jgi.p|Nanoce1779_2|654544, mRNA_7829 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|654544
Unique NamemRNA_7829
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1503
Alignment locationscaffold_21:434182..435684 -

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Properties
Property NameValue
TranscriptId654630
TrackFilteredModels2
ProteinId654544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:434182..435684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654544gene_7829Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654544mRNA_7829-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7829CDS_7829Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7829 ID=mRNA_7829|Name=jgi.p|Nanoce1779_2|654544|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
ATGAACCCAGCATCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCACGGTGTCACGGCGG
GCCTCGGTCGTTGTCGCGGCGGACGTCGCGGACGTCTCGGACGTCGAACA
TGGCCAGCAACAGCAACCCCAGCAGCATCACCAAAACAAACAGCACCGCC
CGCGACACTCCTACCACCACCACCAGTACTACCAGCACGAGCAGAAGAAG
TACGACGTTTGTCACAATAAGGTGCGTCCTTTCTCAACACGCCAGCAGCA
GCAACGACTGGCAGTCGCACTCCTCCTAATCCTCCTTCTCCTCGGCATGG
TCAAATGGTTCCGGCTCTTTCCGCCTATCTCCAGCATTGCCTCGTCCTCT
ATCGCCTCCTCCATCTCATTGCCCTACACCTTGGCCAGCAACGGCCCCCA
TGCCACGGGTCTCGCCATCGGGGTGATAAGTGGTCCTCAACTCGCCCAAA
AACGTCGTGTTCGCCTCCTGCAAGACACCTGGTTCACCTCGCTTGACTCT
CAAAGAGACGGTGTCCTCGTATTTAGCGATGGGGCGGACGCAACAGTTCC
AGCAGTAGGCATTCCAGGGACGGGTTCCACATGGCAGGGGGCGCAGGATC
GGTGGTTGCCAGCTGTGACATATCTATCAATGGCTTTTCCCAAGGCAGAG
TGGTATGTCTTGGTGGACGACGACACGTTTTTGATTCCCAGCAACTTAAA
GGCAATGCTTTCAGAACAGAAAATAAAAAATAAAAAGAAGGGGGAAGAGG
AAATATACATAGGACGGACGATGTTTGTCACGCCGCAGGAGGGGAGATTG
CAAGGTCAGATGCTCCCCTTTGCCCATGGGGGATCGGGGGTGGTGTTGTC
CGCGGCGTTGGTCAGGGAGATGGTACCTTTAATTATGGAGGTATTGGTGG
GAGAGAGAGAGAGGTGTCAGGGGACGGGGTACGGCGATGGGGATTTGGGA
TTGTGTATCAAGGTGTTGCGAGGCGTGAGTGTACGGCATGACGCGTGCTT
GCATGCATTGGGTCCGAAGGGCTCGTATGAAGGCCAGGGAGGAGGGGAGG
AGGTGGGATGGTTTGGGGATGGGGGAAGGCCGTGCTCGTTTCATTATGCC
TTCGGGGAGGACAGGGAGAGGGGGAATGGAGAGAAGGAGCGAGGGAGGGA
GGAGGGTAGGGTAGAAGGGGGGAAAGATGGGGCGGGTGATGAGCAGATTC
GGGCGTGGCATCAGAGGTACAATGTCGAGGAGTGAGGGAGGTGATTGTAA
ATATAGAAATGCATGTTGGTGGCAAGATGAGGTGAAATATGACAGCGCGT
AAGTAAAATAAAGCGATCAATTAAAGAGGTGAGACTTGATTCAAAAATGA
GTATATTTGTGGCAATGAGAGTTTTCTTGTTCTTTTTATTTTTCTTCTTT
TCT
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protein sequence of jgi.p|Nanoce1779_2|654544

>mRNA_7829-protein ID=mRNA_7829-protein|Name=jgi.p|Nanoce1779_2|654544|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MNPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTSSSSSSTVSRR
ASVVVAADVADVSDVEHGQQQQPQQHHQNKQHRPRHSYHHHQYYQHEQKK
YDVCHNKVRPFSTRQQQQRLAVALLLILLLLGMVKWFRLFPPISSIASSS
IASSISLPYTLASNGPHATGLAIGVISGPQLAQKRRVRLLQDTWFTSLDS
QRDGVLVFSDGADATVPAVGIPGTGSTWQGAQDRWLPAVTYLSMAFPKAE
WYVLVDDDTFLIPSNLKAMLSEQKIKNKKKGEEEIYIGRTMFVTPQEGRL
QGQMLPFAHGGSGVVLSAALVREMVPLIMEVLVGERERCQGTGYGDGDLG
LCIKVLRGVSVRHDACLHALGPKGSYEGQGGGEEVGWFGDGGRPCSFHYA
FGEDRERGNGEKERGREEGRVEGGKDGAGDEQIRAWHQRYNVEE*
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mRNA from alignment at scaffold_21:434182..435684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7829 ID=mRNA_7829|Name=jgi.p|Nanoce1779_2|654544|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp|location=Sequence derived from alignment at scaffold_21:434182..435684- (Nannochloropsis oceanica)
ATGAACCCAGCATCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCACGGTGTCACGGCGG
GCCTCGGTCGTTGTCGCGGCGGACGTCGCGGACGTCTCGGACGTCGAACA
TGGCCAGCAACAGCAACCCCAGCAGCATCACCAAAACAAACAGCACCGCC
CGCGACACTCCTACCACCACCACCAGTACTACCAGCACGAGCAGAAGAAG
TACGACGTTTGTCACAATAAGGTGCGTCCTTTCTCAACACGCCAGCAGCA
GCAACGACTGGCAGTCGCACTCCTCCTAATCCTCCTTCTCCTCGGCATGG
TCAAATGGTTCCGGCTCTTTCCGCCTATCTCCAGCATTGCCTCGTCCTCT
ATCGCCTCCTCCATCTCATTGCCCTACACCTTGGCCAGCAACGGCCCCCA
TGCCACGGGTCTCGCCATCGGGGTGATAAGTGGTCCTCAACTCGCCCAAA
AACGTCGTGTTCGCCTCCTGCAAGACACCTGGTTCACCTCGCTTGACTCT
CAAAGAGACGGTGTCCTCGTATTTAGCGATGGGGCGGACGCAACAGTTCC
AGCAGTAGGCATTCCAGGGACGGGTTCCACATGGCAGGGGGCGCAGGATC
GGTGGTTGCCAGCTGTGACATATCTATCAATGGCTTTTCCCAAGGCAGAG
TGGTATGTCTTGGTGGACGACGACACGTTTTTGATTCCCAGCAACTTAAA
GGCAATGCTTTCAGAACAGAAAATAAAAAATAAAAAGAAGGGGGAAGAGG
AAATATACATAGGACGGACGATGTTTGTCACGCCGCAGGAGGGGAGATTG
CAAGGTCAGATGCTCCCCTTTGCCCATGGGGGATCGGGGGTGGTGTTGTC
CGCGGCGTTGGTCAGGGAGATGGTACCTTTAATTATGGAGGTATTGGTGG
GAGAGAGAGAGAGGTGTCAGGGGACGGGGTACGGCGATGGGGATTTGGGA
TTGTGTATCAAGGTGTTGCGAGGCGTGAGTGTACGGCATGACGCGTGCTT
GCATGCATTGGGTCCGAAGGGCTCGTATGAAGGCCAGGGAGGAGGGGAGG
AGGTGGGATGGTTTGGGGATGGGGGAAGGCCGTGCTCGTTTCATTATGCC
TTCGGGGAGGACAGGGAGAGGGGGAATGGAGAGAAGGAGCGAGGGAGGGA
GGAGGGTAGGGTAGAAGGGGGGAAAGATGGGGCGGGTGATGAGCAGATTC
GGGCGTGGCATCAGAGGTACAATGTCGAGGAGTGAGGGAGGTGATTGTAA
ATATAGAAATGCATGTTGGTGGCAAGATGAGGTGAAATATGACAGCGCGT
AAGTAAAATAAAGCGATCAATTAAAGAGGTGAGACTTGATTCAAAAATGA
GTATATTTGTGGCAATGAGAGTTTTCTTGTTCTTTTTATTTTTCTTCTTT
TCT
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Coding sequence (CDS) from alignment at scaffold_21:434182..435684-

>mRNA_7829 ID=mRNA_7829|Name=jgi.p|Nanoce1779_2|654544|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_21:434182..435684- (Nannochloropsis oceanica)
ATGAACCCAGCATCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCACGGTGTCACGGCGG
GCCTCGGTCGTTGTCGCGGCGGACGTCGCGGACGTCTCGGACGTCGAACA
TGGCCAGCAACAGCAACCCCAGCAGCATCACCAAAACAAACAGCACCGCC
CGCGACACTCCTACCACCACCACCAGTACTACCAGCACGAGCAGAAGAAG
TACGACGTTTGTCACAATAAGGTGCGTCCTTTCTCAACACGCCAGCAGCA
GCAACGACTGGCAGTCGCACTCCTCCTAATCCTCCTTCTCCTCGGCATGG
TCAAATGGTTCCGGCTCTTTCCGCCTATCTCCAGCATTGCCTCGTCCTCT
ATCGCCTCCTCCATCTCATTGCCCTACACCTTGGCCAGCAACGGCCCCCA
TGCCACGGGTCTCGCCATCGGGGTGATAAGTGGTCCTCAACTCGCCCAAA
AACGTCGTGTTCGCCTCCTGCAAGACACCTGGTTCACCTCGCTTGACTCT
CAAAGAGACGGTGTCCTCGTATTTAGCGATGGGGCGGACGCAACAGTTCC
AGCAGTAGGCATTCCAGGGACGGGTTCCACATGGCAGGGGGCGCAGGATC
GGTGGTTGCCAGCTGTGACATATCTATCAATGGCTTTTCCCAAGGCAGAG
TGGTATGTCTTGGTGGACGACGACACGTTTTTGATTCCCAGCAACTTAAA
GGCAATGCTTTCAGAACAGAAAATAAAAAATAAAAAGAAGGGGGAAGAGG
AAATATACATAGGACGGACGATGTTTGTCACGCCGCAGGAGGGGAGATTG
CAAGGTCAGATGCTCCCCTTTGCCCATGGGGGATCGGGGGTGGTGTTGTC
CGCGGCGTTGGTCAGGGAGATGGTACCTTTAATTATGGAGGTATTGGTGG
GAGAGAGAGAGAGGTGTCAGGGGACGGGGTACGGCGATGGGGATTTGGGA
TTGTGTATCAAGGTGTTGCGAGGCGTGAGTGTACGGCATGACGCGTGCTT
GCATGCATTGGGTCCGAAGGGCTCGTATGAAGGCCAGGGAGGAGGGGAGG
AGGTGGGATGGTTTGGGGATGGGGGAAGGCCGTGCTCGTTTCATTATGCC
TTCGGGGAGGACAGGGAGAGGGGGAATGGAGAGAAGGAGCGAGGGAGGGA
GGAGGGTAGGGTAGAAGGGGGGAAAGATGGGGCGGGTGATGAGCAGATTC
GGGCGTGGCATCAGAGGTACAATGTCGAGGAGTGA
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Synonyms
Publications