jgi.p|Nanoce1779_2|596741, mRNA_6906 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596741
Unique Name	mRNA_6906
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2696
Alignment location	scaffold_17:400285..402980 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596827
Track	FilteredModels2
ProteinId	596741

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:400285..402980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596741	gene_6906	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596741	mRNA_6906-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6906	CDS_6906	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:400285..402980+
coding sequence from alignment at scaffold_17:400285..402980+

mRNA sequence

>mRNA_6906 ID=mRNA_6906|Name=jgi.p|Nanoce1779_2|596741|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp
GCTGTCAAATATTTTCGTATAGTGGTGGTTGTGTTGTGTCAGCAGGCTTC
TTCTAGACCACTCAGGCATGCATACGAATAGCATGGGTCAGCGAATCGTC
ACAGGCTGTGGGGTGGGCGAATCAGTAAACAATACTAGTGGTCAGAGGCT
CCAACCACGTCTGAACGACGCGCCTTTCCCCTCCCGCCTCGTGAGCAGAT
GTCCGCGCGCACGCCCCTTCGTGTGCCTTCACCCTCTCCATGTTGAGAAG
TGAACTTTCTGTGTCATGTCCCACTTCTTGTACTTTTATGTGCTTGAATG
ATTGTCGTCAACGATGTGATGCCACCATACGGCACTGTGCCACACACCCA
CAGTGTGCACGCTTGCTGGGGGTAGCTCGGCGCCCTGTGCGTACCCCAGG
CGCGACGTCGCTCTTTCGGCAGGATGTGTCACAACGAGTAGCCACGCGGG
GTGCAGCTCACTCCCTCACCCCATTCCACCACGCATACCCTAGGCTCGTC
AGCGCCTGTCGCCAGTGCGCTGGCTGTCCCACTGCCGCGCGCGCATTGTT
AGGACCAGGCGGTGGTTTTCATTTGGCGCCTCCCCACATATGAGCGTGTC
ACTCACTTTCAGCTTCTTTCTTTCCCCACACCACGCCAACAGGAACAAAC
CAAGTGACCAGACACACTCCAGGAGTCTTGGCCTTTTGGAGTAGCAATAC
ACACAAGTGCCAGACAAGCATAAAGGCCACTCGTACCTTAAGCCAGACGA
CCCTGCGACCGCAGCGTCATATAAATCAACAAGAACAAGGACAACTTGTC
TTCTGCAGTTTTCCCTCGTCCTTTTTCGAGCACACAACGCCAGACGAGAC
ACAGCTCAACGATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCC
GCCCTCCTAGTGGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTT
GGGCATTCGTAACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCA
CGGCCCCACCGTCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAA
GTTGACCCTCCCCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGAT
CCCTGAAGGTTGTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCT
GCGACTTCATCTTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAA
GAGGCTTGGACACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCA
ACAAGGTGGAGGGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCC
TGTACCGATAGATAAGATGGATGTGGAATGGAGGATGACCAGGGTGACAT
GCCCTGGCCGGGGGGAGGGTATATGGGGAGGGTGGCGGTGGTGGAATTTT
TTGTCTCCGGTGGAGTAGGAGATTCCGGTTGGTTGGCCGCATGTCATTTT
TGTAGTTAAAAGTTTTGTACAGATGCGTCGTTTGTGACGCCCCAGATTGA
AGGGAGTCGAGTTTGTACCAGCAGTAGCAGCATCTGCGACAGCAGCTGTA
GGAGGAGGCCGGGCGGTCACCTCACCTCTCATGCTTGATCTTGAATCCTT
TTCTGCAGATGCTTATGGCTGGTTGTCGTCTAAAATGGAAAAATGCGTGA
GGCCCCTCATAAGAGTACCAACAGAGCAAGAGAGAGATAAGGAAGTAAGG
GAGAGGGAGATCAGTGACGAAAGGGAATAACACAAAGTCCTTGGATTTTA
TCATGCCTTTTGGAAATGAACTGAAAAGATGACTGGCAGCAGCAGCAGCA
GTAACAGCAAGCTGAATGGAGAGGAGGATGACCGGGGGCGCGCGAAAGAG
AGAGAGAGAAAGAGGGAGAGAGGGAGGGACATAACCCTGTACTTTTTTAA
CTCGATAGTTTTTTACCATTTTTAACTGCCTTAGTGTATGTAGGTTGCTT
GCCACCTCAGATGTATATAGTAATTTGGAAGGAGGCGAAGGAAGCACAGA
TCAATCTGTTTGCCCCTCCGTCTCCGTATGTGTCGTTGGCGCTGTACATT
CAATGGTTCTCCTTTTTTTATCACGGATAATCATGTCCTGTCTGTTTAAT
GTGGTGGACTGATGAAAAGAGTGGATCGCGAAAATAGCCTATGGAACCCA
CACCTGATACACGTACCCTCCTGTTGTGACACCGAAGAGAGCGGTAGGGG
ATGGGGGAGGCATGTCATGGTCGTCGATGTGGACGGATTTGGTCAGACAT
CAATCGAAAGGGACGTCTGAGAAACGAGAGGCGAGAACAGGCCAGATGAG
AGCAAGAGCCGGTGCGTTGGCCGGCGCGAAGAGGTACTTGCGTCAAAATG
AAGCCGTTCTTTCTTTTCTTTCTCCCCTTCTCCAGACCTACCGTCACCAC
TTATTCGAGGAGAGAGAGAGAGAGAGAGACGGATAGTGGGTATGAAAACC
GGAGGCAACAGAAGCAGCAGCAACAGCCTCAGCGATAATCGCTTTTACGG
GTGGACCTTTCAGTCTGCGAGAGAAGGAGGATTCTTTTTTGTTTTTAGGT
GGCCTGGCCTGTTTAAGCAGTAATTTGATTTCAATTTTGTACATAAAATT
CAAGTCCTTGCCGCACAGCACATGTTAGAAAAAGATAAGAGAAGAAGAGT
AGAGGGACCCCTCCCCTAAAGAAAGATACACGATCAGGAAGCAAGA

protein sequence of jgi.p|Nanoce1779_2|596741

>mRNA_6906-protein ID=mRNA_6906-protein|Name=jgi.p|Nanoce1779_2|596741|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAIQSTRYLAVTAALLVGLLIGLVDAFLPLGIRNSLHRASRAQSPTTAPP
SSTSTTFLSAAAQVDPPLHLKARPDWLPKIPEGCDSDYECEGTESCCDFI
FFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGGYAGNGGFSGSGGLYR*

mRNA from alignment at scaffold_17:400285..402980+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6906 ID=mRNA_6906|Name=jgi.p|Nanoce1779_2|596741|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp|location=Sequence derived from alignment at scaffold_17:400285..402980+ (Nannochloropsis oceanica)
GCTGTCAAATATTTTCGTATAGTGGTGGTTGTGTTGTGTCAGCAGGCTTC
TTCTAGACCACTCAGGCATGCATACGAATAGCATGGGTCAGCGAATCGTC
ACAGGCTGTGGGGTGGGCGAATCAGTAAACAATACTAGTGGTCAGAGGCT
CCAACCACGTCTGAACGACGCGCCTTTCCCCTCCCGCCTCGTGAGCAGAT
GTCCGCGCGCACGCCCCTTCGTGTGCCTTCACCCTCTCCATGTTGAGAAG
TGAACTTTCTGTGTCATGTCCCACTTCTTGTACTTTTATGTGCTTGAATG
ATTGTCGTCAACGATGTGATGCCACCATACGGCACTGTGCCACACACCCA
CAGTGTGCACGCTTGCTGGGGGTAGCTCGGCGCCCTGTGCGTACCCCAGG
CGCGACGTCGCTCTTTCGGCAGGATGTGTCACAACGAGTAGCCACGCGGG
GTGCAGCTCACTCCCTCACCCCATTCCACCACGCATACCCTAGGCTCGTC
AGCGCCTGTCGCCAGTGCGCTGGCTGTCCCACTGCCGCGCGCGCATTGTT
AGGACCAGGCGGTGGTTTTCATTTGGCGCCTCCCCACATATGAGCGTGTC
ACTCACTTTCAGCTTCTTTCTTTCCCCACACCACGCCAACAGGAACAAAC
CAAGTGACCAGACACACTCCAGGAGTCTTGGCCTTTTGGAGTAGCAATAC
ACACAAGTGCCAGACAAGCATAAAGGCCACTCGTACCTTAAGCCAGACGA
CCCTGCGACCGCAGCGTCATATAAATCAACAAGAACAAGGACAACTTGTC
TTCTGCAGTTTTCCCTCGTCCTTTTTCGAGCACACAACGCCAGACGAGAC
ACAGCTCAACGATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCC
GCCCTCCTAGTGGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTT
GGGCATTCGTAACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCA
CGGCCCCACCGTCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAA
GTTGACCCTCCCCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGAT
CCCTGAAGGTTGTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCT
GCGACTTCATCTTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAA
GAGGCTTGGACACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCA
ACAAGGTGGAGGGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCC
TGTACCGATAGATAAGATGGATGTGGAATGGAGGATGACCAGGGTGACAT
GCCCTGGCCGGGGGGAGGGTATATGGGGAGGGTGGCGGTGGTGGAATTTT
TTGTCTCCGGTGGAGTAGGAGATTCCGGTTGGTTGGCCGCATGTCATTTT
TGTAGTTAAAAGTTTTGTACAGATGCGTCGTTTGTGACGCCCCAGATTGA
AGGGAGTCGAGTTTGTACCAGCAGTAGCAGCATCTGCGACAGCAGCTGTA
GGAGGAGGCCGGGCGGTCACCTCACCTCTCATGCTTGATCTTGAATCCTT
TTCTGCAGATGCTTATGGCTGGTTGTCGTCTAAAATGGAAAAATGCGTGA
GGCCCCTCATAAGAGTACCAACAGAGCAAGAGAGAGATAAGGAAGTAAGG
GAGAGGGAGATCAGTGACGAAAGGGAATAACACAAAGTCCTTGGATTTTA
TCATGCCTTTTGGAAATGAACTGAAAAGATGACTGGCAGCAGCAGCAGCA
GTAACAGCAAGCTGAATGGAGAGGAGGATGACCGGGGGCGCGCGAAAGAG
AGAGAGAGAAAGAGGGAGAGAGGGAGGGACATAACCCTGTACTTTTTTAA
CTCGATAGTTTTTTACCATTTTTAACTGCCTTAGTGTATGTAGGTTGCTT
GCCACCTCAGATGTATATAGTAATTTGGAAGGAGGCGAAGGAAGCACAGA
TCAATCTGTTTGCCCCTCCGTCTCCGTATGTGTCGTTGGCGCTGTACATT
CAATGGTTCTCCTTTTTTTATCACGGATAATCATGTCCTGTCTGTTTAAT
GTGGTGGACTGATGAAAAGAGTGGATCGCGAAAATAGCCTATGGAACCCA
CACCTGATACACGTACCCTCCTGTTGTGACACCGAAGAGAGCGGTAGGGG
ATGGGGGAGGCATGTCATGGTCGTCGATGTGGACGGATTTGGTCAGACAT
CAATCGAAAGGGACGTCTGAGAAACGAGAGGCGAGAACAGGCCAGATGAG
AGCAAGAGCCGGTGCGTTGGCCGGCGCGAAGAGGTACTTGCGTCAAAATG
AAGCCGTTCTTTCTTTTCTTTCTCCCCTTCTCCAGACCTACCGTCACCAC
TTATTCGAGGAGAGAGAGAGAGAGAGAGACGGATAGTGGGTATGAAAACC
GGAGGCAACAGAAGCAGCAGCAACAGCCTCAGCGATAATCGCTTTTACGG
GTGGACCTTTCAGTCTGCGAGAGAAGGAGGATTCTTTTTTGTTTTTAGGT
GGCCTGGCCTGTTTAAGCAGTAATTTGATTTCAATTTTGTACATAAAATT
CAAGTCCTTGCCGCACAGCACATGTTAGAAAAAGATAAGAGAAGAAGAGT
AGAGGGACCCCTCCCCTAAAGAAAGATACACGATCAGGAAGCAAGA

Coding sequence (CDS) from alignment at scaffold_17:400285..402980+

>mRNA_6906 ID=mRNA_6906|Name=jgi.p|Nanoce1779_2|596741|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_17:400285..402980+ (Nannochloropsis oceanica)
ATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCCGCCCTCCTAGT
GGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTTGGGCATTCGTA
ACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCACGGCCCCACCG
TCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAAGTTGACCCTCC
CCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGATCCCTGAAGGTT
GTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCTGCGACTTCATC
TTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAAGAGGCTTGGAC
ACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCAACAAGGTGGAG
GGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCCTGTACCGATAG

Synonyms

Publications