jgi.p|Nanoce1779_2|602742, mRNA_8178 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602742
Unique NamemRNA_8178
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length906
Alignment locationscaffold_25:349273..350178 +

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Properties
Property NameValue
TranscriptId602828
TrackFilteredModels2
ProteinId602742
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:349273..350178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602742gene_8178Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602742mRNA_8178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8178CDS_8178Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8178 ID=mRNA_8178|Name=jgi.p|Nanoce1779_2|602742|organism=Nannochloropsis oceanica|type=mRNA|length=906bp
AGCGGCCCGAAATGCTAGCTCTCCAATCCCGGGCCATCGACCAATGCACT
AAGGCGGTTAAGGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCTACTA
CTACAAAGAAAGCCTCCGTCTATTGATGGAATGGTTAACGCTCGAAAAGG
AGAATGGAGCACGAGAGGCCTTGAAAAAACGCATTCGGGGGTACATGGCG
CGGGCGGAGGAACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGCACCA
TGAGGAGAGCGGGGCGTCGGCGACGACGATGACAAACATTACTGACAAGG
GCACCAGAGCTGGTGGCAAAAGTAAGAATAGTAACAACACGATAATAGAT
GCCGGCGAGAACAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAACTTT
CCCTGCCACAGCCACCACGATCATCGGCACCGAGGTCGGGCCTCAGCAGG
ACGGCAACACCGCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCACGAT
ACAGACATTATCCATTATCGTATGGGATGCACGCCCGTAGTGCCACTCCC
TGATTCGGATGCTATTCATTCTAGTATCAATGCACTCTGTGAGGAAGAGC
TGAGGGAGCGGGAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGTGGCC
AAAGACCTCGAGCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGGAAAA
GCGAGTAGAGGCACAGAAGAGGGAGATACAGGGTGAGGATGAGAGGAAGA
AAGAGTCGACAAAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGCAGCG
GTGGGAGGGAAGCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGGCGCT
TATTCCTTCGAATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGTAGAA
AATAAG
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protein sequence of jgi.p|Nanoce1779_2|602742

>mRNA_8178-protein ID=mRNA_8178-protein|Name=jgi.p|Nanoce1779_2|602742|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MLALQSRAIDQCTKAVKADKAGEDRLALYYYKESLRLLMEWLTLEKENGA
REALKKRIRGYMARAEELKDVLTAAAQRHHEESGASATTMTNITDKGTRA
GGKSKNSNNTIIDAGENSNSGCSCGSNRTFPATATTIIGTEVGPQQDGNT
APIQVVEGEKEHDTDIIHYRMGCTPVVPLPDSDAIHSSINALCEEELRER
EAWLREWEAALVAKDLELQWRVKEVSTMEKRVEAQKREIQGEDERKKEST
KKKMGGVEGGEAAVGGKPGKDRVRNEEKALIPSNKRDKEETQGERRK*
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mRNA from alignment at scaffold_25:349273..350178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8178 ID=mRNA_8178|Name=jgi.p|Nanoce1779_2|602742|organism=Nannochloropsis oceanica|type=mRNA|length=906bp|location=Sequence derived from alignment at scaffold_25:349273..350178+ (Nannochloropsis oceanica)
AGCGGCCCGAAATGCTAGCTCTCCAATCCCGGGCCATCGACCAATGCACT
AAGGCGGTTAAGGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCTACTA
CTACAAAGAAAGCCTCCGTCTATTGATGGAATGGTTAACGCTCGAAAAGG
AGAATGGAGCACGAGAGGCCTTGAAAAAACGCATTCGGGGGTACATGGCG
CGGGCGGAGGAACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGCACCA
TGAGGAGAGCGGGGCGTCGGCGACGACGATGACAAACATTACTGACAAGG
GCACCAGAGCTGGTGGCAAAAGTAAGAATAGTAACAACACGATAATAGAT
GCCGGCGAGAACAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAACTTT
CCCTGCCACAGCCACCACGATCATCGGCACCGAGGTCGGGCCTCAGCAGG
ACGGCAACACCGCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCACGAT
ACAGACATTATCCATTATCGTATGGGATGCACGCCCGTAGTGCCACTCCC
TGATTCGGATGCTATTCATTCTAGTATCAATGCACTCTGTGAGGAAGAGC
TGAGGGAGCGGGAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGTGGCC
AAAGACCTCGAGCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGGAAAA
GCGAGTAGAGGCACAGAAGAGGGAGATACAGGGTGAGGATGAGAGGAAGA
AAGAGTCGACAAAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGCAGCG
GTGGGAGGGAAGCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGGCGCT
TATTCCTTCGAATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGTAGAA
AATAAG
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Coding sequence (CDS) from alignment at scaffold_25:349273..350178+

>mRNA_8178 ID=mRNA_8178|Name=jgi.p|Nanoce1779_2|602742|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_25:349273..350178+ (Nannochloropsis oceanica)
ATGCTAGCTCTCCAATCCCGGGCCATCGACCAATGCACTAAGGCGGTTAA
GGCAGACAAGGCAGGGGAAGACCGCCTCGCCCTCTACTACTACAAAGAAA
GCCTCCGTCTATTGATGGAATGGTTAACGCTCGAAAAGGAGAATGGAGCA
CGAGAGGCCTTGAAAAAACGCATTCGGGGGTACATGGCGCGGGCGGAGGA
ACTCAAGGATGTGTTGACTGCCGCGGCGCAGAGGCACCATGAGGAGAGCG
GGGCGTCGGCGACGACGATGACAAACATTACTGACAAGGGCACCAGAGCT
GGTGGCAAAAGTAAGAATAGTAACAACACGATAATAGATGCCGGCGAGAA
CAGCAACAGCGGGTGCAGCTGTGGTAGTAACAGAACTTTCCCTGCCACAG
CCACCACGATCATCGGCACCGAGGTCGGGCCTCAGCAGGACGGCAACACC
GCCCCTATCCAGGTTGTAGAGGGTGAGAAAGAGCACGATACAGACATTAT
CCATTATCGTATGGGATGCACGCCCGTAGTGCCACTCCCTGATTCGGATG
CTATTCATTCTAGTATCAATGCACTCTGTGAGGAAGAGCTGAGGGAGCGG
GAGGCATGGTTGCGAGAGTGGGAAGCAGCACTGGTGGCCAAAGACCTCGA
GCTGCAGTGGAGGGTGAAGGAGGTGAGCACAATGGAAAAGCGAGTAGAGG
CACAGAAGAGGGAGATACAGGGTGAGGATGAGAGGAAGAAAGAGTCGACA
AAGAAGAAGATGGGAGGTGTGGAGGGTGGCGAGGCAGCGGTGGGAGGGAA
GCCTGGAAAAGATCGAGTGAGAAATGAGGAGAAGGCGCTTATTCCTTCGA
ATAAAAGAGATAAGGAGGAGACACAGGGAGAGCGTAGAAAATAA
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Synonyms
Publications