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Properties
Property Name | Value |
TranscriptId | 576627 |
Track | FilteredModels2 |
ProteinId | 576541 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_3 | supercontig | scaffold_3:502067..504430 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_202 ID=mRNA_202|Name=jgi.p|Nanoce1779_2|576541|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp ACAGGGCTTCTCGTCCCCCTTGGTCTCCTTCTTCAAGTCCTAGGAGTGCC ACGGCGGCTCCGCCCACACAACGGTGTTCGACTAATCTGGCAGATTTCTG TAAGGTCGTCTACCTTCACAAGCCTCGTCTCTCTCTCCTCCCTTCCCACC GATCGAGATGGCCCTCGTCGAGGGTTTTTTGCTCAAAAAGTCCTATATTT CCTACCGGGTCCGGTATTTCCAGCTGGAAGGGTCCAATCTGTTGTACAAA GCGTCCAAGGAAGATATGAAGGAAAGGAATTATATGACCTTGACGGGGGA GAGTCAGGTGACAGAGTTCAGGGCGAAACGAGCCTTTCAAGTCACCACAG GGAACAAGACATGGTTCGTCAAGGCCGTCGACGAAGACAAGGAGGAGAAT CTGACCAACTGGGTGGCGGCCATCCGCGGGACCATCGCCCGGCTTAAGCA AGAGACGAGCTTACCTCAGGCGTCACAGCTGCCAGAATTTATACACCATT CTGTTGGGGGTCGGGATTTTGTGGTCGATTCGCGGTATACTGATCTCAAG CATCTCGGCAGTGGAGCCTACGGTATGGTCGTCTCCGCCTTCGACACGCA AACTGGCCAAAAAATCGCCATTAAAAGATGCGCCAACCTCTTCGTTGACC CCATTGATGCCCGAAAAATCGGGCGAGAAATTCGGATCATGTCTCAACTC GCCCACCCCAACATCATCAAGATCGTGGATGTCCTACCTCCTCAAACGGC GGATTTCGACGACGTGTACATGGTCGGTGAATTGATGGATGTGGACCTGC ACAGAGCGATTTACTATGGCCGGCCCTTGTCAGCGGAGCATGTGCAGTTT TTCCTGTATCAACTTCTGTGTGGAATCAAGTACATTCATTCTGTTGGGAT CGTGCATCGGGATTTGAAGCCCTCCAACATCCTCGTCAACTCCAACTGTG ACCTAAAAATAACCGACTTCGGGCTTGCGCGTCGTATCACGGACCAAACC CGAGACCTGACCGAGTACGTCGTCACCCGGTGGTATCGTGCGCCGGAAGT CATGCTTTCTTCTTGTCAGTACAACAAGAGCGTGGATATTTGGTCGGCCG GATGTATTTTCGCCGAGATGCTACAACGGAAACCTCTCTTTCCCGGCGAT AACTATCGACATGTCCTGCGTTTGATCACCAAGGTGACAGGCTCGGTCTC GGAGGCAGATCTGTGGTTTGTAAGCAATGCGAATGCCAAGGCCTACATGC TCCAGCGTTTGCCTGCGTATCGTAAGATAGACTTTCGCAATCACTTGTCG GGGGCCTCAGCGTCTGCATGCGAGTTGCTCTCCAAGATGCTAGAGTTCAA TTTCGTGAATCGAATATCTGTGGATGAGGCGTTAGCACATCCATATTTTG CTGACATTCGGGATCCGACTTGGGAGATTGAGGCGGGGTCAGACGTGTTG GAGTGGGGGGATATCGACACGGTGGAGCCCGCGCGCCTAGCGATGCAGCG GATTATCATGGAGGATGGCGCCAGGTTGAATATAAGGAATGCCGAGGTGC TAAAGGAGATCCAGAGAAAGATCCAGGAGTTGAGTAGGGAGGCGGGGACA ACGACGGGGATGAGGGCGGCTTGACGCTGGAGGAAGAAGAGGGAGGAGGA GGAGGAGGAGGAGGAGGAGAAGGAGAAGAACAAGCTTGCTTCCTTGTCAG TGGTGCTGGGAAGGAAAGAAGGCAACAA back to topprotein sequence of jgi.p|Nanoce1779_2|576541 >mRNA_202-protein ID=mRNA_202-protein|Name=jgi.p|Nanoce1779_2|576541|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp MALVEGFLLKKSYISYRVRYFQLEGSNLLYKASKEDMKERNYMTLTGESQ VTEFRAKRAFQVTTGNKTWFVKAVDEDKEENLTNWVAAIRGTIARLKQET SLPQASQLPEFIHHSVGGRDFVVDSRYTDLKHLGSGAYGMVVSAFDTQTG QKIAIKRCANLFVDPIDARKIGREIRIMSQLAHPNIIKIVDVLPPQTADF DDVYMVGELMDVDLHRAIYYGRPLSAEHVQFFLYQLLCGIKYIHSVGIVH RDLKPSNILVNSNCDLKITDFGLARRITDQTRDLTEYVVTRWYRAPEVML SSCQYNKSVDIWSAGCIFAEMLQRKPLFPGDNYRHVLRLITKVTGSVSEA DLWFVSNANAKAYMLQRLPAYRKIDFRNHLSGASASACELLSKMLEFNFV NRISVDEALAHPYFADIRDPTWEIEAGSDVLEWGDIDTVEPARLAMQRII MEDGARLNIRNAEVLKEIQRKIQELSREAGTTTGMRAA* back to topmRNA from alignment at scaffold_3:502067..504430+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_202 ID=mRNA_202|Name=jgi.p|Nanoce1779_2|576541|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at scaffold_3:502067..504430+ (Nannochloropsis oceanica) ACAGGGCTTCTCGTCCCCCTTGGTCTCCTTCTTCAAGTCCTAGGAGTGCC
ACGGCGGCTCCGCCCACACAACGGTGTTCGACTAATCTGGCAGATTTCTG
TAAGGTCGTCTACCTTCACAAGCCTCGTCTCTCTCTCCTCCCTTCCCACC
GATCGAGATGGCCCTCGTCGAGGGTTTTTTGCTCAAAAAGTCCTATATTT
CCTACCGGGTCCGGTATTTCCAGCTGGAAGGGTCCAATCTGTTGTACAAA
GCGTCCAAGGAAGATATGAAGGAAAGGAATTATATGACCTTGACGGGGGA
GAGTCAGGTGACAGAGTTCAGGGCGAAACGAGGTGAGTGATTGCTCCTCC
TTGACAGACAGGGAGGGACGGAAGGATAAAGAGCGGCGTTGGAGACACGC
AAATGCATGATTTAAGCTGCCTTCGTCCAAGCAGCTGGATTTAAAAAAGG
GAAGAGACAAACAGACTGAATGTGGACTGAAGATGCATGCCTACTGATTC
ACTGGCGAGAAGAATACTGCACCCTTTTCCCACTTCTCACAGTTCTGCAC
GTGACAAACAAATCCACAGACACCTCTTCTCTCAAAACCCGTCGAAGCGT
ACTCACATGTCCGATATAATCGACTCTCCCATTTCCCTTGCCCCGCACCC
AGCCTTTCAAGTCACCACAGGGAACAAGACATGGTTCGTCAAGGCCGTCG
ACGAAGACAAGGAGGAGAATCTGACCAACTGGGTGGCGGCCATCCGCGGG
ACCATCGCCCGGCTTAAGCAAGAGACGAGCTTACCTCAGGCGTCACAGCT
GCCAGAATTTATACACCATTCTGTTGGGGGTCGGGATTTTGTGGTCGATT
CGCGGTATACTGATCTCAAGTACGTTTTATTTGTTTTTTTTAGAGGGGAG
GGACGTGTTGCTGCTTGGGACGCCAATTTCGTGCTATTCATTGTTCTGCT
GTGCCGGGGTAAATATCTTCAATTGTGGCCGCAACGAAATGAAGCAGATA
TATCCAAGTCCCTTATCTTTCCCTCCCTCCCACCCTCCTTCTCATCCTTT
CTTTCCTCATTCCCAACCCTTCAGGCATCTCGGCAGTGGAGCCTACGGTA
TGGTCGTCTCCGCCTTCGACACGCAAACTGGCCAAAAAATCGCCATTAAA
AGATGCGCCAACCTCTTCGTTGACCCCATTGATGCCCGAAAAATCGGGCG
AGAAATTCGGATCATGTCTCAACTCGCCCACCCCAACATCATCAAGATCG
TGGATGTCCTACCTCCTCAAACGGCGGATTTCGACGACGTGTACATGGTC
GGTGAATTGATGGATGTGGACCTGCACAGAGCGATTTACTATGGCCGGCC
CTTGTCAGCGGAGCATGTGCAGTTTTTCCTGTATCAACTTCTGTGTGGAA
TCAAGTACATTCATTCTGTTGGGATCGTGCATCGGGATTTGAAGGTAGGA
ATGCCTCTCTCTCCTCCCTTTCTCTTTCCCCGCTATGTGGGTGCACCGAA
AAATATTTGATTGCTTCTTTCCTCTTTCCCTCTACTCCCTCCTGCCTCCC
TTTAGCCCTCCAACATCCTCGTCAACTCCAACTGTGACCTAAAAATAACC
GACTTCGGGCTTGCGCGTCGTATCACGGACCAAACCCGAGACCTGACCGA
GTACGTCGTCACCCGGTGGTATCGTGCGCCGGAAGTCATGCTTTCTTCTT
GTCAGTACAACAAGAGCGTGGATATTTGGTCGGCCGGATGTATTTTCGCC
GAGATGCTACAACGGAAACCTCTCTTTCCCGGCGATAACTATCGACATGT
CCTGCGTTTGATCACCAAGGTGACAGGCTCGGTCTCGGAGGCAGATCTGT
GGTTTGTAAGCAATGCGAATGCCAAGGCCTACATGCTCCAGCGTTTGCCT
GCGTATCGTAAGATAGACTTTCGCAATCACTTGTCGGGGGCCTCAGCGTC
TGCATGCGAGTTGCTCTCCAAGATGCTAGAGTTCAATTTCGTGAATCGAA
TATCTGTGGATGAGGCGTTAGCACATCCATATTTTGCTGACATTCGGGAT
CCGACTTGGGAGATTGAGGCGGGGTCAGACGTGTTGGAGTGGGGGGATAT
CGACACGGTGGAGCCCGCGCGCCTAGCGATGCAGCGGATTATCATGGAGG
ATGGCGCCAGGTTGAATATAAGGAATGCCGAGGTGCTAAAGGAGATCCAG
AGAAAGATCCAGGAGTTGAGTAGGGAGGCGGGGACAACGACGGGGATGAG
GGCGGCTTGACGCTGGAGGAAGAAGAGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAGAAGAACAAGCTTGCTTCCTTGTCAGTGGTGCTGGGAAGG
AAAGAAGGCAACAA back to topCoding sequence (CDS) from alignment at scaffold_3:502067..504430+ >mRNA_202 ID=mRNA_202|Name=jgi.p|Nanoce1779_2|576541|organism=Nannochloropsis oceanica|type=CDS|length=5868bp|location=Sequence derived from alignment at scaffold_3:502067..504430+ (Nannochloropsis oceanica) ATGGCCCTCGTCGAGGGTTTTTTGCTCAAAAAGTCCTATATTTCCTACCG GGTCCGGTATTTCCAGCTGGAAGGGTCCAATCTGTTGTACAAAGCGTCCA AGGAAGATATGAAGGAAAGGAATTATATGACCTTGACGGGGGAGAGTCAG GTGACAGAGTTCAGGGCGAAACGAGCCTTTCAAGTCACCACAGGGAACAA GACATGGTTCGTCAAGGCCGTCGACGAAGACAAGGAGGAGAATCTGACCA ACTGGGTGGCGGCCATCCGCGGGACCATCGCCCGGCTTAAGCAAGAGACG AGCTTACCTCAGGCGTCACAGCTGCCAGAATTTATACACCATTCTGTTGG GGGTCGGGATTTTGTGGTCGATTCGCGGTATACTGATCTCAAGCATCTCG GCAGTGGAGCCTACGGTATGGTCGTCTCCGCCTTCGACACGCAAACTGGC CAAAAAATCGCCATTAAAAGATGCGCCAACCTCTTCGTTGACCCCATTGA TGCCCGAAAAATCGGGCGAGAAATTCGGATCATGTCTCAACTCGCCCACC CCAACATCATCAAGATCGTGGATGTCCTACCTCCTCAAACGGCGGATTTC GACGACGTGTACATGGTCGGTGAATTGATGGATGTGGACCTGCACAGAGC GATTTACTATGGCCGGCCCTTGTCAGCGGAGCATGTGCAGTTTTTCCTGT ATCAACTTCTGTGTGGAATCAAGTACATTCATTCTGTTGGGATCGTGCAT CGGGATTTGAAGCCCTCCAACATCCTCGTCAACTCCAACTGTGACCTAAA AATAACCGACTTCGGGCTTGCGCGTCGTATCACGGACCAAACCCGAGACC TGACCGAGTACGTCGTCACCCGGTGGTATCGTGCGCCGGAAGTCATGCTT TCTTCTTGTCAGTACAACAAGAGCGTGGATATTTGGTCGGCCGGATGTAT TTTCGCCGAGATGCTACAACGGAAACCTCTCTTTCCCGGCGATAACTATC GACATGTCCTGCGTTTGATCACCAAGGTGACAGGCTCGGTCTCGGAGGCA GATCTGTGGTTTGTAAGCAATGCGAATGCCAAGGCCTACATGCTCCAGCG TTTGCCTGCGTATCGTAAGATAGACTTTCGCAATCACTTGTCGGGGGCCT CAGCGTCTGCATGCGAGTTGCTCTCCAAGATGCTAGAGTTCAATTTCGTG AATCGAATATCTGTGGATGAGGCGTTAGCACATCCATATTTTGCTGACAT TCGGGATCCGACTTGGGAGATTGAGGCGGGGTCAGACGTGTTGGAGTGGG GGGATATCGACACGGTGGAGCCCGCGCGCCTAGCGATGCAGCGGATTATC ATGGAGGATGGCGCCAGGTTGAATATAAGGAATGCCGAGGTGCTAAAGGA GATCCAGAGAAAGATCCAGGAGTTGAGTAGGGAGGCGGGGACAACGACGG GGATGAGGGCGGCTTGAATGGCCCTCGTCGAGGGTTTTTTGCTCAAAAAG TCCTATATTTCCTACCGGGTCCGGTATTTCCAGCTGGAAGGGTCCAATCT GTTGTACAAAGCGTCCAAGGAAGATATGAAGGAAAGGAATTATATGACCT TGACGGGGGAGAGTCAGGTGACAGAGTTCAGGGCGAAACGAGCCTTTCAA GTCACCACAGGGAACAAGACATGGTTCGTCAAGGCCGTCGACGAAGACAA GGAGGAGAATCTGACCAACTGGGTGGCGGCCATCCGCGGGACCATCGCCC GGCTTAAGCAAGAGACGAGCTTACCTCAGGCGTCACAGCTGCCAGAATTT ATACACCATTCTGTTGGGGGTCGGGATTTTGTGGTCGATTCGCGGTATAC TGATCTCAAGCATCTCGGCAGTGGAGCCTACGGTATGGTCGTCTCCGCCT TCGACACGCAAACTGGCCAAAAAATCGCCATTAAAAGATGCGCCAACCTC TTCGTTGACCCCATTGATGCCCGAAAAATCGGGCGAGAAATTCGGATCAT GTCTCAACTCGCCCACCCCAACATCATCAAGATCGTGGATGTCCTACCTC CTCAAACGGCGGATTTCGACGACGTGTACATGGTCGGTGAATTGATGGAT GTGGACCTGCACAGAGCGATTTACTATGGCCGGCCCTTGTCAGCGGAGCA TGTGCAGTTTTTCCTGTATCAACTTCTGTGTGGAATCAAGTACATTCATT CTGTTGGGATCGTGCATCGGGATTTGAAGCCCTCCAACATCCTCGTCAAC TCCAACTGTGACCTAAAAATAACCGACTTCGGGCTTGCGCGTCGTATCAC GGACCAAACCCGAGACCTGACCGAGTACGTCGTCACCCGGTGGTATCGTG CGCCGGAAGTCATGCTTTCTTCTTGTCAGTACAACAAGAGCGTGGATATT TGGTCGGCCGGATGTATTTTCGCCGAGATGCTACAACGGAAACCTCTCTT TCCCGGCGATAACTATCGACATGTCCTGCGTTTGATCACCAAGGTGACAG GCTCGGTCTCGGAGGCAGATCTGTGGTTTGTAAGCAATGCGAATGCCAAG GCCTACATGCTCCAGCGTTTGCCTGCGTATCGTAAGATAGACTTTCGCAA TCACTTGTCGGGGGCCTCAGCGTCTGCATGCGAGTTGCTCTCCAAGATGC TAGAGTTCAATTTCGTGAATCGAATATCTGTGGATGAGGCGTTAGCACAT CCATATTTTGCTGACATTCGGGATCCGACTTGGGAGATTGAGGCGGGGTC AGACGTGTTGGAGTGGGGGGATATCGACACGGTGGAGCCCGCGCGCCTAG CGATGCAGCGGATTATCATGGAGGATGGCGCCAGGTTGAATATAAGGAAT GCCGAGGTGCTAAAGGAGATCCAGAGAAAGATCCAGGAGTTGAGTAGGGA GGCGGGGACAACGACGGGGATGAGGGCGGCTTGAATGGCCCTCGTCGAGG GTTTTTTGCTCAAAAAGTCCTATATTTCCTACCGGGTCCGGTATTTCCAG CTGGAAGGGTCCAATCTGTTGTACAAAGCGTCCAAGGAAGATATGAAGGA AAGGAATTATATGACCTTGACGGGGGAGAGTCAGGTGACAGAGTTCAGGG CGAAACGAGCCTTTCAAGTCACCACAGGGAACAAGACATGGTTCGTCAAG GCCGTCGACGAAGACAAGGAGGAGAATCTGACCAACTGGGTGGCGGCCAT CCGCGGGACCATCGCCCGGCTTAAGCAAGAGACGAGCTTACCTCAGGCGT CACAGCTGCCAGAATTTATACACCATTCTGTTGGGGGTCGGGATTTTGTG GTCGATTCGCGGTATACTGATCTCAAGCATCTCGGCAGTGGAGCCTACGG TATGGTCGTCTCCGCCTTCGACACGCAAACTGGCCAAAAAATCGCCATTA AAAGATGCGCCAACCTCTTCGTTGACCCCATTGATGCCCGAAAAATCGGG CGAGAAATTCGGATCATGTCTCAACTCGCCCACCCCAACATCATCAAGAT CGTGGATGTCCTACCTCCTCAAACGGCGGATTTCGACGACGTGTACATGG TCGGTGAATTGATGGATGTGGACCTGCACAGAGCGATTTACTATGGCCGG CCCTTGTCAGCGGAGCATGTGCAGTTTTTCCTGTATCAACTTCTGTGTGG AATCAAGTACATTCATTCTGTTGGGATCGTGCATCGGGATTTGAAGCCCT CCAACATCCTCGTCAACTCCAACTGTGACCTAAAAATAACCGACTTCGGG CTTGCGCGTCGTATCACGGACCAAACCCGAGACCTGACCGAGTACGTCGT CACCCGGTGGTATCGTGCGCCGGAAGTCATGCTTTCTTCTTGTCAGTACA ACAAGAGCGTGGATATTTGGTCGGCCGGATGTATTTTCGCCGAGATGCTA CAACGGAAACCTCTCTTTCCCGGCGATAACTATCGACATGTCCTGCGTTT GATCACCAAGGTGACAGGCTCGGTCTCGGAGGCAGATCTGTGGTTTGTAA GCAATGCGAATGCCAAGGCCTACATGCTCCAGCGTTTGCCTGCGTATCGT AAGATAGACTTTCGCAATCACTTGTCGGGGGCCTCAGCGTCTGCATGCGA GTTGCTCTCCAAGATGCTAGAGTTCAATTTCGTGAATCGAATATCTGTGG ATGAGGCGTTAGCACATCCATATTTTGCTGACATTCGGGATCCGACTTGG GAGATTGAGGCGGGGTCAGACGTGTTGGAGTGGGGGGATATCGACACGGT GGAGCCCGCGCGCCTAGCGATGCAGCGGATTATCATGGAGGATGGCGCCA GGTTGAATATAAGGAATGCCGAGGTGCTAAAGGAGATCCAGAGAAAGATC CAGGAGTTGAGTAGGGAGGCGGGGACAACGACGGGGATGAGGGCGGCTTG AATGGCCCTCGTCGAGGGTTTTTTGCTCAAAAAGTCCTATATTTCCTACC GGGTCCGGTATTTCCAGCTGGAAGGGTCCAATCTGTTGTACAAAGCGTCC AAGGAAGATATGAAGGAAAGGAATTATATGACCTTGACGGGGGAGAGTCA GGTGACAGAGTTCAGGGCGAAACGAGCCTTTCAAGTCACCACAGGGAACA AGACATGGTTCGTCAAGGCCGTCGACGAAGACAAGGAGGAGAATCTGACC AACTGGGTGGCGGCCATCCGCGGGACCATCGCCCGGCTTAAGCAAGAGAC GAGCTTACCTCAGGCGTCACAGCTGCCAGAATTTATACACCATTCTGTTG GGGGTCGGGATTTTGTGGTCGATTCGCGGTATACTGATCTCAAGCATCTC GGCAGTGGAGCCTACGGTATGGTCGTCTCCGCCTTCGACACGCAAACTGG CCAAAAAATCGCCATTAAAAGATGCGCCAACCTCTTCGTTGACCCCATTG ATGCCCGAAAAATCGGGCGAGAAATTCGGATCATGTCTCAACTCGCCCAC CCCAACATCATCAAGATCGTGGATGTCCTACCTCCTCAAACGGCGGATTT CGACGACGTGTACATGGTCGGTGAATTGATGGATGTGGACCTGCACAGAG CGATTTACTATGGCCGGCCCTTGTCAGCGGAGCATGTGCAGTTTTTCCTG TATCAACTTCTGTGTGGAATCAAGTACATTCATTCTGTTGGGATCGTGCA TCGGGATTTGAAGCCCTCCAACATCCTCGTCAACTCCAACTGTGACCTAA AAATAACCGACTTCGGGCTTGCGCGTCGTATCACGGACCAAACCCGAGAC CTGACCGAGTACGTCGTCACCCGGTGGTATCGTGCGCCGGAAGTCATGCT TTCTTCTTGTCAGTACAACAAGAGCGTGGATATTTGGTCGGCCGGATGTA TTTTCGCCGAGATGCTACAACGGAAACCTCTCTTTCCCGGCGATAACTAT CGACATGTCCTGCGTTTGATCACCAAGGTGACAGGCTCGGTCTCGGAGGC AGATCTGTGGTTTGTAAGCAATGCGAATGCCAAGGCCTACATGCTCCAGC GTTTGCCTGCGTATCGTAAGATAGACTTTCGCAATCACTTGTCGGGGGCC TCAGCGTCTGCATGCGAGTTGCTCTCCAAGATGCTAGAGTTCAATTTCGT GAATCGAATATCTGTGGATGAGGCGTTAGCACATCCATATTTTGCTGACA TTCGGGATCCGACTTGGGAGATTGAGGCGGGGTCAGACGTGTTGGAGTGG GGGGATATCGACACGGTGGAGCCCGCGCGCCTAGCGATGCAGCGGATTAT CATGGAGGATGGCGCCAGGTTGAATATAAGGAATGCCGAGGTGCTAAAGG AGATCCAGAGAAAGATCCAGGAGTTGAGTAGGGAGGCGGGGACAACGACG GGGATGAGGGCGGCTTGA back to top
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