCTCCTTCTTCCTCGAGCC
GACCAATCTCACTTCCGCTCCCATCGTCCACCTCCTCCTATCCGTTCTCC
AAACCCCGGAAGCTGAGGACTTGCGCTTCCTCTTCCTTTCCTCCCCGAGC
CTGCATACCCTGCTTACCGTAGCCTTCGGCGTGGATAGAAGTATGCTCCC
AGGCACTGAGGCAGGGAAGGAAGACTGGCCTCTGCTCAAGCCCCACAAGG
ACGGGTGGACGGTGGAGAAGCTGAAGGAGGAGAGGGCGAAGGTCGACACT
GGTGTGCTTACCCACCACGGCCTCCTCCTCCTCACTACCCTCTTACACAT
GGAGAGCGAGGGCGGGGGAGAAGCTGGGCTGCTTTCTACGCGCGAGACTC
CCGTGATGCAGGCCCTCCACTACCTCTGGTCGCTCCACCGACCTTCCGCC
TTCTCTTCCTCCACCATCATCTATTACGGCGCTCCGTCCATGCACCCTCC
CTCAGTGCTGGACATTCCCCACACGCGGGCACAGGCGGATCAGGTCCTGA
TTCTGGAATGCTTGCTTCTATACTCCAAGGACCACCCCACGGATAGCGAC
GGGCTAGTGTCTCTTTTGGAGGTGTTTACCCGGCCGACATTCACGGGTAC
GGAGGGAGGGACGGAGGAAGGGAAGGAGGGACCCGACGACCTTTCAATTT
AATTATTCACGCAAATAATCTTTCTTAGTCTTTGCCTCCCTTCCTTCCCT
CCCTCCAGACCTGACCTTCGTCCGC

Coding sequence (CDS) from alignment at scaffold_13:789525..790949+

>mRNA_5569 ID=mRNA_5569|Name=jgi.p|Nanoce1779_2|71969|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_13:789525..790949+ (Nannochloropsis oceanica)
ATGAAACGTCGCTTAACTTATACTCATACCTTCCTCTCTCCCTCCCTTCC
TCCCTTTCTCCCTCAGTTTCTCGGCCCACTGGTGCACGCCACCATTTCCC
TCCAGAAGGCCCTTCCCAAGTACCGCTACAATTTTCCGTCCGCTCCCGCG
AAGGATACCGCTGACTTCGTCTTGCGCGCTACTTCTGCTGCCGCTGCTGG
ACCCCTGCCTCTTATGACAGGAGCAGCGGCAGCGGCAGTGGCTGCTGCTC
GGGGGAAGGGGATGATGGAGGTGGAAGGGGGGGCAGGAAAGGAGGAGGAG
GAGAGAGGAAAAAAGGGAGGGGAGGTGCGGCTCTTTGTGGCAGCGACACC
GTTTGTGGTGCCTTTGGCCAAGTTTTTGAATCGCTTTGTGGCGGAGCAGG
AGTGCTCGGATCAGGTCATCTCCTTCTTCCTCGAGCCGACCAATCTCACT
TCCGCTCCCATCGTCCACCTCCTCCTATCCGTTCTCCAAACCCCGGAAGC
TGAGGACTTGCGCTTCCTCTTCCTTTCCTCCCCGAGCCTGCATACCCTGC
TTACCGTAGCCTTCGGCGTGGATAGAAGTATGCTCCCAGGCACTGAGGCA
GGGAAGGAAGACTGGCCTCTGCTCAAGCCCCACAAGGACGGGTGGACGGT
GGAGAAGCTGAAGGAGGAGAGGGCGAAGGTCGACACTGGTGTGCTTACCC
ACCACGGCCTCCTCCTCCTCACTACCCTCTTACACATGGAGAGCGAGGGC
GGGGGAGAAGCTGGGCTGCTTTCTACGCGCGAGACTCCCGTGATGCAGGC
CCTCCACTACCTCTGGTCGCTCCACCGACCTTCCGCCTTCTCTTCCTCCA
CCATCATCTATTACGGCGCTCCGTCCATGCACCCTCCCTCAGTGCTGGAC
ATTCCCCACACGCGGGCACAGGCGGATCAGGTCCTGATTCTGGAATGCTT
GCTTCTATACTCCAAGGACCACCCCACGGATAGCGACGGGCTAGTGTCTC
TTTTGGAGGTGTTTACCCGGCCGACATTCACGGGTACGGAGGGAGGGACG
GAGGAAGGGAAGGAGGGACCCGACGACCTTTCAATTTAAATGAAACGTCG
CTTAACTTATACTCATACCTTCCTCTCTCCCTCCCTTCCTCCCTTTCTCC
CTCAGTTTCTCGGCCCACTGGTGCACGCCACCATTTCCCTCCAGAAGGCC
CTTCCCAAGTACCGCTACAATTTTCCGTCCGCTCCCGCGAAGGATACCGC
TGACTTCGTCTTGCGCGCTACTTCTGCTGCCGCTGCTGGACCCCTGCCTC
TTATGACAGGAGCAGCGGCAGCGGCAGTGGCTGCTGCTCGGGGGAAGGGG
ATGATGGAGGTGGAAGGGGGGGCAGGAAAGGAGGAGGAGGAGAGAGGAAA
AAAGGGAGGGGAGGTGCGGCTCTTTGTGGCAGCGACACCGTTTGTGGTGC
CTTTGGCCAAGTTTTTGAATCGCTTTGTGGCGGAGCAGGAGTGCTCGGAT
CAGGTCATCTCCTTCTTCCTCGAGCCGACCAATCTCACTTCCGCTCCCAT
CGTCCACCTCCTCCTATCCGTTCTCCAAACCCCGGAAGCTGAGGACTTGC
GCTTCCTCTTCCTTTCCTCCCCGAGCCTGCATACCCTGCTTACCGTAGCC
TTCGGCGTGGATAGAAGTATGCTCCCAGGCACTGAGGCAGGGAAGGAAGA
CTGGCCTCTGCTCAAGCCCCACAAGGACGGGTGGACGGTGGAGAAGCTGA
AGGAGGAGAGGGCGAAGGTCGACACTGGTGTGCTTACCCACCACGGCCTC
CTCCTCCTCACTACCCTCTTACACATGGAGAGCGAGGGCGGGGGAGAAGC
TGGGCTGCTTTCTACGCGCGAGACTCCCGTGATGCAGGCCCTCCACTACC
TCTGGTCGCTCCACCGACCTTCCGCCTTCTCTTCCTCCACCATCATCTAT
TACGGCGCTCCGTCCATGCACCCTCCCTCAGTGCTGGACATTCCCCACAC
GCGGGCACAGGCGGATCAGGTCCTGATTCTGGAATGCTTGCTTCTATACT
CCAAGGACCACCCCACGGATAGCGACGGGCTAGTGTCTCTTTTGGAGGTG
TTTACCCGGCCGACATTCACGGGTACGGAGGGAGGGACGGAGGAAGGGAA
GGAGGGACCCGACGACCTTTCAATTTAA

Synonyms

Publications