jgi.p|Nanoce1779_2|592263, mRNA_5362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592263
Unique NamemRNA_5362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1796
Alignment locationscaffold_13:248101..249896 -

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Properties
Property NameValue
TranscriptId592349
TrackFilteredModels2
ProteinId592263
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:248101..249896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592263gene_5362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592263mRNA_5362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5362CDS_5362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5362 ID=mRNA_5362|Name=jgi.p|Nanoce1779_2|592263|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp
ACAGGCAAATAAATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGT
TGGTAGAGGCAGCAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGA
GGACCTCAAAAACCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACG
ATCCTCACTCCCTTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTA
CGAGGGAGAGTTGGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGC
TTAAGACCAAGCTGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTG
GAGGCGGCGCGTTCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGA
GTCGGAAGGCCCCATGGAGCAGACATGGAGACTTACACAACGTGACCTGA
AGAAGCATGTAGACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTG
CCGACGCTGGGGCCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTT
GCTCCTGGGGGGGCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGA
TGAACGGGACCCGCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGT
TTTTTGCACAATGAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTA
CATTTACGATAACCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCG
ACCCGATGCGCCTGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTC
GGCCGGGCAGGCTGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGT
GGCAGAGTATGGCACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACC
CGCACAATGGCGTGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTG
TGGAGTCCAGTCATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGG
ACCCGTCACAGGCATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGG
CGGGGATGGACGGGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAG
CTGCACCACTACCAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCA
GAAGGGTTTGCTCGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGG
ACGCTCTTGCTCAAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCT
GGCAATGCGCTGGACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGG
CTTGGGTCACAAGAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAG
AGCCCAACTTCGACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAG
CGACGTGAGGCGGAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGAC
GATTGCATTGAACCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGG
TTTTGATCCGGGAGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCT
GCCAAGCCTAAGAAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACG
TAAAAAACTGAAGCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGC
TGCTGAAACAGAAAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAG
GAGACAGACACTCGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCA
GCGCTTTTTTTGATAGGAAAATAAAGAAAGCTTGTGTGCACGAAGGGAGA
GATGTAGATATTTCAAGAAAGAAAACATAATAAATATCAGAGGCAA
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protein sequence of jgi.p|Nanoce1779_2|592263

>mRNA_5362-protein ID=mRNA_5362-protein|Name=jgi.p|Nanoce1779_2|592263|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MFKATEESGNGRVGRGSNSGNNYFMATGKRTSKTGNKRMLPKPHKTILTP
LERQLDAKAKVLYEGELGANVVSKLTDKRLKTKLKQSEKKFKEAALEAAR
SEMLLPQEAGYLESEGPMEQTWRLTQRDLKKHVDLQTASQIFSLDLPTLG
PYTLDWALNGRHLLLGGRHGHVALIDAQRMNGTRELNLREPVRDVSFLHN
EGMFAVAQKKYVYIYDNQGLELHCLRGHIDPMRLVFLPYHFLLASVGRAG
WLKYQDVSTGQLVAEYGTKKGVCQAMRQNPHNGVVHLGHPNGVVSLWSPV
MSQPLVSILCHRGPVTGIAVDREGRYMASAGMDGEVKLWDLRVYKQLHHY
QFTSPPSSVDISQKGLLAVGFGSHVTVWKDALAQKVRSPYLRHDTPGNAL
DTVRFRPYEDVLGLGHKRGYVSMVVPGAGEPNFDTLEANPFQTRKQRREA
EVHGLLDKLAPETIALNPTTVGAVDLQPEVLIREQRELMEQADRRPAKPK
KDKNRMRGKSKLRKKLKRKQKNVVDEKTVLLKQKIDKAREEAKQKKETDT
RNRQAEEAPRALQRFF*
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mRNA from alignment at scaffold_13:248101..249896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5362 ID=mRNA_5362|Name=jgi.p|Nanoce1779_2|592263|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp|location=Sequence derived from alignment at scaffold_13:248101..249896- (Nannochloropsis oceanica)
ACAGGCAAATAAATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGT
TGGTAGAGGCAGCAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGA
GGACCTCAAAAACCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACG
ATCCTCACTCCCTTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTA
CGAGGGAGAGTTGGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGC
TTAAGACCAAGCTGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTG
GAGGCGGCGCGTTCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGA
GTCGGAAGGCCCCATGGAGCAGACATGGAGACTTACACAACGTGACCTGA
AGAAGCATGTAGACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTG
CCGACGCTGGGGCCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTT
GCTCCTGGGGGGGCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGA
TGAACGGGACCCGCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGT
TTTTTGCACAATGAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTA
CATTTACGATAACCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCG
ACCCGATGCGCCTGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTC
GGCCGGGCAGGCTGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGT
GGCAGAGTATGGCACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACC
CGCACAATGGCGTGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTG
TGGAGTCCAGTCATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGG
ACCCGTCACAGGCATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGG
CGGGGATGGACGGGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAG
CTGCACCACTACCAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCA
GAAGGGTTTGCTCGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGG
ACGCTCTTGCTCAAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCT
GGCAATGCGCTGGACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGG
CTTGGGTCACAAGAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAG
AGCCCAACTTCGACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAG
CGACGTGAGGCGGAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGAC
GATTGCATTGAACCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGG
TTTTGATCCGGGAGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCT
GCCAAGCCTAAGAAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACG
TAAAAAACTGAAGCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGC
TGCTGAAACAGAAAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAG
GAGACAGACACTCGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCA
GCGCTTTTTTTGATAGGAAAATAAAGAAAGCTTGTGTGCACGAAGGGAGA
GATGTAGATATTTCAAGAAAGAAAACATAATAAATATCAGAGGCAA
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Coding sequence (CDS) from alignment at scaffold_13:248101..249896-

>mRNA_5362 ID=mRNA_5362|Name=jgi.p|Nanoce1779_2|592263|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_13:248101..249896- (Nannochloropsis oceanica)
ATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGTTGGTAGAGGCAG
CAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGAGGACCTCAAAAA
CCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACGATCCTCACTCCC
TTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTACGAGGGAGAGTT
GGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGCTTAAGACCAAGC
TGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTGGAGGCGGCGCGT
TCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGAGTCGGAAGGCCC
CATGGAGCAGACATGGAGACTTACACAACGTGACCTGAAGAAGCATGTAG
ACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTGCCGACGCTGGGG
CCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTTGCTCCTGGGGGG
GCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGATGAACGGGACCC
GCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGTTTTTTGCACAAT
GAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTACATTTACGATAA
CCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCGACCCGATGCGCC
TGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTCGGCCGGGCAGGC
TGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGTGGCAGAGTATGG
CACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACCCGCACAATGGCG
TGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTGTGGAGTCCAGTC
ATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGGACCCGTCACAGG
CATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGGCGGGGATGGACG
GGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAGCTGCACCACTAC
CAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCAGAAGGGTTTGCT
CGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGGACGCTCTTGCTC
AAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCTGGCAATGCGCTG
GACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGGCTTGGGTCACAA
GAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAGAGCCCAACTTCG
ACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAGCGACGTGAGGCG
GAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGACGATTGCATTGAA
CCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGGTTTTGATCCGGG
AGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCTGCCAAGCCTAAG
AAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACGTAAAAAACTGAA
GCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGCTGCTGAAACAGA
AAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAGGAGACAGACACT
CGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCAGCGCTTTTTTTG
A
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Synonyms
Publications