jgi.p|Nanoce1779_2|604241, mRNA_8850 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604241
Unique Name	mRNA_8850
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2527
Alignment location	scaffold_29:7275..9801 -

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Properties


Property Name	Value
TranscriptId	604327
Track	FilteredModels2
ProteinId	604241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:7275..9801 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604241	gene_8850	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604241	mRNA_8850-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8850	CDS_8850	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:7275..9801-
coding sequence from alignment at scaffold_29:7275..9801-

mRNA sequence

>mRNA_8850 ID=mRNA_8850|Name=jgi.p|Nanoce1779_2|604241|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp
CAGCCACAAGCCACACAGCAGTCTAAGAATCCAGCTACACACCAAGAGAT
GGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCGGC
TTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGCGC
GAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTACT
CGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCATCC
TCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGGGT
GCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATGCC
TTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGATGC
AGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCACC
GTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCTAA
GCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGAGA
GGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGGTA
CGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGATGA
AAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGAAC
CCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGCGG
GCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGAAC
CATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGCAG
TGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAGGG
TATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGCAA
GCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCTGG
CAGGCTTGAGGCCGGAAAGATGGGGCTCGTTGACATTGAAGAAATTAATT
GTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGTCG
TCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGAGG
CTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGTCC
GACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTGGG
TTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCGAC
AGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAGAG
GAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCTTG
GTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCGGG
TATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGGTG
AGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTTGG
AGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGAGA
AATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTAAC
TTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGGAT
TGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAATG
CCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGGGG
CTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGTT
GCACTGGTCGGCGGAGATGTCGGAGGTGCTGAGTCCGAGTGAGCGAGACG
TGGGAAGAAATGGTTTGAGTCGAGTTGACTCGACGAGGGATACGCGTATG
CGGGAGTTGGCGTTGGATGCCTATGTGCGCTTGTTGTTGCGACGGGTGTT
TTACGCAATTCCTATGAACATTCGAAACGTGATTTTGAATGAGTTTAGGC
GTGATTTGGTGTCCATGGTGGCGGAGAAATATAACGATGAAACGAAGCTT
CGTACGGTCATGTCGGAGGAGTTGTGGAAGATCCAACAGCGACAGCAAAG
GGTGGAACGAAAGGCGTCTTTGACAGATTTGATGAAGAAGTTGGACATGT
TGTAAGGGAGCGATAACGCTAGAAAAGGAAATTGCCAGGTAAAGGATGCG
AAACAGAGACAATGATGAAGAGGGGGAGGTCATGACAAAGAGTGGCATAC
AGCGGCAGACAGAAACAGACAGAGACAATGTCAAAGCGGATGCAATGAAA
AAGGGAGGCAGACAGGGATAGAAAGACGATTTATCCCCAAACGGATGATG
AAGTAAAAAACAACAAGACGGCCTTCAAGAGGGAAGAGACAGGATATATA
ACATGCACACACCAACTGGAAGAAGAATGTAAACTATTATGCACCCTTAC
AACTGCCGACCGCGTATATAGTGTCGC

protein sequence of jgi.p|Nanoce1779_2|604241

>mRNA_8850-protein ID=mRNA_8850-protein|Name=jgi.p|Nanoce1779_2|604241|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MASVLSAETKGAVSLRRLSWGSQSGKDAFDTSGRERKGSVDAAMGWELDV
LEAPLQAKTDFIDDLSILWPLNKQVKAPGIIVMGAHGAGKSSILHALTGM
PFPHSSASDSTRRPIKMQISSDPTTEATYALVSTVDPACSPDKTSTQRVS
KLEDLSRVLAKLNGDTERRIGEEERGQAIYVKVVRPSGTAYTVVDLPGVD
EKDPESVRVAEEFMRDEPNSLILVVLPLVDVFERAFPMALAKRVDPESRR
TIGVVTKTDLVQKEMEAVEKLQMTSHTGVSLPLGYIAVRLANEKEKHKTR
KQLLEKEHALFTTNPLLAGLRPERWGSLTLKKLIVDYQCNAIGHLVPDVC
RRLHAELRELEKEEEEEAAAEPEGKKGMGGKLLSDHQEFFRKLCTDANSL
GFEIGELALSSDTRKDRQLNLGARLTGAIKKHEEEARRALPAAVAGKVGP
WLNPSEGEVEGTTTEPRVYVSRETMSHDLFRKSVREVCGPVLRAYATALL
GEATLQLKEVTHVLVQEKFQEFPWLVESVKHEINLLLQKKKGEAERVLGR
IVASEMNWCFLNEADLNAVEREVALNMAGKSGGGLGFGKVAPSGEQPNQQ
LHWSAEMSEVLSPSERDVGRNGLSRVDSTRDTRMRELALDAYVRLLLRRV
FYAIPMNIRNVILNEFRRDLVSMVAEKYNDETKLRTVMSEELWKIQQRQQ
RVERKASLTDLMKKLDML*

mRNA from alignment at scaffold_29:7275..9801-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8850 ID=mRNA_8850|Name=jgi.p|Nanoce1779_2|604241|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp|location=Sequence derived from alignment at scaffold_29:7275..9801- (Nannochloropsis oceanica)
CAGCCACAAGCCACACAGCAGTCTAAGAATCCAGCTACACACCAAGAGAT
GGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCGGC
TTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGCGC
GAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTACT
CGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCATCC
TCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGGGT
GCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATGCC
TTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGATGC
AGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCACC
GTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCTAA
GCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGAGA
GGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGGTA
CGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGATGA
AAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGAAC
CCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGCGG
GCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGAAC
CATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGCAG
TGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAGGG
TATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGCAA
GCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCTGG
CAGGCTTGAGGCCGGAAAGATGGGGCTCGTTGACATTGAAGAAATTAATT
GTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGTCG
TCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGAGG
CTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGTCC
GACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTGGG
TTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCGAC
AGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAGAG
GAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCTTG
GTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCGGG
TATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGGTG
AGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTTGG
AGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGAGA
AATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTAAC
TTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGGAT
TGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAATG
CCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGGGG
CTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGTT
GCACTGGTCGGCGGAGATGTCGGAGGTGCTGAGTCCGAGTGAGCGAGACG
TGGGAAGAAATGGTTTGAGTCGAGTTGACTCGACGAGGGATACGCGTATG
CGGGAGTTGGCGTTGGATGCCTATGTGCGCTTGTTGTTGCGACGGGTGTT
TTACGCAATTCCTATGAACATTCGAAACGTGATTTTGAATGAGTTTAGGC
GTGATTTGGTGTCCATGGTGGCGGAGAAATATAACGATGAAACGAAGCTT
CGTACGGTCATGTCGGAGGAGTTGTGGAAGATCCAACAGCGACAGCAAAG
GGTGGAACGAAAGGCGTCTTTGACAGATTTGATGAAGAAGTTGGACATGT
TGTAAGGGAGCGATAACGCTAGAAAAGGAAATTGCCAGGTAAAGGATGCG
AAACAGAGACAATGATGAAGAGGGGGAGGTCATGACAAAGAGTGGCATAC
AGCGGCAGACAGAAACAGACAGAGACAATGTCAAAGCGGATGCAATGAAA
AAGGGAGGCAGACAGGGATAGAAAGACGATTTATCCCCAAACGGATGATG
AAGTAAAAAACAACAAGACGGCCTTCAAGAGGGAAGAGACAGGATATATA
ACATGCACACACCAACTGGAAGAAGAATGTAAACTATTATGCACCCTTAC
AACTGCCGACCGCGTATATAGTGTCGC

Coding sequence (CDS) from alignment at scaffold_29:7275..9801-

>mRNA_8850 ID=mRNA_8850|Name=jgi.p|Nanoce1779_2|604241|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at scaffold_29:7275..9801- (Nannochloropsis oceanica)
ATGGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCG
GCTTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGC
GCGAACGTAAGGGCTCCGTCGACGCGGCAATGGGATGGGAACTTGACGTA
CTCGAGGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCAT
CCTCTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGG
GTGCCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATG
CCTTTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGAT
GCAGATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCA
CCGTCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCT
AAGCTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGA
GAGGCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGG
TACGGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGAT
GAAAAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGA
ACCCAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGC
GGGCGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGA
ACCATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGC
AGTGGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAG
GGTATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGC
AAGCAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCT
GGCAGGCTTGAGGCCGGAAAGATGGGGCTCGTTGACATTGAAGAAATTAA
TTGTGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGT
CGTCGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGA
GGCTGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGT
CCGACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTG
GGTTTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCG
ACAGCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAG
AGGAGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCT
TGGTTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCG
GGTATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGG
TGAGGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTT
GGAGAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGA
GAAATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTA
ACTTGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGG
ATTGTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAA
TGCCGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGG
GGCTGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAG
TTGCACTGGTCGGCGGAGATGTCGGAGGTGCTGAGTCCGAGTGAGCGAGA
CGTGGGAAGAAATGGTTTGAGTCGAGTTGACTCGACGAGGGATACGCGTA
TGCGGGAGTTGGCGTTGGATGCCTATGTGCGCTTGTTGTTGCGACGGGTG
TTTTACGCAATTCCTATGAACATTCGAAACGTGATTTTGAATGAGTTTAG
GCGTGATTTGGTGTCCATGGTGGCGGAGAAATATAACGATGAAACGAAGC
TTCGTACGGTCATGTCGGAGGAGTTGTGGAAGATCCAACAGCGACAGCAA
AGGGTGGAACGAAAGGCGTCTTTGACAGATTTGATGAAGAAGTTGGACAT
GTTGTAA

Synonyms

Publications