jgi.p|Nanoce1779_2|604019, mRNA_8787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604019
Unique NamemRNA_8787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length925
Alignment locationscaffold_28:156644..157568 -

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Properties
Property NameValue
TranscriptId604105
TrackFilteredModels2
ProteinId604019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:156644..157568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604019gene_8787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604019mRNA_8787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8787CDS_8787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8787 ID=mRNA_8787|Name=jgi.p|Nanoce1779_2|604019|organism=Nannochloropsis oceanica|type=mRNA|length=925bp
AGAGGCGGGAAAGAGGAGGATGGCAGCGAAGTTGGTGGCAAGATCGGCGC
CGAGAAGGGCGCGCGAGGCGGGGGAGGTTGAGGACGGGGTGGAGATGTGG
TGAGAGGGGAGGAGGAAAAAGAAGAGGAGGAGAAGAAATCATCGAAGGCA
GATGTGTAGCGGAGGGTGGAGAAAGGGAGGGGGTAAGTGGTTGATAATGT
GGAAGATGGGGACTTGCACACGGTTTTCCTCGAAAAGAGCGCGTGAGAGG
GGGGAAGGGCGGAAGTACTGCTACGATTACTTAGATACTCCGCTTGCCGA
AAATACCAGGCTCAAGATCTGCGTATTGCTGCGGGCATGGGGCCATGCTA
TTCGATGGTTGTGGCTGTGGCTGCTGCGAGAGCCGATGAGTAGGCTTAGG
TCGAAGGGAGTGCAGTCTATATTATTACTACTCTCTACTGCAGAGTATAT
TGACGGGCTCTTTTCGCATATCCTGGGACGAGGCATGCCTACCAGAATGC
TGGCTTCGGGGTATTCGAGATTTTTGGTAATTTGTTCAGCAACAGATGCT
GCACTACCAGCACGGTGTATAACCAAAAAAAGTACAAAAACTTCTCCCCC
GTCCGGCCCTGGCCATCACTGCCACCACCCACTCCCACCCACACATACAT
AGAAGACATCAAACCAGCCTCCAAACGAACGATAACACCGAGAAACACAC
AGGGGTTTAATTGCTTTACGGGGATCATTGAGCATTAATTCTAAATGACC
ATGGATGAGGATGCGTGGGCTGCGACTGAGTCCTCTTCTTTTGTTTTTGA
GCCGTACGGACTATACAGAAGGTTATGTACGTTTTTCGCTCTTTCTGCCT
TTTTGGGGTTTTAACCACCATTACGAGCCTTGCCACCGACATGGTGACAT
CTCCTTCTATCATGTTTTGAGCACC
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protein sequence of jgi.p|Nanoce1779_2|604019

>mRNA_8787-protein ID=mRNA_8787-protein|Name=jgi.p|Nanoce1779_2|604019|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MCSGGWRKGGGKWLIMWKMGTCTRFSSKRARERGEGRKYCYDYLDTPLAE
NTRLKICVLLRAWGHAIRWLWLWLLREPMSRLRSKGVQSILLLLSTAEYI
DGLFSHILGRGMPTRMLASGYSRFLVICSATDAALPARCITKKSTKTSPP
SGPGHHCHHPLPPTHT*
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mRNA from alignment at scaffold_28:156644..157568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8787 ID=mRNA_8787|Name=jgi.p|Nanoce1779_2|604019|organism=Nannochloropsis oceanica|type=mRNA|length=925bp|location=Sequence derived from alignment at scaffold_28:156644..157568- (Nannochloropsis oceanica)
AGAGGCGGGAAAGAGGAGGATGGCAGCGAAGTTGGTGGCAAGATCGGCGC
CGAGAAGGGCGCGCGAGGCGGGGGAGGTTGAGGACGGGGTGGAGATGTGG
TGAGAGGGGAGGAGGAAAAAGAAGAGGAGGAGAAGAAATCATCGAAGGCA
GATGTGTAGCGGAGGGTGGAGAAAGGGAGGGGGTAAGTGGTTGATAATGT
GGAAGATGGGGACTTGCACACGGTTTTCCTCGAAAAGAGCGCGTGAGAGG
GGGGAAGGGCGGAAGTACTGCTACGATTACTTAGATACTCCGCTTGCCGA
AAATACCAGGCTCAAGATCTGCGTATTGCTGCGGGCATGGGGCCATGCTA
TTCGATGGTTGTGGCTGTGGCTGCTGCGAGAGCCGATGAGTAGGCTTAGG
TCGAAGGGAGTGCAGTCTATATTATTACTACTCTCTACTGCAGAGTATAT
TGACGGGCTCTTTTCGCATATCCTGGGACGAGGCATGCCTACCAGAATGC
TGGCTTCGGGGTATTCGAGATTTTTGGTAATTTGTTCAGCAACAGATGCT
GCACTACCAGCACGGTGTATAACCAAAAAAAGTACAAAAACTTCTCCCCC
GTCCGGCCCTGGCCATCACTGCCACCACCCACTCCCACCCACACATACAT
AGAAGACATCAAACCAGCCTCCAAACGAACGATAACACCGAGAAACACAC
AGGGGTTTAATTGCTTTACGGGGATCATTGAGCATTAATTCTAAATGACC
ATGGATGAGGATGCGTGGGCTGCGACTGAGTCCTCTTCTTTTGTTTTTGA
GCCGTACGGACTATACAGAAGGTTATGTACGTTTTTCGCTCTTTCTGCCT
TTTTGGGGTTTTAACCACCATTACGAGCCTTGCCACCGACATGGTGACAT
CTCCTTCTATCATGTTTTGAGCACC
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Coding sequence (CDS) from alignment at scaffold_28:156644..157568-

>mRNA_8787 ID=mRNA_8787|Name=jgi.p|Nanoce1779_2|604019|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_28:156644..157568- (Nannochloropsis oceanica)
ATGTGTAGCGGAGGGTGGAGAAAGGGAGGGGGTAAGTGGTTGATAATGTG
GAAGATGGGGACTTGCACACGGTTTTCCTCGAAAAGAGCGCGTGAGAGGG
GGGAAGGGCGGAAGTACTGCTACGATTACTTAGATACTCCGCTTGCCGAA
AATACCAGGCTCAAGATCTGCGTATTGCTGCGGGCATGGGGCCATGCTAT
TCGATGGTTGTGGCTGTGGCTGCTGCGAGAGCCGATGAGTAGGCTTAGGT
CGAAGGGAGTGCAGTCTATATTATTACTACTCTCTACTGCAGAGTATATT
GACGGGCTCTTTTCGCATATCCTGGGACGAGGCATGCCTACCAGAATGCT
GGCTTCGGGGTATTCGAGATTTTTGGTAATTTGTTCAGCAACAGATGCTG
CACTACCAGCACGGTGTATAACCAAAAAAAGTACAAAAACTTCTCCCCCG
TCCGGCCCTGGCCATCACTGCCACCACCCACTCCCACCCACACATACATA
G
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Synonyms
Publications