jgi.p|Nanoce1779_2|597602, mRNA_6648 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597602
Unique NamemRNA_6648
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_18:360803..361604 +

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Properties
Property NameValue
TranscriptId597688
TrackFilteredModels2
ProteinId597602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:360803..361604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597602gene_6648Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597602mRNA_6648-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6648CDS_6648Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6648 ID=mRNA_6648|Name=jgi.p|Nanoce1779_2|597602|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
ACAGGTGGACACGCATGACATCTTCTCCTTCTCCGCATATACCCCCGCGG
CAGTGGCTCGTAACTTTCTTTGTCGTCCTCAATAGCCTGTTCCTATTCCT
AAGCTTCATAGACGATGCCGTGGCTGTGACAAGCCATAACCGCCGCAAAT
CAAGAGGGGCCAAAGCCCATTCTAAGACTCACTTTAACACTAAAACGGCA
ACACATCACCACCGGAAGAAGGCCCGACGCACACGACCTACGCCCACGCA
TGGGGCACAATTTGGAGCTTTCCTCACCGCCATCAAAGTCGTCTTTTTCT
TCTCAGTACTTCCTGTTGTGGCCTACATAATTTGGGCAATTGCATCAGAC
CCCAAAACTCAGCGTATTACGAGGCATCTCTGTTTCGCCGCAAAGAAACG
AGTGTATCGTACATTAGGCTGGCCCTTGCCCCAACTACAATCCGCTGTGT
CGTTGCCTCAACAACAGTCCGCTGTAACAGTGGAACTTAAGCAGCATGAA
CTGGAAGAGGGAGGGACTTCTTTCTGGGACTCGTTGGATGCTCGCAATGA
GGACGAGACTCGCAAGAGCAAGTAGATTAGATGGCCAATAAGAGTGATGG
GAAGGGTAAAGGGATAAAGATATAAAGTACGATACAGAAACTGAGTCATT
ATAAAGGAATGCTTGAACGTGGGTCGGTGAATTCAAGTGTTTTACAAAAT
TATGGCGGTGTTTTGTTTAATGTAGAAGCATGCTCGGCAATATGCCAGCG
ATCGCGAGAGGAAAAATGGAAAGAAACATACATTAGAGTGCAGGGAGCGG
TG
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protein sequence of jgi.p|Nanoce1779_2|597602

>mRNA_6648-protein ID=mRNA_6648-protein|Name=jgi.p|Nanoce1779_2|597602|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MTSSPSPHIPPRQWLVTFFVVLNSLFLFLSFIDDAVAVTSHNRRKSRGAK
AHSKTHFNTKTATHHHRKKARRTRPTPTHGAQFGAFLTAIKVVFFFSVLP
VVAYIIWAIASDPKTQRITRHLCFAAKKRVYRTLGWPLPQLQSAVSLPQQ
QSAVTVELKQHELEEGGTSFWDSLDARNEDETRKSK*
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mRNA from alignment at scaffold_18:360803..361604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6648 ID=mRNA_6648|Name=jgi.p|Nanoce1779_2|597602|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at scaffold_18:360803..361604+ (Nannochloropsis oceanica)
ACAGGTGGACACGCATGACATCTTCTCCTTCTCCGCATATACCCCCGCGG
CAGTGGCTCGTAACTTTCTTTGTCGTCCTCAATAGCCTGTTCCTATTCCT
AAGCTTCATAGACGATGCCGTGGCTGTGACAAGCCATAACCGCCGCAAAT
CAAGAGGGGCCAAAGCCCATTCTAAGACTCACTTTAACACTAAAACGGCA
ACACATCACCACCGGAAGAAGGCCCGACGCACACGACCTACGCCCACGCA
TGGGGCACAATTTGGAGCTTTCCTCACCGCCATCAAAGTCGTCTTTTTCT
TCTCAGTACTTCCTGTTGTGGCCTACATAATTTGGGCAATTGCATCAGAC
CCCAAAACTCAGCGTATTACGAGGCATCTCTGTTTCGCCGCAAAGAAACG
AGTGTATCGTACATTAGGCTGGCCCTTGCCCCAACTACAATCCGCTGTGT
CGTTGCCTCAACAACAGTCCGCTGTAACAGTGGAACTTAAGCAGCATGAA
CTGGAAGAGGGAGGGACTTCTTTCTGGGACTCGTTGGATGCTCGCAATGA
GGACGAGACTCGCAAGAGCAAGTAGATTAGATGGCCAATAAGAGTGATGG
GAAGGGTAAAGGGATAAAGATATAAAGTACGATACAGAAACTGAGTCATT
ATAAAGGAATGCTTGAACGTGGGTCGGTGAATTCAAGTGTTTTACAAAAT
TATGGCGGTGTTTTGTTTAATGTAGAAGCATGCTCGGCAATATGCCAGCG
ATCGCGAGAGGAAAAATGGAAAGAAACATACATTAGAGTGCAGGGAGCGG
TG
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Coding sequence (CDS) from alignment at scaffold_18:360803..361604+

>mRNA_6648 ID=mRNA_6648|Name=jgi.p|Nanoce1779_2|597602|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_18:360803..361604+ (Nannochloropsis oceanica)
ATGACATCTTCTCCTTCTCCGCATATACCCCCGCGGCAGTGGCTCGTAAC
TTTCTTTGTCGTCCTCAATAGCCTGTTCCTATTCCTAAGCTTCATAGACG
ATGCCGTGGCTGTGACAAGCCATAACCGCCGCAAATCAAGAGGGGCCAAA
GCCCATTCTAAGACTCACTTTAACACTAAAACGGCAACACATCACCACCG
GAAGAAGGCCCGACGCACACGACCTACGCCCACGCATGGGGCACAATTTG
GAGCTTTCCTCACCGCCATCAAAGTCGTCTTTTTCTTCTCAGTACTTCCT
GTTGTGGCCTACATAATTTGGGCAATTGCATCAGACCCCAAAACTCAGCG
TATTACGAGGCATCTCTGTTTCGCCGCAAAGAAACGAGTGTATCGTACAT
TAGGCTGGCCCTTGCCCCAACTACAATCCGCTGTGTCGTTGCCTCAACAA
CAGTCCGCTGTAACAGTGGAACTTAAGCAGCATGAACTGGAAGAGGGAGG
GACTTCTTTCTGGGACTCGTTGGATGCTCGCAATGAGGACGAGACTCGCA
AGAGCAAGTAG
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Synonyms
Publications