jgi.p|Nanoce1779_2|577556, mRNA_519 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577556
Unique Name	mRNA_519
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2384
Alignment location	scaffold_3:1258184..1260567 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577642
Track	FilteredModels2
ProteinId	577556

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1258184..1260567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577556	gene_519	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577556	mRNA_519-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_519	CDS_519	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1258184..1260567+
coding sequence from alignment at scaffold_3:1258184..1260567+

mRNA sequence

>mRNA_519 ID=mRNA_519|Name=jgi.p|Nanoce1779_2|577556|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp
ACAGGCAAAGTCCTTGACACATGATCCTGGCCTCTGCAAACGCCTTGCGT
TCGGTGGGGGCAGATGGGGGGCTTTCAAGCGCTTCTATTCCGGCACAGGT
GGCACGGATGTAGCGGGCGTTCCGGCTCACAGCACACATTCGCAGCACAG
AGCATCTCTCCACCTCTCTATCGATAGTTGCTCGCCTCACCGCGACTCAT
TTCCCCTCCTCCTTCCCCCTTTTCCCCTTTGTATGTGTGTGTGATGTGTG
TGGGCGTGCTGGCAGAGACACACACATCACCACAGGGACGACCCAGCGCT
TTCCTTCCAGCACGCTGCACCCTTCCCCATAGCATTTGTTGTTGGCAGCG
TGCATGCGTGTGAGCACCCTGCTTCTGCTGTCTTTTCTCAGCCTCGGCTT
GCCCAGCAGGTGGGCTCTCGTCTAATGTGTGTGTGCGTGTTCGCACGTGT
TCGAGAGGCGGGGCTTTATCATTTCCCCCCTTCATATCTTGCCTTGAAGC
AAGTCAGAGTCATGCTTCTCAGTCTCTTTTCTCTCTTATAGAAAGTTGTG
GCAGGCGTGTGTATTTTTCCCTTTCTGCCCGCGGGTTCCGCATTCTTCCG
GACATTGTACGCCACACCACACATTGCATCACACCATCACCGACTCACCT
TCCACCCATCCTCCTCCCTCCACTTCAAAACACAGCACTAGCACTTCCAA
GTCGTCGTCACCGCCATCCTTCTTTACGCCCGGCAGCACCATGGCCGCCG
TCCCTTCGAAGAATCAGGCCGAGCTCCTGCTCAAGGTCCAAGAAGCCATC
AAGGCCAGCCTCCCGGATAAGGCCCTCGCCGACACGGTCAAGTCCGAGGT
CAACCACGCCATGGGCGCCGATTCCGAGCCCGACTCTCTCAAGGAGATGC
ACGACGGTATCGTCTACAAATTCCTCGTCAACGGCGAATGGCGTGTCTCC
ACCTCCGGCCGCACCATCCAAAACCTCACCCCCTACGATGAGACTGTCTG
CTATGAAGTCCAAGCCTGCACTCGCGAGGAGATCGACGAAGCCTACACTT
CTGCCCATGCTGCGCAACGCGTATGGGCCAAGACCCCCCTTTGGAAGCGC
GCCGAGCTCCTCCACAAAGCTGCCACGGTCCTCCGTCAATACGCCTCCCT
AATCGCCACTCCTGTCCTCCGAGAGGTGGGAAAGAACCGCAAGGCCGCCC
GTGATGAGGTGGTGCGTACCGCGGAGCTGCTTGACTATGCGGCTGAGGAG
GGTCTGCGTATTAATGGCGAGGTGCTTGCGTCCGATGCGTGGGTGGGGCA
AAAACGAAACAAGCTTGCCATCGTCGAACGTGTACCCGTCGGCGTCGTCC
TTTGCATTCCCCCCTTCAACTACCCCATTAATCTCTGTGGCTCGAAGATC
GGCCCTGCCCTTATTGCCGGTAACGCCGTCGTCGTCAAGACCCCCACGCA
AGGCGCCGTCTCCACCCTCCACCTCGGCGCGGCCTTCAAGATCGCAGGTG
CCCCCCCCGGCCTTGTCAATGTGGTGACGGGCAAGGGATCGGAGATTGGG
GATTACCTGGTGCAACATCCCGGAGCCAACCTGATTTCCTTCACGGGGGG
TTCCACTGGGATTGATGTGTCGAAGAAGGCAGGCATGGTGCCGTTGCAGA
TGGAACTCGGCGGCAAGGACGCCTGCATCGTCCTCCCTGATGCCGACCTC
GATCTGGCTTCCTCTGCCATTGTAAAGGGTGGGTTCTCCTATTCCGGACA
GAGGTGCACGGCTGTCAAAATTGTCTTCGCCACCGCTGAGATTGCCGATG
CGTTGCTCGAGAAGGTCCTGGCGAAGATGGCCAAGCTCACGGTGGGACAC
CCGGAGGACAATGTGGACATCACAGCCGTCATCAACCGCAAGTCAGCCGA
TTACATCGAGAGCTTGGTGAAGGATGCGGAGAAGAAGGGGGCGGTCCTCA
CCACCCCTTACACCCGCGTGGGCAATCTGATTCACCCCCTCATCATCGAC
CACGTCAAGGAGGACATGAAGATCCACTGGGAGGAGCCGTTCGGGCCCGT
CCTGCCCTTCGTCCGCGTCGCCGATGCCACGGACGCAGTTGCACTGGCGA
ACAAGTCCAGCATGGGCTTGCAGGGCTGTGTCTTTACGCAAGACATCAAC
CGTGCCATTCTGGTGGCGAATGAGTTGGCGGCAGGAACGGTGCAGATTAA
TGGCCCCCCGGCCCGTGGACCCGACCACTTCCCGTTTACGGGTTTCAAGG
ATTCGGGGATTGGAGCACAGGGGATTAAGTACTCGATCGAGAGTATGAGC
AAGGTGAAGAGCTTTGTTATCAACCTGCCGGAGGCGGCGCATCCCCAGGG
CCATTAAGGGGAGGATGAGGGGGAAGGGGGGAAA

protein sequence of jgi.p|Nanoce1779_2|577556

>mRNA_519-protein ID=mRNA_519-protein|Name=jgi.p|Nanoce1779_2|577556|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MAAVPSKNQAELLLKVQEAIKASLPDKALADTVKSEVNHAMGADSEPDSL
KEMHDGIVYKFLVNGEWRVSTSGRTIQNLTPYDETVCYEVQACTREEIDE
AYTSAHAAQRVWAKTPLWKRAELLHKAATVLRQYASLIATPVLREVGKNR
KAARDEVVRTAELLDYAAEEGLRINGEVLASDAWVGQKRNKLAIVERVPV
GVVLCIPPFNYPINLCGSKIGPALIAGNAVVVKTPTQGAVSTLHLGAAFK
IAGAPPGLVNVVTGKGSEIGDYLVQHPGANLISFTGGSTGIDVSKKAGMV
PLQMELGGKDACIVLPDADLDLASSAIVKGGFSYSGQRCTAVKIVFATAE
IADALLEKVLAKMAKLTVGHPEDNVDITAVINRKSADYIESLVKDAEKKG
AVLTTPYTRVGNLIHPLIIDHVKEDMKIHWEEPFGPVLPFVRVADATDAV
ALANKSSMGLQGCVFTQDINRAILVANELAAGTVQINGPPARGPDHFPFT
GFKDSGIGAQGIKYSIESMSKVKSFVINLPEAAHPQGH*

mRNA from alignment at scaffold_3:1258184..1260567+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_519 ID=mRNA_519|Name=jgi.p|Nanoce1779_2|577556|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at scaffold_3:1258184..1260567+ (Nannochloropsis oceanica)
ACAGGCAAAGTCCTTGACACATGATCCTGGCCTCTGCAAACGCCTTGCGT
TCGGTGGGGGCAGATGGGGGGCTTTCAAGCGCTTCTATTCCGGCACAGGT
GGCACGGATGTAGCGGGCGTTCCGGCTCACAGCACACATTCGCAGCACAG
AGCATCTCTCCACCTCTCTATCGATAGTTGCTCGCCTCACCGCGACTCAT
TTCCCCTCCTCCTTCCCCCTTTTCCCCTTTGTATGTGTGTGTGATGTGTG
TGGGCGTGCTGGCAGAGACACACACATCACCACAGGGACGACCCAGCGCT
TTCCTTCCAGCACGCTGCACCCTTCCCCATAGCATTTGTTGTTGGCAGCG
TGCATGCGTGTGAGCACCCTGCTTCTGCTGTCTTTTCTCAGCCTCGGCTT
GCCCAGCAGGTGGGCTCTCGTCTAATGTGTGTGTGCGTGTTCGCACGTGT
TCGAGAGGCGGGGCTTTATCATTTCCCCCCTTCATATCTTGCCTTGAAGC
AAGTCAGAGTCATGCTTCTCAGTCTCTTTTCTCTCTTATAGAAAGTTGTG
GCAGGCGTGTGTATTTTTCCCTTTCTGCCCGCGGGTTCCGCATTCTTCCG
GACATTGTACGCCACACCACACATTGCATCACACCATCACCGACTCACCT
TCCACCCATCCTCCTCCCTCCACTTCAAAACACAGCACTAGCACTTCCAA
GTCGTCGTCACCGCCATCCTTCTTTACGCCCGGCAGCACCATGGCCGCCG
TCCCTTCGAAGAATCAGGCCGAGCTCCTGCTCAAGGTCCAAGAAGCCATC
AAGGCCAGCCTCCCGGATAAGGCCCTCGCCGACACGGTCAAGTCCGAGGT
CAACCACGCCATGGGCGCCGATTCCGAGCCCGACTCTCTCAAGGAGATGC
ACGACGGTATCGTCTACAAATTCCTCGTCAACGGCGAATGGCGTGTCTCC
ACCTCCGGCCGCACCATCCAAAACCTCACCCCCTACGATGAGACTGTCTG
CTATGAAGTCCAAGCCTGCACTCGCGAGGAGATCGACGAAGCCTACACTT
CTGCCCATGCTGCGCAACGCGTATGGGCCAAGACCCCCCTTTGGAAGCGC
GCCGAGCTCCTCCACAAAGCTGCCACGGTCCTCCGTCAATACGCCTCCCT
AATCGCCACTCCTGTCCTCCGAGAGGTGGGAAAGAACCGCAAGGCCGCCC
GTGATGAGGTGGTGCGTACCGCGGAGCTGCTTGACTATGCGGCTGAGGAG
GGTCTGCGTATTAATGGCGAGGTGCTTGCGTCCGATGCGTGGGTGGGGCA
AAAACGAAACAAGCTTGCCATCGTCGAACGTGTACCCGTCGGCGTCGTCC
TTTGCATTCCCCCCTTCAACTACCCCATTAATCTCTGTGGCTCGAAGATC
GGCCCTGCCCTTATTGCCGGTAACGCCGTCGTCGTCAAGACCCCCACGCA
AGGCGCCGTCTCCACCCTCCACCTCGGCGCGGCCTTCAAGATCGCAGGTG
CCCCCCCCGGCCTTGTCAATGTGGTGACGGGCAAGGGATCGGAGATTGGG
GATTACCTGGTGCAACATCCCGGAGCCAACCTGATTTCCTTCACGGGGGG
TTCCACTGGGATTGATGTGTCGAAGAAGGCAGGCATGGTGCCGTTGCAGA
TGGAACTCGGCGGCAAGGACGCCTGCATCGTCCTCCCTGATGCCGACCTC
GATCTGGCTTCCTCTGCCATTGTAAAGGGTGGGTTCTCCTATTCCGGACA
GAGGTGCACGGCTGTCAAAATTGTCTTCGCCACCGCTGAGATTGCCGATG
CGTTGCTCGAGAAGGTCCTGGCGAAGATGGCCAAGCTCACGGTGGGACAC
CCGGAGGACAATGTGGACATCACAGCCGTCATCAACCGCAAGTCAGCCGA
TTACATCGAGAGCTTGGTGAAGGATGCGGAGAAGAAGGGGGCGGTCCTCA
CCACCCCTTACACCCGCGTGGGCAATCTGATTCACCCCCTCATCATCGAC
CACGTCAAGGAGGACATGAAGATCCACTGGGAGGAGCCGTTCGGGCCCGT
CCTGCCCTTCGTCCGCGTCGCCGATGCCACGGACGCAGTTGCACTGGCGA
ACAAGTCCAGCATGGGCTTGCAGGGCTGTGTCTTTACGCAAGACATCAAC
CGTGCCATTCTGGTGGCGAATGAGTTGGCGGCAGGAACGGTGCAGATTAA
TGGCCCCCCGGCCCGTGGACCCGACCACTTCCCGTTTACGGGTTTCAAGG
ATTCGGGGATTGGAGCACAGGGGATTAAGTACTCGATCGAGAGTATGAGC
AAGGTGAAGAGCTTTGTTATCAACCTGCCGGAGGCGGCGCATCCCCAGGG
CCATTAAGGGGAGGATGAGGGGGAAGGGGGGAAA

Coding sequence (CDS) from alignment at scaffold_3:1258184..1260567+

>mRNA_519 ID=mRNA_519|Name=jgi.p|Nanoce1779_2|577556|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at scaffold_3:1258184..1260567+ (Nannochloropsis oceanica)
ATGGCCGCCGTCCCTTCGAAGAATCAGGCCGAGCTCCTGCTCAAGGTCCA
AGAAGCCATCAAGGCCAGCCTCCCGGATAAGGCCCTCGCCGACACGGTCA
AGTCCGAGGTCAACCACGCCATGGGCGCCGATTCCGAGCCCGACTCTCTC
AAGGAGATGCACGACGGTATCGTCTACAAATTCCTCGTCAACGGCGAATG
GCGTGTCTCCACCTCCGGCCGCACCATCCAAAACCTCACCCCCTACGATG
AGACTGTCTGCTATGAAGTCCAAGCCTGCACTCGCGAGGAGATCGACGAA
GCCTACACTTCTGCCCATGCTGCGCAACGCGTATGGGCCAAGACCCCCCT
TTGGAAGCGCGCCGAGCTCCTCCACAAAGCTGCCACGGTCCTCCGTCAAT
ACGCCTCCCTAATCGCCACTCCTGTCCTCCGAGAGGTGGGAAAGAACCGC
AAGGCCGCCCGTGATGAGGTGGTGCGTACCGCGGAGCTGCTTGACTATGC
GGCTGAGGAGGGTCTGCGTATTAATGGCGAGGTGCTTGCGTCCGATGCGT
GGGTGGGGCAAAAACGAAACAAGCTTGCCATCGTCGAACGTGTACCCGTC
GGCGTCGTCCTTTGCATTCCCCCCTTCAACTACCCCATTAATCTCTGTGG
CTCGAAGATCGGCCCTGCCCTTATTGCCGGTAACGCCGTCGTCGTCAAGA
CCCCCACGCAAGGCGCCGTCTCCACCCTCCACCTCGGCGCGGCCTTCAAG
ATCGCAGGTGCCCCCCCCGGCCTTGTCAATGTGGTGACGGGCAAGGGATC
GGAGATTGGGGATTACCTGGTGCAACATCCCGGAGCCAACCTGATTTCCT
TCACGGGGGGTTCCACTGGGATTGATGTGTCGAAGAAGGCAGGCATGGTG
CCGTTGCAGATGGAACTCGGCGGCAAGGACGCCTGCATCGTCCTCCCTGA
TGCCGACCTCGATCTGGCTTCCTCTGCCATTGTAAAGGGTGGGTTCTCCT
ATTCCGGACAGAGGTGCACGGCTGTCAAAATTGTCTTCGCCACCGCTGAG
ATTGCCGATGCGTTGCTCGAGAAGGTCCTGGCGAAGATGGCCAAGCTCAC
GGTGGGACACCCGGAGGACAATGTGGACATCACAGCCGTCATCAACCGCA
AGTCAGCCGATTACATCGAGAGCTTGGTGAAGGATGCGGAGAAGAAGGGG
GCGGTCCTCACCACCCCTTACACCCGCGTGGGCAATCTGATTCACCCCCT
CATCATCGACCACGTCAAGGAGGACATGAAGATCCACTGGGAGGAGCCGT
TCGGGCCCGTCCTGCCCTTCGTCCGCGTCGCCGATGCCACGGACGCAGTT
GCACTGGCGAACAAGTCCAGCATGGGCTTGCAGGGCTGTGTCTTTACGCA
AGACATCAACCGTGCCATTCTGGTGGCGAATGAGTTGGCGGCAGGAACGG
TGCAGATTAATGGCCCCCCGGCCCGTGGACCCGACCACTTCCCGTTTACG
GGTTTCAAGGATTCGGGGATTGGAGCACAGGGGATTAAGTACTCGATCGA
GAGTATGAGCAAGGTGAAGAGCTTTGTTATCAACCTGCCGGAGGCGGCGC
ATCCCCAGGGCCATTAA

Synonyms

Publications