jgi.p|Nanoce1779_2|631407, mRNA_6231 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631407
Unique Name	mRNA_6231
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1644
Alignment location	scaffold_15:71938..73956 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631493
Track	FilteredModels2
ProteinId	631407

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:71938..73956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631407	gene_6231	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631407	mRNA_6231-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6231	CDS_6231	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:71938..73956+
coding sequence from alignment at scaffold_15:71938..73956+

mRNA sequence

>mRNA_6231 ID=mRNA_6231|Name=jgi.p|Nanoce1779_2|631407|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
AGCTACTTAGCAAAGCAGGCGCGGTCAAGGCTTCGACTTCCTCCCGCCAC
CATACAGATGCACTAGTTGCGTTCCTCGTCAATTGATGGGAAACGTCATT
AGCATCAACCGACGACGTGTCCTTCCTTTCATCCTCCTTCCTTTCTCACA
GGACAGCCCACGCCCAGCAAACACTCAGGGAGCCTCGATAGCAACAGAAA
CAGTAGGAGTAGTTGCAGTGGAAGGAGGCGATGGAGGGCCTGTTGACCTA
CCTTGACGAGGAGGAGGAGGAAGTCGGGGTAGAGGAGGGCAAAAAGGGTC
ATCTTTGGAGTTCCAGAAAGGAAGAGGGAGTCCGCCTGGAAGCGAACGAG
GAGACGGAGCGGTCGGGACTGCACTCTCTTGCCTCCTTTCCTACTCTTGC
CGCTTTCTCTCCTACCCTCCCTCAACTGTCTCTCCCTCCGGCTCCACCCC
CTTTTCCGGTTGCCTATACAAGCAAGGATACCACTGTCAGGCCTCGTCGG
GTGGGAAAAAAGTCAAGAAAGCGGCCACGGGATGGGAATGGAGGAGGGGG
AGGAGGGAGGGGTGTGAGATGGGCTGATGCAGCATTATTGGAGGAAATTT
TTCCATTCTTCACGGACCAACCAGTGGGTAGGTAAAGGAAGGGAAGGCGG
CAGGAGGAGAGGAAGGAAAGATGAGGGAAATGCCGTGCAGCCAGGCGAAG
CTGCGCATTGCTCCAGCGAGTACTTCTCATCCCTCATTGGACACATCACC
TCTTCCATTCTCTTCCCTCATGACCCCCCCCTTCCCTTTTAGACCCCACC
GCTCCTCCTATCGGAATGACACCCTCTGCATCCTCTTCCCGATCCTACTC
CTTCTCAAGCGACATGGAGGAAGACGAGGAGGCGGCTTCATCCTCTATGC
ATGGCCCAACATCCACAGGTCGCCCTTCCCTCTACCATTCCTCTTCCTCC
TCATCGAGCAACGGAGGAGGCGGCTTGAAGCACGCATCCTGGGAGACGGT
AGTTGTGACCCGGAAGAAGAAAAACAAACCTTTGGTCTCCCTACCCCTCA
TGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCTCTTCCTCGGAGGCAGAG
ACACCCGCAGCAGCTGCAGCAGGAAAGGGCAAGCTGTATGATCCTGCTGG
GTTTGAATTTTTCTGTGACGCGTGTCACTATACGTTGGTGGAAGGGGAAG
TAAGGTACGAATGCCAAGTATGTCCAAACGAGTTCTGCCTGTGCCGCTCA
TGCTTTGCTTCTCCGTCTTCCTCCTCTTCTTCGTCTTCAGCTATTTCTCA
CCCTCACCCTTGTGTGGCAAACACGCGGACGTACCACATTTCTTTCCTCG
TCAAGGACAAGAGGGACGGTGGAAGGGAGGAGGAAGATGGGGACAATAAC
GGGCACGATGAAGAGCAGAAAAGAGCTAAGGATGCACAGGAAGAGAAACA
AGAGGAGGAAGAAGAAGAGGAGGAGGATATAGGTCCTCTGTTGGGGTCAG
GGGGAGGGCCACGATTTGGTGGACTTACATATGCAGGCTCGTTGTGAGGG
AGGAGAGATGGAGATTCTAACTGTAGCTTCTTCGCACGTTATGCATTGCT
GCCTTTTGATTGTCATATCTTTGCTTCTTCTCGTTGTTGTTGCC

protein sequence of jgi.p|Nanoce1779_2|631407

>mRNA_6231-protein ID=mRNA_6231-protein|Name=jgi.p|Nanoce1779_2|631407|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MTPSASSSRSYSFSSDMEEDEEAASSSMHGPTSTGRPSLYHSSSSSSSNG
GGGLKHASWETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAA
AAGKGKLYDPAGFEFFCDACHYTLVEGEVRYECQVCPNEFCLCRSCFASP
SSSSSSSSAISHPHPCVANTRTYHISFLVKDKRDGGREEEDGDNNGHDEE
QKRAKDAQEEKQEEEEEEEEDIGPLLGSGGGPRFGGLTYAGSL*

mRNA from alignment at scaffold_15:71938..73956+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6231 ID=mRNA_6231|Name=jgi.p|Nanoce1779_2|631407|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp|location=Sequence derived from alignment at scaffold_15:71938..73956+ (Nannochloropsis oceanica)
AGCTACTTAGCAAAGCAGGCGCGGTCAAGGCTTCGACTTCCTCCCGCCAC
CATACAGATGCACTAGTTGCGTTCCTCGTCAATTGATGGGAAACGTCATT
AGCATCAACCGACGACGTGTCCTTCCTTTCATCCTCCTTCCTTTCTCACA
GGACAGCCCACGCCCAGCAAACACTCAGGGAGCCTCGATAGCAACAGAAA
CAGTAGGAGTAGTTGCAGTGGAAGGAGGCGATGGAGGTACGTGCATTGCT
GGGTATTTTCTACCACCCCCCACCCCCCCCTCCTCTCCTCTGACCTCCTA
CCCTACCCCACACTCTGCTTGTGCTGTTCTGCCACCATATGCAGGGCCTG
TTGACCTACCTTGACGAGGAGGAGGAGGAAGTCGGGGTAGAGGAGGGCAA
AAAGGGTCATCTTTGGAGTTCCAGAAAGGAAGAGGGAGTCCGCCTGGAAG
CGAACGAGGAGACGGAGCGGTCGGGACTGCACTCTCTTGCCTCCTTTCCT
ACTCTTGCCGCTTTCTCTCCTACCCTCCCTCAACTGTCTCTCCCTCCGGC
TCCACCCCCTTTTCCGGTTGCCTATACAAGCAAGGATACCACTGTCAGGC
CTCGTCGGGTGGGAAAAAAGTCAAGAAAGCGGCCACGGGATGGGAATGGA
GGAGGGGGAGGAGGGAGGGGTGTGAGATGGGCTGATGCAGCATTATTGGA
GGAAATTTTTCCATTCTTCACGGACCAACCAGTGGGTAGGTAAAGGAAGG
GAAGGCGGCAGGAGGAGAGGAAGGAAAGATGAGGGAAATGCCGTGCAGCC
AGGCGAAGCTGCGCATTGCTCCAGCGAGTACTTCTCATCCCTCATTGGAC
ACATCACCTCTTCCATTCTCTTCCCTCATGACCCCCCCCTTCCCTTTTAG
ACCCCACCGCTCCTCCTATCGGAATGACACCCTCTGCATCCTCTTCCCGA
TCCTACTCCTTCTCAAGCGACATGGAGGAAGACGAGGAGGCGGCTTCATC
CTCTATGCATGGCCCAACATCCACAGGTCGCCCTTCCCTCTACCATTCCT
CTTCCTCCTCATCGAGCAACGGAGGAGGCGGCTTGAAGCACGCATCCTGG
GAGACGGTAGTTGTGACCCGGAAGAAGAAAAACAAACCTTTGGTCTCCCT
ACCCCTCATGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCTCTTCCTCGG
AGGCAGAGACACCCGCAGCAGCTGCAGCAGGAAAGGGCAAGCTGTATGAT
CCTGCTGGGTTTGAATTTTTCTGTGACGCGTGTCACTATACGTTGGTGGA
AGGGGAAGTAAGGTACGTGTGGATGCGGTGGGGCCCAAAAAAGGGAGAGG
GGGATTGGACATAGTTGGGGCTTCGATCTTGTCTCTGTGGCTTTATTACT
CCGTTGCCTTTCTGCCCTTCTTGCCTATCACTTCTATTATGCATTGTATA
TTATGCTCTTTATTTGTGCTAACTATCTTTACCACCCCTTTTCCACTTGT
CGCTTCCGCCCTTCCTCCCGTCTCTTTCTCTCTCTCCCCCTCCCTCCTCC
TCTTCTTTTATCCCCTTCTTGCTCCCCAGGTACGAATGCCAAGTATGTCC
AAACGAGTTCTGCCTGTGCCGCTCATGCTTTGCTTCTCCGTCTTCCTCCT
CTTCTTCGTCTTCAGCTATTTCTCACCCTCACCCTTGTGTGGCAAACACG
CGGACGTACCACATTTCTTTCCTCGTCAAGGACAAGAGGGACGGTGGAAG
GGAGGAGGAAGATGGGGACAATAACGGGCACGATGAAGAGCAGAAAAGAG
CTAAGGATGCACAGGAAGAGAAACAAGAGGAGGAAGAAGAAGAGGAGGAG
GATATAGGTCCTCTGTTGGGGTCAGGGGGAGGGCCACGATTTGGTGGACT
TACATATGCAGGCTCGTTGTGAGGGAGGAGAGATGGAGATTCTAACTGTA
GCTTCTTCGCACGTTATGCATTGCTGCCTTTTGATTGTCATATCTTTGCT
TCTTCTCGTTGTTGTTGCC

Coding sequence (CDS) from alignment at scaffold_15:71938..73956+

>mRNA_6231 ID=mRNA_6231|Name=jgi.p|Nanoce1779_2|631407|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_15:71938..73956+ (Nannochloropsis oceanica)
ATGACACCCTCTGCATCCTCTTCCCGATCCTACTCCTTCTCAAGCGACAT
GGAGGAAGACGAGGAGGCGGCTTCATCCTCTATGCATGGCCCAACATCCA
CAGGTCGCCCTTCCCTCTACCATTCCTCTTCCTCCTCATCGAGCAACGGA
GGAGGCGGCTTGAAGCACGCATCCTGGGAGACGGTAGTTGTGACCCGGAA
GAAGAAAAACAAACCTTTGGTCTCCCTACCCCTCATGGAGGGAAAGTGGG
CGAATTCTCCTCCTTCCTCTTCCTCGGAGGCAGAGACACCCGCAGCAGCT
GCAGCAGGAAAGGGCAAGCTGTATGATCCTGCTGGGTTTGAATTTTTCTG
TGACGCGTGTCACTATACGTTGGTGGAAGGGGAAGTAAGGTACGAATGCC
AAGTATGTCCAAACGAGTTCTGCCTGTGCCGCTCATGCTTTGCTTCTCCG
TCTTCCTCCTCTTCTTCGTCTTCAGCTATTTCTCACCCTCACCCTTGTGT
GGCAAACACGCGGACGTACCACATTTCTTTCCTCGTCAAGGACAAGAGGG
ACGGTGGAAGGGAGGAGGAAGATGGGGACAATAACGGGCACGATGAAGAG
CAGAAAAGAGCTAAGGATGCACAGGAAGAGAAACAAGAGGAGGAAGAAGA
AGAGGAGGAGGATATAGGTCCTCTGTTGGGGTCAGGGGGAGGGCCACGAT
TTGGTGGACTTACATATGCAGGCTCGTTGTGAATGACACCCTCTGCATCC
TCTTCCCGATCCTACTCCTTCTCAAGCGACATGGAGGAAGACGAGGAGGC
GGCTTCATCCTCTATGCATGGCCCAACATCCACAGGTCGCCCTTCCCTCT
ACCATTCCTCTTCCTCCTCATCGAGCAACGGAGGAGGCGGCTTGAAGCAC
GCATCCTGGGAGACGGTAGTTGTGACCCGGAAGAAGAAAAACAAACCTTT
GGTCTCCCTACCCCTCATGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCT
CTTCCTCGGAGGCAGAGACACCCGCAGCAGCTGCAGCAGGAAAGGGCAAG
CTGTATGATCCTGCTGGGTTTGAATTTTTCTGTGACGCGTGTCACTATAC
GTTGGTGGAAGGGGAAGTAAGGTACGAATGCCAAGTATGTCCAAACGAGT
TCTGCCTGTGCCGCTCATGCTTTGCTTCTCCGTCTTCCTCCTCTTCTTCG
TCTTCAGCTATTTCTCACCCTCACCCTTGTGTGGCAAACACGCGGACGTA
CCACATTTCTTTCCTCGTCAAGGACAAGAGGGACGGTGGAAGGGAGGAGG
AAGATGGGGACAATAACGGGCACGATGAAGAGCAGAAAAGAGCTAAGGAT
GCACAGGAAGAGAAACAAGAGGAGGAAGAAGAAGAGGAGGAGGATATAGG
TCCTCTGTTGGGGTCAGGGGGAGGGCCACGATTTGGTGGACTTACATATG
CAGGCTCGTTGTGA

Synonyms

Publications