jgi.p|Nanoce1779_2|593112, mRNA_5915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593112
Unique NamemRNA_5915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_14:46589..47559 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593198
TrackFilteredModels2
ProteinId593112
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:46589..47559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593112gene_5915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593112mRNA_5915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5915CDS_5915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5915 ID=mRNA_5915|Name=jgi.p|Nanoce1779_2|593112|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
CCCCCCCCCCCCCTCCCCTTCCTCCTCTTCCTCTGAAGAAGACTCCTCCT
CGCTCGAGCCTCCCCCCGCTTCCAATCGTGCCTCCCGGGCCTCCCTCGCC
GCCTCCCTCTCCCTCATTATCTTCCTCGCCGTTGCAAACGGGCCACACCA
CTCCTCCTTCTCCTCCCCCTCCCTTCCTCCCTTCTTCCCGCCCTCCTCCT
CCTTCCTTTTCGTCCTCTTCTTCTTCTTCTCCTCCAATGCCGGTAGAGGC
ATCGAACTCCGCACCGACCGTCCCACCTGCCCTGACCCCCCTCTTTCCTC
CAGCCCTCCCCCTGACATGGCCTGTGGCACTGCACGGTCGCCAGCATCGG
CACGGGCAAAGAAGGCAGCCCGGCTCTCAGCCACCCGACGCATGGACTCC
TTCCGTCCTCCTCCTGCTCCTCCTCGCCCCCCTCCGTTTTTTCCTTCTTC
TGCTCTTACTTTCCCTTTGCCTTTTTCCTGGCTTCTGCTGCTGGCATTTG
CCTTGGTAGACGTTTCCTCTTCTGCCTGCTCCTCTTTCTCTTCTTCTTCT
TCTTTTTCCTTCTTCTCCTCCTCCTCTTCCTCCGTCTTCACCTTCATTCC
ATTCCCTCCCCCGTTGCCGCCAACAACGCTTCTGCTGCGGAGAGGTCTCT
TGATAGGGACTAAACCAGCTGCAGCAGCGACAGCAGCAGCCACACCCGAG
GCAAAAGAGGGGCCGGATGAAGTCGAGAAAGAAGAAAGGGTAGGTGCCAT
GTCCTCCCCGGCGCCCGCTTCCTTCTGCTGGCCCGGAGATTGCGTGCGTT
GCGTGATGGTCCGCTCATCATCGTCAGGGTCGTCTACCATCTCGGTAGCG
ACGGAAGCGCCCGGCGAAGACGCGGCAGCAGATGCGGGCACGGTCGCGGC
GGTCACTACGGTGGCTGTAGAGCCCTTGGCTTTCTTGGCAACACGTTCGC
CCGACATGCTTTAGTGCTCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|593112

>mRNA_5915-protein ID=mRNA_5915-protein|Name=jgi.p|Nanoce1779_2|593112|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MACGTARSPASARAKKAARLSATRRMDSFRPPPAPPRPPPFFPSSALTFP
LPFSWLLLLAFALVDVSSSACSSFSSSSSFSFFSSSSSSVFTFIPFPPPL
PPTTLLLRRGLLIGTKPAAAATAAATPEAKEGPDEVEKEERVGAMSSPAP
ASFCWPGDCVRCVMVRSSSSGSSTISVATEAPGEDAAADAGTVAAVTTVA
VEPLAFLATRSPDML*
back to top

mRNA from alignment at scaffold_14:46589..47559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5915 ID=mRNA_5915|Name=jgi.p|Nanoce1779_2|593112|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at scaffold_14:46589..47559- (Nannochloropsis oceanica)
CCCCCCCCCCCCCTCCCCTTCCTCCTCTTCCTCTGAAGAAGACTCCTCCT
CGCTCGAGCCTCCCCCCGCTTCCAATCGTGCCTCCCGGGCCTCCCTCGCC
GCCTCCCTCTCCCTCATTATCTTCCTCGCCGTTGCAAACGGGCCACACCA
CTCCTCCTTCTCCTCCCCCTCCCTTCCTCCCTTCTTCCCGCCCTCCTCCT
CCTTCCTTTTCGTCCTCTTCTTCTTCTTCTCCTCCAATGCCGGTAGAGGC
ATCGAACTCCGCACCGACCGTCCCACCTGCCCTGACCCCCCTCTTTCCTC
CAGCCCTCCCCCTGACATGGCCTGTGGCACTGCACGGTCGCCAGCATCGG
CACGGGCAAAGAAGGCAGCCCGGCTCTCAGCCACCCGACGCATGGACTCC
TTCCGTCCTCCTCCTGCTCCTCCTCGCCCCCCTCCGTTTTTTCCTTCTTC
TGCTCTTACTTTCCCTTTGCCTTTTTCCTGGCTTCTGCTGCTGGCATTTG
CCTTGGTAGACGTTTCCTCTTCTGCCTGCTCCTCTTTCTCTTCTTCTTCT
TCTTTTTCCTTCTTCTCCTCCTCCTCTTCCTCCGTCTTCACCTTCATTCC
ATTCCCTCCCCCGTTGCCGCCAACAACGCTTCTGCTGCGGAGAGGTCTCT
TGATAGGGACTAAACCAGCTGCAGCAGCGACAGCAGCAGCCACACCCGAG
GCAAAAGAGGGGCCGGATGAAGTCGAGAAAGAAGAAAGGGTAGGTGCCAT
GTCCTCCCCGGCGCCCGCTTCCTTCTGCTGGCCCGGAGATTGCGTGCGTT
GCGTGATGGTCCGCTCATCATCGTCAGGGTCGTCTACCATCTCGGTAGCG
ACGGAAGCGCCCGGCGAAGACGCGGCAGCAGATGCGGGCACGGTCGCGGC
GGTCACTACGGTGGCTGTAGAGCCCTTGGCTTTCTTGGCAACACGTTCGC
CCGACATGCTTTAGTGCTCTG
back to top

Coding sequence (CDS) from alignment at scaffold_14:46589..47559-

>mRNA_5915 ID=mRNA_5915|Name=jgi.p|Nanoce1779_2|593112|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_14:46589..47559- (Nannochloropsis oceanica)
ATGGCCTGTGGCACTGCACGGTCGCCAGCATCGGCACGGGCAAAGAAGGC
AGCCCGGCTCTCAGCCACCCGACGCATGGACTCCTTCCGTCCTCCTCCTG
CTCCTCCTCGCCCCCCTCCGTTTTTTCCTTCTTCTGCTCTTACTTTCCCT
TTGCCTTTTTCCTGGCTTCTGCTGCTGGCATTTGCCTTGGTAGACGTTTC
CTCTTCTGCCTGCTCCTCTTTCTCTTCTTCTTCTTCTTTTTCCTTCTTCT
CCTCCTCCTCTTCCTCCGTCTTCACCTTCATTCCATTCCCTCCCCCGTTG
CCGCCAACAACGCTTCTGCTGCGGAGAGGTCTCTTGATAGGGACTAAACC
AGCTGCAGCAGCGACAGCAGCAGCCACACCCGAGGCAAAAGAGGGGCCGG
ATGAAGTCGAGAAAGAAGAAAGGGTAGGTGCCATGTCCTCCCCGGCGCCC
GCTTCCTTCTGCTGGCCCGGAGATTGCGTGCGTTGCGTGATGGTCCGCTC
ATCATCGTCAGGGTCGTCTACCATCTCGGTAGCGACGGAAGCGCCCGGCG
AAGACGCGGCAGCAGATGCGGGCACGGTCGCGGCGGTCACTACGGTGGCT
GTAGAGCCCTTGGCTTTCTTGGCAACACGTTCGCCCGACATGCTTTAG
back to top
Synonyms
Publications