jgi.p|Nanoce1779_2|592173, mRNA_5334 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592173
Unique NamemRNA_5334
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length353
Alignment locationscaffold_13:191183..191989 -

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Properties
Property NameValue
TranscriptId592259
TrackFilteredModels2
ProteinId592173
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:191183..191989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592173gene_5334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592173mRNA_5334-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5334CDS_5334Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5334 ID=mRNA_5334|Name=jgi.p|Nanoce1779_2|592173|organism=Nannochloropsis oceanica|type=mRNA|length=353bp
ACAGGGAGACCAAAATCATGATCGAGGTCATTCTCAATGACCGGCTGGGC
AAGAAGATCCGGGTCAAATGCAACGAGGATGATACCATCGGAGACCTGAA
AAAGCTGGTGGCGGCTCAAACAGGCACACGACCAGAGAAGATTCGCATCC
AAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGATTACGAG
ATTAGTGAGGGCATGTCACTGGAGCTGTACTACTCGTAAAAATTCAGGGA
GGCGGAGACACGCACAAGGGAAAAGGAAAGCCGAAATCAAAGTAATACAG
AGAAGAAACACCAACAACAAAGCAAATGCGAACCACCCGGCCATTCGTAT
GTA
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protein sequence of jgi.p|Nanoce1779_2|592173

>mRNA_5334-protein ID=mRNA_5334-protein|Name=jgi.p|Nanoce1779_2|592173|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTV
YKDHITLADYEISEGMSLELYYS*
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mRNA from alignment at scaffold_13:191183..191989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5334 ID=mRNA_5334|Name=jgi.p|Nanoce1779_2|592173|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_13:191183..191989- (Nannochloropsis oceanica)
ACAGGGAGACCAAAATCATGATCGAGGTCATTCTCAATGACCGGCTGGGC
AAGAAGATCCGGGTCAAATGCAACGAGGATGATACCATCGGAGACCTGAA
AAAGCTGGTGGCGGCTCAAACAGGTGGGAGCTTGGTCTTTGACCGGTGTC
GATCAAGAGATGCTATTCGCGGAGGGAGACGTGACGCGGTCTTGTGTGTA
TAAGAGGGCTGGTGCAGTGGCCGAGAACGGAAGGGCCGAAGAACGGAAGA
AGCATATTTTGATTGTGCCCCCGAACTACGTCTCCGCGTGGCATGCGCGT
GGCATGCATGATTAGATAGACTCCTTGCGTTTCATCACACGCCTTTTGCT
GACCTACAGTTACCCCGCACGCCTCTCACCACTTTTTCCAGGCACACGAC
CAGAGAAGATTCGCATCCAAAAGTGGTACACTGTCTACAAAGATCACATC
ACACTCGCTGATTACGAGATTAGTGAGGTACGATGTCTCGCTGACGGAGA
GGTGTCCGTCCGGTTGGGGAAGAGAATTTAATTGCAAAGCAAGTTCACAA
GACAGGAAATAAAGGTCTGGATCGACTCAATTGACCATCACGACATCCAT
AATTTTGTGTCCTCCACCATCATTACCCCTGCTCCCTCCCCGTCCTCCCT
TTTCTCGACACAGGGCATGTCACTGGAGCTGTACTACTCGTAAAAATTCA
GGGAGGCGGAGACACGCACAAGGGAAAAGGAAAGCCGAAATCAAAGTAAT
ACAGAGAAGAAACACCAACAACAAAGCAAATGCGAACCACCCGGCCATTC
GTATGTA
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Coding sequence (CDS) from alignment at scaffold_13:191183..191989-

>mRNA_5334 ID=mRNA_5334|Name=jgi.p|Nanoce1779_2|592173|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_13:191183..191989- (Nannochloropsis oceanica)
GGCATGTCACTGGAGCTGTACTACTCGTAAGCACACGACCAGAGAAGATT
CGCATCCAAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGA
TTACGAGATTAGTGAGATGATCGAGGTCATTCTCAATGACCGGCTGGGCA
AGAAGATCCGGGTCAAATGCAACGAGGATGATACCATCGGAGACCTGAAA
AAGCTGGTGGCGGCTCAAACAGGGCATGTCACTGGAGCTGTACTACTCGT
AAGCACACGACCAGAGAAGATTCGCATCCAAAAGTGGTACACTGTCTACA
AAGATCACATCACACTCGCTGATTACGAGATTAGTGAGATGATCGAGGTC
ATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAAATGCAACGAGGA
TGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTCAAACAGGGCATG
TCACTGGAGCTGTACTACTCGTAAGCACACGACCAGAGAAGATTCGCATC
CAAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGATTACGA
GATTAGTGAGATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGA
TCCGGGTCAAATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTG
GTGGCGGCTCAAACAG
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Synonyms
Publications