jgi.p|Nanoce1779_2|532346, mRNA_8246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532346
Unique NamemRNA_8246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length945
Alignment locationscaffold_23:174491..175435 +

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Properties
Property NameValue
TranscriptId532432
TrackFilteredModels2
ProteinId532346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:174491..175435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532346gene_8246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532346mRNA_8246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8246CDS_8246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8246 ID=mRNA_8246|Name=jgi.p|Nanoce1779_2|532346|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
ATGGAGGGGCTGCGGCTTAAGGAAGAAGACGGTGGTGGCAACGGCCTGTA
TCACCAGCATGACGACGGCGTAGGGACCTTGGAGAGTAGCGACGAGGAGA
GGCAGGACGATAATCATTATGGTGAGGACACTTACTCGCAAAATGATGAG
GGCGCCGGAGAGGAGGACGAGGAGGAGGAAGGGGAGGTGGGTGTACCGGA
GTATGCTTGTCGGTACTGTGGCATCCATGATCCTGCATGTGTGGTCCGGT
GCGTCGAGAGCAATAAGTGGTTTTGTAATTCCCGGTGGAATACGACTGGG
TCGCACATTGTGCAGCATCTGGTCAAGGCGAGGAACAAGACTGTCTGCCT
TCACCCTGAGAGTCCCCTAGGAGATACGGTCCTCGAGTGCTACAATTGTG
GGTGCCGGAACGCGTTCCTCCTGGGTTTTATCCCCGCTAAGTCGGACTCC
GTGGTAGTGTTGCTTTGCCGGGAGCCATGTTTAAACATGGGGGCATTAAA
GGACATGGACTGGGATCTTGGGCAATGGATGCCCCTCATTGAAGATCGCG
CATTTTTGCCGTGGCTTGTCAAGGTTCCTTCGGAACAGGAGCAGCTGCGC
GCGCGTCAGATCAATGCGGGACAAATTAACAAGCTGGAGGAGTTGTGGAA
GGAGAATCCAGAAGCGACCTTGGAAGACTTGGAAAGGCAGACTGCCGAGG
GGGAGGAGGAGGGGGTGGCTGTGTTGCTGAAGTATGACGACGGATACCAT
TATCAGAATGTGCTGGCACCCTTGGTGAAGATGGAAGCGGACTACGATAA
GAAGATGAAGGAGCAGCAGACCCAGGAGGGGGTCAGCGTGACGTGGGACA
TAGGTTTGAGCAAACGTAAGGTTGCTACTTTCAAATTTAGACGTGACGAG
CAGGATTCGGGGTTGACAATCGGAGATGAGTTGAGGCTGAAGCTT
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protein sequence of jgi.p|Nanoce1779_2|532346

>mRNA_8246-protein ID=mRNA_8246-protein|Name=jgi.p|Nanoce1779_2|532346|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MEGLRLKEEDGGGNGLYHQHDDGVGTLESSDEERQDDNHYGEDTYSQNDE
GAGEEDEEEEGEVGVPEYACRYCGIHDPACVVRCVESNKWFCNSRWNTTG
SHIVQHLVKARNKTVCLHPESPLGDTVLECYNCGCRNAFLLGFIPAKSDS
VVVLLCREPCLNMGALKDMDWDLGQWMPLIEDRAFLPWLVKVPSEQEQLR
ARQINAGQINKLEELWKENPEATLEDLERQTAEGEEEGVAVLLKYDDGYH
YQNVLAPLVKMEADYDKKMKEQQTQEGVSVTWDIGLSKRKVATFKFRRDE
QDSGLTIGDELRLKL
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mRNA from alignment at scaffold_23:174491..175435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8246 ID=mRNA_8246|Name=jgi.p|Nanoce1779_2|532346|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_23:174491..175435+ (Nannochloropsis oceanica)
ATGGAGGGGCTGCGGCTTAAGGAAGAAGACGGTGGTGGCAACGGCCTGTA
TCACCAGCATGACGACGGCGTAGGGACCTTGGAGAGTAGCGACGAGGAGA
GGCAGGACGATAATCATTATGGTGAGGACACTTACTCGCAAAATGATGAG
GGCGCCGGAGAGGAGGACGAGGAGGAGGAAGGGGAGGTGGGTGTACCGGA
GTATGCTTGTCGGTACTGTGGCATCCATGATCCTGCATGTGTGGTCCGGT
GCGTCGAGAGCAATAAGTGGTTTTGTAATTCCCGGTGGAATACGACTGGG
TCGCACATTGTGCAGCATCTGGTCAAGGCGAGGAACAAGACTGTCTGCCT
TCACCCTGAGAGTCCCCTAGGAGATACGGTCCTCGAGTGCTACAATTGTG
GGTGCCGGAACGCGTTCCTCCTGGGTTTTATCCCCGCTAAGTCGGACTCC
GTGGTAGTGTTGCTTTGCCGGGAGCCATGTTTAAACATGGGGGCATTAAA
GGACATGGACTGGGATCTTGGGCAATGGATGCCCCTCATTGAAGATCGCG
CATTTTTGCCGTGGCTTGTCAAGGTTCCTTCGGAACAGGAGCAGCTGCGC
GCGCGTCAGATCAATGCGGGACAAATTAACAAGCTGGAGGAGTTGTGGAA
GGAGAATCCAGAAGCGACCTTGGAAGACTTGGAAAGGCAGACTGCCGAGG
GGGAGGAGGAGGGGGTGGCTGTGTTGCTGAAGTATGACGACGGATACCAT
TATCAGAATGTGCTGGCACCCTTGGTGAAGATGGAAGCGGACTACGATAA
GAAGATGAAGGAGCAGCAGACCCAGGAGGGGGTCAGCGTGACGTGGGACA
TAGGTTTGAGCAAACGTAAGGTTGCTACTTTCAAATTTAGACGTGACGAG
CAGGATTCGGGGTTGACAATCGGAGATGAGTTGAGGCTGAAGCTT
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Coding sequence (CDS) from alignment at scaffold_23:174491..175435+

>mRNA_8246 ID=mRNA_8246|Name=jgi.p|Nanoce1779_2|532346|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_23:174491..175435+ (Nannochloropsis oceanica)
ATGGAGGGGCTGCGGCTTAAGGAAGAAGACGGTGGTGGCAACGGCCTGTA
TCACCAGCATGACGACGGCGTAGGGACCTTGGAGAGTAGCGACGAGGAGA
GGCAGGACGATAATCATTATGGTGAGGACACTTACTCGCAAAATGATGAG
GGCGCCGGAGAGGAGGACGAGGAGGAGGAAGGGGAGGTGGGTGTACCGGA
GTATGCTTGTCGGTACTGTGGCATCCATGATCCTGCATGTGTGGTCCGGT
GCGTCGAGAGCAATAAGTGGTTTTGTAATTCCCGGTGGAATACGACTGGG
TCGCACATTGTGCAGCATCTGGTCAAGGCGAGGAACAAGACTGTCTGCCT
TCACCCTGAGAGTCCCCTAGGAGATACGGTCCTCGAGTGCTACAATTGTG
GGTGCCGGAACGCGTTCCTCCTGGGTTTTATCCCCGCTAAGTCGGACTCC
GTGGTAGTGTTGCTTTGCCGGGAGCCATGTTTAAACATGGGGGCATTAAA
GGACATGGACTGGGATCTTGGGCAATGGATGCCCCTCATTGAAGATCGCG
CATTTTTGCCGTGGCTTGTCAAGGTTCCTTCGGAACAGGAGCAGCTGCGC
GCGCGTCAGATCAATGCGGGACAAATTAACAAGCTGGAGGAGTTGTGGAA
GGAGAATCCAGAAGCGACCTTGGAAGACTTGGAAAGGCAGACTGCCGAGG
GGGAGGAGGAGGGGGTGGCTGTGTTGCTGAAGTATGACGACGGATACCAT
TATCAGAATGTGCTGGCACCCTTGGTGAAGATGGAAGCGGACTACGATAA
GAAGATGAAGGAGCAGCAGACCCAGGAGGGGGTCAGCGTGACGTGGGACA
TAGGTTTGAGCAAACGTAAGGTTGCTACTTTCAAATTTAGACGTGACGAG
CAGGATTCGGGGTTGACAATCGGAGATGAGTTGAGGCTGAAGCTT
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Synonyms
Publications