jgi.p|Nanoce1779_2|592312, mRNA_5376 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592312
Unique NamemRNA_5376
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length989
Alignment locationscaffold_13:285989..286977 +

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Properties
Property NameValue
TranscriptId592398
TrackFilteredModels2
ProteinId592312
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:285989..286977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592312gene_5376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592312mRNA_5376-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5376CDS_5376Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5376 ID=mRNA_5376|Name=jgi.p|Nanoce1779_2|592312|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
GAAGGGCCAAATTGAAAGATATATCAATTATCTGTACAAATGACTGAGTC
ATTACTCGAAACATCACAAAGCTGTTTTTAAAAGTTGTGGGATAGCTGGA
GGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTCACTCCCCTT
ACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAGAAGGAAGGT
GTCAATGAGGCACCGTCATGCGTCTAAGTGCAGATATTGTGCTCATGTGC
CAACTACATCAGGCACAACATGGAGTTGCCGTGTGACAAACAACAGTTTT
CTGTACCCTCCGGTCAGAGCGACAACTTTGGCGCCGCCGGTGTCCAGGTC
TCTATCTCCGCCCCTGCCCCACAACGCTACCGTAGCAAATACCGCCTCTT
GGCCTGTCATCGGGATGATGCACCTGCCAAGACCAACGAAGTACGCGTCA
CCTACCAAGGACCAGTTAAGAGTTACCTGGGCTATGCCATGGCCCTGTTC
GAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGGAGGGCCAT
CCACAAGGCCTTGACGGTTGCCGAAATTTTGAAACGCAGCTTGCCTGGAC
TCCATCAACGCACTGAAATTGGATCCCTGCCGTTCAAAGAGGTGTGGGCA
CCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGACGCGTTACATTTCTTC
AGTCCTGATCACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCCATT
TTTTCCGAATAATCGTCCAACGTGCGTTAAGACTTGAAGGGGGCGGATCG
GTCAGCCATATGAGAAGCGGCCATAAAGAGGACTCCCCTTGGTCCCTATG
ATCCCCCCCCCTCTTTTTTTACACACTCACTCTATTTCACAACACTTTCG
TCCCCTTCTCTTCTCGTTCTCTCCCTTACAACATGACTTTGTTTTCCTTT
CTCTATGCCCACACTGCATCCCTCCCTTTTATCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|592312

>mRNA_5376-protein ID=mRNA_5376-protein|Name=jgi.p|Nanoce1779_2|592312|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MELPCDKQQFSVPSGQSDNFGAAGVQVSISAPAPQRYRSKYRLLACHRDD
APAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTV
AEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSVLITLS
KDPPPLDIRHFFRIIVQRALRLEGGGSVSHMRSGHKEDSPWSL*
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mRNA from alignment at scaffold_13:285989..286977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5376 ID=mRNA_5376|Name=jgi.p|Nanoce1779_2|592312|organism=Nannochloropsis oceanica|type=mRNA|length=989bp|location=Sequence derived from alignment at scaffold_13:285989..286977+ (Nannochloropsis oceanica)
GAAGGGCCAAATTGAAAGATATATCAATTATCTGTACAAATGACTGAGTC
ATTACTCGAAACATCACAAAGCTGTTTTTAAAAGTTGTGGGATAGCTGGA
GGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTCACTCCCCTT
ACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAGAAGGAAGGT
GTCAATGAGGCACCGTCATGCGTCTAAGTGCAGATATTGTGCTCATGTGC
CAACTACATCAGGCACAACATGGAGTTGCCGTGTGACAAACAACAGTTTT
CTGTACCCTCCGGTCAGAGCGACAACTTTGGCGCCGCCGGTGTCCAGGTC
TCTATCTCCGCCCCTGCCCCACAACGCTACCGTAGCAAATACCGCCTCTT
GGCCTGTCATCGGGATGATGCACCTGCCAAGACCAACGAAGTACGCGTCA
CCTACCAAGGACCAGTTAAGAGTTACCTGGGCTATGCCATGGCCCTGTTC
GAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGGAGGGCCAT
CCACAAGGCCTTGACGGTTGCCGAAATTTTGAAACGCAGCTTGCCTGGAC
TCCATCAACGCACTGAAATTGGATCCCTGCCGTTCAAAGAGGTGTGGGCA
CCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGACGCGTTACATTTCTTC
AGTCCTGATCACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCCATT
TTTTCCGAATAATCGTCCAACGTGCGTTAAGACTTGAAGGGGGCGGATCG
GTCAGCCATATGAGAAGCGGCCATAAAGAGGACTCCCCTTGGTCCCTATG
ATCCCCCCCCCTCTTTTTTTACACACTCACTCTATTTCACAACACTTTCG
TCCCCTTCTCTTCTCGTTCTCTCCCTTACAACATGACTTTGTTTTCCTTT
CTCTATGCCCACACTGCATCCCTCCCTTTTATCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_13:285989..286977+

>mRNA_5376 ID=mRNA_5376|Name=jgi.p|Nanoce1779_2|592312|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_13:285989..286977+ (Nannochloropsis oceanica)
ATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCTCCGGTCAGAG
CGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCCGCCCCTGCCC
CACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCATCGGGATGAT
GCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAGGACCAGTTAA
GAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGG
CCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGCCTTGACGGTT
GCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAACGCACTGAAAT
TGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGA
ATCGCGTCGAGTCGACGCGTTACATTTCTTCAGTCCTGATCACGCTATCG
AAAGATCCTCCTCCCCTCGACATTCGCCATTTTTTCCGAATAATCGTCCA
ACGTGCGTTAAGACTTGAAGGGGGCGGATCGGTCAGCCATATGAGAAGCG
GCCATAAAGAGGACTCCCCTTGGTCCCTATGA
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Synonyms
Publications