jgi.p|Nanoce1779_2|658574, mRNA_9649 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658574
Unique NamemRNA_9649
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1071
Alignment locationscaffold_31:220643..221713 +

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Properties
Property NameValue
TranscriptId658660
TrackFilteredModels2
ProteinId658574
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:220643..221713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658574gene_9649Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658574mRNA_9649-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9649CDS_9649Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9649 ID=mRNA_9649|Name=jgi.p|Nanoce1779_2|658574|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGTCAGTGACCGACGAGAATGTTTTTCTTCCTGGTCTCTCTTCTCATGA
GGAGGAGGAAGAGGAGATGGAGCTCCATCTCCTCCATCACAACGAAGAAC
AACAGGAGGAGGACGAAAGCGATTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACGACAGCTCCATCACCAGCGACAGTGATGC
CATTGCTATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGGAACAAGTTCAGAGACCTCGACGGCGAAGGACAGTGGAAGCGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAC
GGATGGAAAATGAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAAAGT
AGTCAAGCACATTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGG
TGCAGCGCGAGATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATG
AACCTGTGGAGTTCTGCGGAGGAATGTTTGCGACGCATTTTGATGGATTA
CAAGCCCATTCTGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGA
GGAAACTGAACCAGGTCATGCTTGAGCTGTATACCTTGATCCGTGCGGTG
AACATTGTGCTGAAGGATATGCAGAGCAATTCACCCGCATCGGGGCCCTG
CTTCGTATTGGGCATTGCTGAGCTCCTCGCGAGCGAGCTATGTTTGGAGC
AGCCCCTGCTTGTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACAG
GACGATAGAGGGGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAA
CCTCCCGCACAGCCACACGCTTGTTCCGGCAAATGAGCTCACGGAGATAG
GGCGGGAGAGTCGTAGACAGCTACGTGCGGGCATTGAGAAGCGTTTTATT
CGTGACAGATACCTCTCGACGGATGACTGCGACAGGGCCTCATATGTATT
TGATGCCGCTGCTCTGGCGCACCCTGCAATGTGCAAACTACGACACGTGG
ATAGGATATGTGACACGCCCA
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protein sequence of jgi.p|Nanoce1779_2|658574

>mRNA_9649-protein ID=mRNA_9649-protein|Name=jgi.p|Nanoce1779_2|658574|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MRGARNILMEVRKVVKHISKTTTMKILFDEVQREMYGQALKLVNFAMNLW
SSAEECLRRILMDYKPILRIYHSRSRHTELRKLNQVMLELYTLIRAVNIV
LKDMQSNSPASGPCFVLGIAELLASELCLEQPLLVVNPAIEAGKEEQDDR
GVDVEASGGDTESNLPHSHTLVPANELTEIGRESRRQLRAGIEKRFIRDR
YLSTDDCDRASYVFDAAALAHPAMCKLRHVDRICDTP
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mRNA from alignment at scaffold_31:220643..221713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9649 ID=mRNA_9649|Name=jgi.p|Nanoce1779_2|658574|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at scaffold_31:220643..221713+ (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGTTTTTCTTCCTGGTCTCTCTTCTCATGA
GGAGGAGGAAGAGGAGATGGAGCTCCATCTCCTCCATCACAACGAAGAAC
AACAGGAGGAGGACGAAAGCGATTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACGACAGCTCCATCACCAGCGACAGTGATGC
CATTGCTATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGGAACAAGTTCAGAGACCTCGACGGCGAAGGACAGTGGAAGCGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAC
GGATGGAAAATGAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAAAGT
AGTCAAGCACATTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGG
TGCAGCGCGAGATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATG
AACCTGTGGAGTTCTGCGGAGGAATGTTTGCGACGCATTTTGATGGATTA
CAAGCCCATTCTGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGA
GGAAACTGAACCAGGTCATGCTTGAGCTGTATACCTTGATCCGTGCGGTG
AACATTGTGCTGAAGGATATGCAGAGCAATTCACCCGCATCGGGGCCCTG
CTTCGTATTGGGCATTGCTGAGCTCCTCGCGAGCGAGCTATGTTTGGAGC
AGCCCCTGCTTGTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACAG
GACGATAGAGGGGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAA
CCTCCCGCACAGCCACACGCTTGTTCCGGCAAATGAGCTCACGGAGATAG
GGCGGGAGAGTCGTAGACAGCTACGTGCGGGCATTGAGAAGCGTTTTATT
CGTGACAGATACCTCTCGACGGATGACTGCGACAGGGCCTCATATGTATT
TGATGCCGCTGCTCTGGCGCACCCTGCAATGTGCAAACTACGACACGTGG
ATAGGATATGTGACACGCCCA
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Coding sequence (CDS) from alignment at scaffold_31:220643..221713+

>mRNA_9649 ID=mRNA_9649|Name=jgi.p|Nanoce1779_2|658574|organism=Nannochloropsis oceanica|type=CDS|length=712bp|location=Sequence derived from alignment at scaffold_31:220643..221713+ (Nannochloropsis oceanica)
ATGAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAAAGTAGTCAAGCA
CATTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGGTGCAGCGCG
AGATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATGAACCTGTGG
AGTTCTGCGGAGGAATGTTTGCGACGCATTTTGATGGATTACAAGCCCAT
TCTGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGAGGAAACTGA
ACCAGGTCATGCTTGAGCTGTATACCTTGATCCGTGCGGTGAACATTGTG
CTGAAGGATATGCAGAGCAATTCACCCGCATCGGGGCCCTGCTTCGTATT
GGGCATTGCTGAGCTCCTCGCGAGCGAGCTATGTTTGGAGCAGCCCCTGC
TTGTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACAGGACGATAGA
GGGGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAACCTCCCGCA
CAGCCACACGCTTGTTCCGGCAAATGAGCTCACGGAGATAGGGCGGGAGA
GTCGTAGACAGCTACGTGCGGGCATTGAGAAGCGTTTTATTCGTGACAGA
TACCTCTCGACGGATGACTGCGACAGGGCCTCATATGTATTTGATGCCGC
TGCTCTGGCGCACCCTGCAATGTGCAAACTACGACACGTGGATAGGATAT
GTGACACGCCCA
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Synonyms
Publications