jgi.p|Nanoce1779_2|672246, mRNA_6798 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672246
Unique NamemRNA_6798
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_17:121314..122230 -

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Properties
Property NameValue
TranscriptId672332
TrackFilteredModels2
ProteinId672246
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:121314..122230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672246gene_6798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672246mRNA_6798-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6798CDS_6798Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Nanoce1779_2|672246|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
GGAGGGTGATGTCGGGCCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGA
AGATTGCGAGACAAAAAGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGC
GATTGCGGTATTGCATGGACATGGCCAGCAAGGACGTGTTTAGGATTCTG
CGAAACAAGGCCAGCTCCTGAGGCTCATTCTATATCATCCTGTGGCTGGT
TCTCCTCTGCTTTCCATGTCGCGTGCATGCCTGACTCTGACTAGATCAAT
GGCCAGACCATACCACACAGACATGACATCTCTTAGGTCTAGGAGAAAAG
CAGCGTAAGACTGAGGCCTTCACAAGCTCGTCCATCTGGACTCTTTCATC
GACCGTGCGCCCACCATGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCC
TTACCCGACAACACCTATGTATCATATATCTCACAGCCAAAACCATGAAC
GTTGTAGCTTCCTTCTTGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGC
CGCAGACATCACTGCCCTTATTAGTTCTACCGGTGGGGAGGCGGATGAGG
CCAAGGTGGAGCTTTTGATGAAGGAGATAGAGGGCAAGGACGTAGAGGAG
CTGCTGAAGGAGGGCAAGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGG
TGGGGGTGGGGGTGGGGTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCAC
CGCCTGCTGCGGTAAAGGAGGAGAAGGAGGAGGAAGCGGACCTGGGCGGG
GCCATGGACATGTTTGGGGTAAGTGAATGA
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protein sequence of jgi.p|Nanoce1779_2|672246

>mRNA_6798-protein ID=mRNA_6798-protein|Name=jgi.p|Nanoce1779_2|672246|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGVSE*
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mRNA from alignment at scaffold_17:121314..122230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Nanoce1779_2|672246|organism=Nannochloropsis oceanica|type=mRNA|length=917bp|location=Sequence derived from alignment at scaffold_17:121314..122230- (Nannochloropsis oceanica)
GGAGGGTGATGTCGGGCCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGA
AGATTGCGAGACAAAAAGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGC
GATTGCGGTATTGCATGGACATGGCCAGCAAGGACGTGTTTAGGATTCTG
CGAAACAAGGCCAGCTCCTGAGGCTCATTCTATATCATCCTGTGGCTGGT
TCTCCTCTGCTTTCCATGTCGCGTGCATGCCTGACTCTGACTAGATCAAT
GGCCAGACCATACCACACAGACATGACATCTCTTAGGTCTAGGAGAAAAG
CAGCGTAAGACTGAGGCCTTCACAAGCTCGTCCATCTGGACTCTTTCATC
GACCGTGCGCCCACCATGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCC
TTACCCGACAACACCTATGTATCATATATCTCACAGCCAAAACCATGAAC
GTTGTAGCTTCCTTCTTGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGC
CGCAGACATCACTGCCCTTATTAGTTCTACCGGTGGGGAGGCGGATGAGG
CCAAGGTGGAGCTTTTGATGAAGGAGATAGAGGGCAAGGACGTAGAGGAG
CTGCTGAAGGAGGGCAAGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGG
TGGGGGTGGGGGTGGGGTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCAC
CGCCTGCTGCGGTAAAGGTGGGTGCTTGGTTGGGTCAGGGAAGAGGGAAT
GCAGAAGCGACGAGCACGTGTCGCCCATCTTGCGTTCTTGCTACCGTGTC
ATCATGCTCGCTTTTTAAACCCTCTACACCATCTTACTCTATATCTATCC
ACAGGAGGAGAAGGAGGAGGAAGCGGACCTGGGCGGGGCCATGGACATGT
TTGGGGTAAGTGAATGA
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Coding sequence (CDS) from alignment at scaffold_17:121314..122230-

>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Nanoce1779_2|672246|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_17:121314..122230- (Nannochloropsis oceanica)
GAGGAGAAGGAGGAGGAAGCGGACCTGGGCGGGGCCATGGACATGTTTGG
GGTAAGTGAATGAATGAACGTTGTAGCTTCCTTCTTGCTTCTCAAGCTCG
CGGGGAAGGATCCCAAGGCCGCAGACATCACTGCCCTTATTAGTTCTACC
GGTGGGGAGGCGGATGAGGCCAAGGTGGAGCTTTTGATGAAGGAGATAGA
GGGCAAGGACGTAGAGGAGCTGCTGAAGGAGGGCAAGGACAAGCTTAAGA
GCGTCTCTATGGGCGGGGGTGGGGGTGGGGGTGGGGTTGCGGCCCCGGCG
GCTGCGGCAGCTGGTGCACCGCCTGCTGCGGTAAAGGAGGAGAAGGAGGA
GGAAGCGGACCTGGGCGGGGCCATGGACATGTTTGGGGTAAGTGAATGAA
TGAACGTTGTAGCTTCCTTCTTGCTTCTCAAGCTCGCGGGGAAGGATCCC
AAGGCCGCAGACATCACTGCCCTTATTAGTTCTACCGGTGGGGAGGCGGA
TGAGGCCAAGGTGGAGCTTTTGATGAAGGAGATAGAGGGCAAGGACGTAG
AGGAGCTGCTGAAGGAGGGCAAGGACAAGCTTAAGAGCGTCTCTATGGGC
GGGGGTGGGGGTGGGGGTGGGGTTGCGGCCCCGGCGGCTGCGGCAGCTGG
TGCACCGCCTGCTGCGGTAAAG
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Synonyms
Publications