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Properties
| Property Name | Value |
|---|
| TranscriptId | 574574 |
| Track | FilteredModels2 |
| ProteinId | 574488 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:640729..642160 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_875 ID=mRNA_875|Name=jgi.p|Nanoce1779_2|574488|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATGGCTCGAGTGACCAGGCAGCACCCCTGGTCCATAGGGACCACGGGGCG
GGGGTGGGGAAGAAACGCGCCACCAGGAAGCAGACTACCAAAGCTTCCCC
ATTCCAAAAATTCCACTCCAACCCTTACATCTTCGCCCTGTTTTTATATC
TGATGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGC
CGAGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGC
CCTCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACT
ACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAG
ACCTACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGG
TGGGCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGA
TGGAGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAAT
GGCAGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTT
CCTCCACGAAAGCTACGTCACCATGACTACCGGAGAAATAGCCAGGCATT
ACTCTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCAC
CACCACCCACACAACCATCCTTTCACACTGCAACACACACGGTTCACCAA
AAAAATCCGATAGGATGCTCCCGCTACACAAGATGGGACCCAGAATATGT
TCCACGCCCTCAAGAAAGGGTGTGACCGGTCGACCTCCAAATTGATCCAG
TTTCAGGACATCAAAGTGGACAAAATGCCAAAAAAACCACAGGCATACTA
CACTTGGCTCAAGGAGGAGTGTGGCCATAAGATGTCGCAGGAGGAGGCAA
AGGAACTAGCATACGGACTTGCTTACCAACTCGTCTTAGCGCGCTACTCG
GACACGTTTTCCATGTGGGTGACATGACAATGAATAAACTCAATACCACC
CAACCACCTACTCCCCACACACACGCACCTCCTCATGAATGTTCCCACCT
ACTCACTCCCAATAGGATGACCATGATTGGCAGTCCGTGGCTGGAACGAT
ACCGGGGGAGAGGTGCGCCGTTCGAAAAGGTTGTGTCTTACGCCAAAGCA
GAAGCCGATCTAGGTGCTATTGTTGAACTTTCACGTTCCTTTACGCTAGA
AAACAACATGAAGGATCGTCGGACCTCCGACACTTCGGGTGGTGGTCTTT
GGGATGCGCAGGAAGACAGGGAGTGTGACAGCTCAATGGGCGGTGGCGGG
GGGGAAACCGTCTCCCGGGGTGACCCGGGGGACGACTGTTTGAG back to topprotein sequence of jgi.p|Nanoce1779_2|574488 >mRNA_875-protein ID=mRNA_875-protein|Name=jgi.p|Nanoce1779_2|574488|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MVDGPIDLTDETFEHGRVDWFSPFDLNGRRNIALLKSCVQRLQALIKKHY
PAFVPAFAGFTADKCKTYTDQMWVKRSGEEVKGGLGGGGKNLKRVPRLEM
EIPEPTVHDGSRVTVNGSPVLVRTPYEVRVSEFLHESYVTMTTGEIARHY
SGAGAFAAEVRESTTHHHPHNHPFTLQHTRFTKKIR* back to topmRNA from alignment at scaffold_2:640729..642160- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_875 ID=mRNA_875|Name=jgi.p|Nanoce1779_2|574488|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_2:640729..642160- (Nannochloropsis oceanica)
ATGGCTCGAGTGACCAGGCAGCACCCCTGGTCCATAGGGACCACGGGGCG
GGGGTGGGGAAGAAACGCGCCACCAGGAAGCAGACTACCAAAGCTTCCCC
ATTCCAAAAATTCCACTCCAACCCTTACATCTTCGCCCTGTTTTTATATC
TGAGTAAGTGATGATGTGGCTGTGTGAGTGACATGTCTGTGCATTTGTGT
TTCCGTTCTTAACTCACACAACTACCCCACCACATCCTCAGTGGTGGATG
GTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGCCGAGTGGATTGG
TTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGCCCTCCTCAAGTC
CTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACTACCCTGCTTTTG
TGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAGACCTACACTGAC
CAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGGTGGGCTTGGTGG
GGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGATGGAGATCCCTG
AGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAATGGCAGCCCTGTC
CTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTTCCTCCACGAAAG
CTACGTCACCATGACTACCGGAGAAATAGCCAGGCATTACTCTGGAGCAG
GAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCACCACCACCCACAC
AACCATCCTTTCACACTGCAACACACACGGTTCACCAAAAAAATCCGATA
GGATGCTCCCGCTACACAAGATGGGACCCAGAATATGTTCCACGCCCTCA
AGAAAGGGTGTGACCGGTCGACCTCCAAATTGATCCAGTTTCAGGACATC
AAAGTGGACAAAATGCCAAAAAAACCACAGGCATACTACACTTGGCTCAA
GGAGGAGTGTGGCCATAAGATGTCGCAGGAGGAGGCAAAGGAACTAGCAT
ACGGACTTGCTTACCAACTCGTCTTAGCGCGCTACTCGGACACGTTTTCC
ATGTGGGTGACATGACAATGAATAAACTCAATACCACCCAACCACCTACT
CCCCACACACACGCACCTCCTCATGAATGTTCCCACCTACTCACTCCCAA
TAGGATGACCATGATTGGCAGTCCGTGGCTGGAACGATACCGGGGGAGAG
GTGCGCCGTTCGAAAAGGTTGTGTCTTACGCCAAAGCAGAAGCCGATCTA
GGTGCTATTGTTGAACTTTCACGTTCCTTTACGCTAGAAAACAACATGAA
GGATCGTCGGACCTCCGACACTTCGGGTGGTGGTCTTTGGGATGCGCAGG
AAGACAGGGAGTGTGACAGCTCAATGGGCGGTGGCGGGGGGGAAACCGTC
TCCCGGGGTGACCCGGGGGACGACTGTTTGAG back to topCoding sequence (CDS) from alignment at scaffold_2:640729..642160- >mRNA_875 ID=mRNA_875|Name=jgi.p|Nanoce1779_2|574488|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_2:640729..642160- (Nannochloropsis oceanica)
TGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCGAGCATGGCCGA
GTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGCAACATCGCCCT
CCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAAAAAACACTACC
CTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACAAATGTAAGACC
TACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGAGGTAAAAGGTGG
GCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTCGCTTGGAGATGG
AGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTGACGGTGAATGGC
AGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGTATCTGAGTTCCT
CCACGAAAGCTACGTCACCATGACTACCGGAGAAATAGCCAGGCATTACT
CTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCAACCACCCACCAC
CACCCACACAACCATCCTTTCACACTGCAACACACACGGTTCACCAAAAA
AATCCGATAGATGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCG
AGCATGGCCGAGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGC
AACATCGCCCTCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAA
AAAACACTACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACA
AATGTAAGACCTACACTGACCAAATGTGGGTGAAGAGAAGCGGAGAAGAG
GTAAAAGGTGGGCTTGGTGGGGGGGGGAAGAACCTGAAAAGAGTCCCTCG
CTTGGAGATGGAGATCCCTGAGCCCACGGTGCACGATGGGAGTCGTGTGA
CGGTGAATGGCAGCCCTGTCCTCGTCCGCACGCCCTACGAGGTGAGGGTA
TCTGAGTTCCTCCACGAAAGCTACGTCACCATGACTACCGGAGAAATAGC
CAGGCATTACTCTGGAGCAGGAGCATTTGCGGCGGAGGTACGGGAGTCAA
CCACCCACCACCACCCACACAACCATCCTTTCACACTGCAACACACACGG
TTCACCAAAAAAATCCGATAGA back to top
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