jgi.p|Nanoce1779_2|636123, mRNA_824 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636123
Unique NamemRNA_824
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1131
Alignment locationscaffold_2:515030..516431 -

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Properties
Property NameValue
TranscriptId636209
TrackFilteredModels2
ProteinId636123
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:515030..516431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636123gene_824Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636123mRNA_824-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_824CDS_824Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_824 ID=mRNA_824|Name=jgi.p|Nanoce1779_2|636123|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGTACGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTC
GATCCGCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGA
GTGAGCAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCC
TGGAATCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGAC
TTATCTTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAG
AGCAGCAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAG
TTCAACGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCG
TATTGTCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAAC
AGGTTGCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAAT
TACGATGGGTATACACTCGAATTCCCAATCGACGCCCGCGGGGTTTTCGC
GCATCTCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCT
CCTTGCCTCCCATTCTTATCGTGGCCATTCCTGCATTTCAAATGCCTACC
CGTCCGGCGACCCCGCGGGAGATGCACGTGACCCCCTCAATGCTTCTCTC
CCTTTCACCGCACGTGGACCGTTTTTCCCTCATGACGTACGACTATGGCC
GCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGGATGGATGGAAGAGACC
ATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGC
GGATTTGGTTAAGATAAAGATGTTGTTGGGGCTACCCTGGTATGGGTATG
TGGGTGGTCAGGCGATTGTGGGACACGAGTTTGAGAGAAAAGTCTTAGAG
AGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCT
TATTTTTTCTTTACGAGGGGAGGGAGGGAGGGATGGAAGGAGGCAAGACG
AGATGGTAGGGACTTTCCCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCG
TTGGTAAGTGAAATGGGTATGGCCGGGATAGCTGTGTGGGAGGTAGGACA
GGGGTTAGAGTGTTTTCCGATGCTCTGGTAG
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protein sequence of jgi.p|Nanoce1779_2|636123

>mRNA_824-protein ID=mRNA_824-protein|Name=jgi.p|Nanoce1779_2|636123|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQRAQEVLAYVTP
WNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQLELTGKHE
FNGTWLDNVRHKSGRVRIVPRVIWEVPAFVNPEQVAEVVGLLVDEAKERN
YDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPILIVAIPAFQMPT
RPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGAPNSPLGWMEET
IESFVQGRKEGGADKGADLVKIKMLLGLPWYGYVGGQAIVGHEFERKVLE
RPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTFPTPAFFWRRFA
LVSEMGMAGIAVWEVGQGLECFPMLW*
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mRNA from alignment at scaffold_2:515030..516431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_824 ID=mRNA_824|Name=jgi.p|Nanoce1779_2|636123|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_2:515030..516431- (Nannochloropsis oceanica)
ATGTACGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTC
GATCCGCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGA
GTGAGCAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCC
TGGAATCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGAC
TTATCTTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAG
AGCAGCAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAG
TTCAACGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCG
TATTGTCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAAC
AGGTTGCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAAT
TACGATGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTT
TCAGATTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGT
CACTGCCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCC
CTCAATCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAA
TTCCCAATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAA
GGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCG
TGGCCATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAG
ATGCACGTACGTCGTCCTCGTAGCCACCTTCCTTCCCCCCTCCCTCCCTT
CCTGAATTCACGACAAAGACTTAATTTCTTCCTTTTTAAAAATAACAGGT
GACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCC
TCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCC
CTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGA
GGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGG
GGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAG
TTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTG
GGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGA
GGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCG
TTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGAT
AGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGT
AG
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Coding sequence (CDS) from alignment at scaffold_2:515030..516431-

>mRNA_824 ID=mRNA_824|Name=jgi.p|Nanoce1779_2|636123|organism=Nannochloropsis oceanica|type=CDS|length=3393bp|location=Sequence derived from alignment at scaffold_2:515030..516431- (Nannochloropsis oceanica)
GTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTC
CCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCC
CCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAG
GAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTT
GGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACG
AGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAG
TGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGG
GAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGG
CGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGG
ATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTG
GTAGGTATACACTCGAATTCCCAATCGACGCCCGCGGGGTTTTCGCGCAT
CTCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTT
GCCTCCCATTCTTATCGTGGCCATTCCTGCATTTCAAATGCCTACCCGTC
CGGCGACCCCGCGGGAGATGCACATGTACGAGACGCAGAACCTAACGCTA
GACCACCTACGACAGTGTGCCTCGATCCGCACGGCACCTGAAGACACTCA
CTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAGCGGGCACAAG
AGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTTTGTAGTAGCG
GAGACATATGCTCACAAACTGACTTATCTTGCCCCCGTCTGGTATCAGCT
AAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAGCGACAGCAGT
TGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCTCGACAATGTA
CGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGATTTGGGAGGT
ACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTGGGGCTGTTGG
TGGACGAGGCGAAGGAGAGGAATTACGATGGGTGACCCCCTCAATGCTTC
TCTCCCTTTCACCGCACGTGGACCGTTTTTCCCTCATGACGTACGACTAT
GGCCGCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGGATGGATGGAAGA
GACCATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGGGGGCAGATAAGG
GGGCGGATTTGGTTAAGATAAAGATGTTGTTGGGGCTACCCTGGTATGGG
TATGTGGGTGGTCAGGCGATTGTGGGACACGAGTTTGAGAGAAAAGTCTT
AGAGAGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGGAGGAGAGTCAGG
AGCTTATTTTTTCTTTACGAGGGGAGGGAGGGAGGGATGGAAGGAGGCAA
GACGAGATGGTAGGGACTTTCCCGACGCCGGCGTTCTTCTGGAGGAGGTT
TGCGTTGGTAAGTGAAATGGGTATGGCCGGGATAGCTGTGTGGGAGGTAG
GACAGGGGTTAGAGTGTTTTCCGATGCTCTGGTAGGTATACACTCGAATT
CCCAATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGG
CTTCCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTG
GCCATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGAT
GCACATGTACGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTG
CCTCGATCCGCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCC
TGGAGTGAGCAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCAC
ACCCTGGAATCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAAC
TGACTTATCTTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAG
CAAGAGCAGCAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACA
CGAGTTCAACGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCG
TGCGTATTGTCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCA
GAACAGGTTGCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAG
GAATTACGATGGGTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGT
GGACCGTTTTTCCCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCG
CGCCAAACAGCCCCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTT
CAAGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGAT
AAAGATGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGA
TTGTGGGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTA
CGGCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACG
AGGGGAGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTT
TCCCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATG
GGTATGGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTT
TCCGATGCTCTGGTAGGTATACACTCGAATTCCCAATCGACGCCCGCGGG
GTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGGCTAT
TCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCCATTCCTGCATTTCAAA
TGCCTACCCGTCCGGCGACCCCGCGGGAGATGCACATGTACGAGACGCAG
AACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCCGCACGGCACC
TGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATC
AGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGT
TTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATCTTGCCCCCGT
CTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATC
AGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGG
CTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGT
GATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCG
TGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGATGG
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Synonyms
Publications