jgi.p|Nanoce1779_2|605478, mRNA_9788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605478
Unique NamemRNA_9788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1052
Alignment locationscaffold_32:57960..59144 -

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Properties
Property NameValue
TranscriptId605564
TrackFilteredModels2
ProteinId605478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:57960..59144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605478gene_9788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605478mRNA_9788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9788CDS_9788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9788 ID=mRNA_9788|Name=jgi.p|Nanoce1779_2|605478|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
TGGCTGGTTGTCAATGCATATAACTGGGGCATTATGTCGGCGATACGGGA
CTATCAGTCTGATATTCTGCGAGCCTTGGCCATGAACTACACACTAGTGC
ATCAAGGAGCATACGATCTGTGTCCTTCAAATCCGCAGCAATTTTTAGAC
TGTTTTTGGGAGGACTTGAATGGCTGCCAATCTGAGTTTCCTACCCTTTC
AAGCATTTCCAGAATAAATCAGCCCCAGGAAATTACCACATCGGCTGTAT
TCCATGAACAATTCCCCCATTGGCTGTGGAATCTATTGGTTGACAAGGGG
ACGATACACCTACAGCATGGGCTGACGGGTGCGACACTGACGGAAGAGGA
CATTGTGGATGAGGATCAGTATCTTCAGCTTAAGCTATCTGTGCTAAGAG
CAATTCTCAGCAAAAGAGTTTTCAAGCCGAGGAGGCATATCCAGCAGAAA
ACTTTGACGATTCTTGAGTCATGGATATCGAATGGGAGCTACGCAAGTAC
TTCTGAAAGCGGCGTAGTGATTCACATCCGTCGCACTGACAAGATGAGTG
ATTTAGGGGCTCATTGGCGCTATATCGACTTTAAGTCTACTGCACATTTC
GGGTGTCTAATTCAGAGGATGGAAAATATGATCAATCATACTTTCCAGCA
TTTCTTCGTCATGTCCGATGATCCCATCATGCAAAAGCGCGGTGCCGAAG
AGCTTGCTTCCTCTTTTCAGGCCAATCCTTCAAATCTTGCCAGTACCGAG
CTTTGCAATCTGTTGGGAGCCAATCGGTCGGAGTACAAGGGCCACCAATC
ACTTGCGGCTGCACACCGTCACCAGCTATATGATATTGTGGTTGCGGAAA
TGTACGCCGCTATCGAAGTTTCTGAGTACATCATTGGGTCTGGCTCCTGT
GCCGTCAGCCAGTTCATGGCACTTAACATCGGGGCCAGACACCGCGTCGA
ACCAGGCCTCGTCGCGCTTTGGGAAGAAGACTTAATCATAAAGGAATGTC
GCTTGCTCCTTCATCAGCGAATAAATTTGCACAAACCATGCAATATTTCA
TC
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protein sequence of jgi.p|Nanoce1779_2|605478

>mRNA_9788-protein ID=mRNA_9788-protein|Name=jgi.p|Nanoce1779_2|605478|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
WLVVNAYNWGIMSAIRDYQSDILRALAMNYTLVHQGAYDLCPSNPQQFLD
CFWEDLNGCQSEFPTLSSISRINQPQEITTSAVFHEQFPHWLWNLLVDKG
TIHLQHGLTGATLTEEDIVDEDQYLQLKLSVLRAILSKRVFKPRRHIQQK
TLTILESWISNGSYASTSESGVVIHIRRTDKMSDLGAHWRYIDFKSTAHF
GCLIQRMENMINHTFQHFFVMSDDPIMQKRGAEELASSFQANPSNLASTE
LCNLLGANRSEYKGHQSLAAAHRHQLYDIVVAEMYAAIEVSEYIIGSGSC
AVSQFMALNIGARHRVEPGLVALWEEDLIIKECRLLLHQRINLHKPCNIS
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mRNA from alignment at scaffold_32:57960..59144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9788 ID=mRNA_9788|Name=jgi.p|Nanoce1779_2|605478|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_32:57960..59144- (Nannochloropsis oceanica)
TGGCTGGTTGTCAATGCATATAACTGGGGCATTATGTCGGCGATACGGGA
CTATCAGTCTGATATTCTGCGAGCCTTGGCCATGAACTACACACTAGTGC
ATCAAGGAGCATACGATCTGTGTCCTTCAAATCCGCAGCAATTTTTAGAC
TGTTTTTGGGAGGACTTGAATGGCTGCCAATCTGAGTTTCCTACCCTTTC
AAGCATTTCCAGAATAAATCAGCCCCAGGAAATTACCACATCGGCTGTAT
TCCATGAACAATTCCCCCATTGGCTGTGGAATCTATTGGTTGACAAGGGG
ACGATACACCTACAGCATGGGCTGACGGGTGCGACACTGACGGAAGAGGA
CATTGTGGATGAGGATCAGTATCTTCAGCTTAAGCTATCTGTGCTAAGAG
CAATTCTCAGCAAAAGAGTTTTCAAGCCGAGGAGGCATATCCAGCAGAAA
ACTTTGACGATTCTTGAGTCATGGATATCGAATGGGAGCTACGCAAGTAC
TTCTGAAAGCGGCGTAGTGATTCACATCCGTCGCACTGACAAGATGAGTG
ATTTAGGGGCTCATTGGCGCTATATCGACTTTAAGTCTACTGCACATTTC
GGGTGTCTAATTCAGAGGATGGAAAATATGATCAATCATACTTTCCAGCA
TTTCTTCGTCATGTCCGATGATCCCATCATGCAAAAGCGCGGTGCCGAAG
AGCTTGCTTCCTCTTTTCAGGCCAATCCTTCAAATCTTGCCAGTACCGAG
CTTTGCAATCTGTTGGGAGCCAATCGGTCGGAGTACAAGGGCCACCAATC
ACTTGCGGCTGCACACCGTCACCAGCTATATGTACGTACAATAGCGTTAG
ACTGATGCTTTGCATGACCACTTTTTAAGACGTCTTAAAATACAGGATAT
TGTGGTTGCGGAAATGTACGCCGCTATCGAAGTTTCTGAGTACATCATTG
GGTCTGGCTCCTGTGCCGTCAGCCAGTTCATGGCACTTAACATCGGGGCC
AGACACCGCGTCGGTAGGTCGGATGAATATTTATTTATCACTTTTCTCTT
GTATGGAAGCCCACTTTTTCTTCATCCTGCAGAACCAGGCCTCGTCGCGC
TTTGGGAAGAAGACTTAATCATAAAGGAATGTCGCTTGCTCCTTCATCAG
CGAATAAATTTGCACAAACCATGCAATATTTCATC
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Coding sequence (CDS) from alignment at scaffold_32:57960..59144-

>mRNA_9788 ID=mRNA_9788|Name=jgi.p|Nanoce1779_2|605478|organism=Nannochloropsis oceanica|type=CDS|length=3156bp|location=Sequence derived from alignment at scaffold_32:57960..59144- (Nannochloropsis oceanica)
AACCAGGCCTCGTCGCGCTTTGGGAAGAAGACTTAATCATAAAGGAATGT
CGCTTGCTCCTTCATCAGCGAATAAATTTGCACAAACCATGCAATATTTC
ATCGATATTGTGGTTGCGGAAATGTACGCCGCTATCGAAGTTTCTGAGTA
CATCATTGGGTCTGGCTCCTGTGCCGTCAGCCAGTTCATGGCACTTAACA
TCGGGGCCAGACACCGCGTCGTGGCTGGTTGTCAATGCATATAACTGGGG
CATTATGTCGGCGATACGGGACTATCAGTCTGATATTCTGCGAGCCTTGG
CCATGAACTACACACTAGTGCATCAAGGAGCATACGATCTGTGTCCTTCA
AATCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGGCTGCCA
ATCTGAGTTTCCTACCCTTTCAAGCATTTCCAGAATAAATCAGCCCCAGG
AAATTACCACATCGGCTGTATTCCATGAACAATTCCCCCATTGGCTGTGG
AATCTATTGGTTGACAAGGGGACGATACACCTACAGCATGGGCTGACGGG
TGCGACACTGACGGAAGAGGACATTGTGGATGAGGATCAGTATCTTCAGC
TTAAGCTATCTGTGCTAAGAGCAATTCTCAGCAAAAGAGTTTTCAAGCCG
AGGAGGCATATCCAGCAGAAAACTTTGACGATTCTTGAGTCATGGATATC
GAATGGGAGCTACGCAAGTACTTCTGAAAGCGGCGTAGTGATTCACATCC
GTCGCACTGACAAGATGAGTGATTTAGGGGCTCATTGGCGCTATATCGAC
TTTAAGTCTACTGCACATTTCGGGTGTCTAATTCAGAGGATGGAAAATAT
GATCAATCATACTTTCCAGCATTTCTTCGTCATGTCCGATGATCCCATCA
TGCAAAAGCGCGGTGCCGAAGAGCTTGCTTCCTCTTTTCAGGCCAATCCT
TCAAATCTTGCCAGTACCGAGCTTTGCAATCTGTTGGGAGCCAATCGGTC
GGAGTACAAGGGCCACCAATCACTTGCGGCTGCACACCGTCACCAGCTAT
ATAACCAGGCCTCGTCGCGCTTTGGGAAGAAGACTTAATCATAAAGGAAT
GTCGCTTGCTCCTTCATCAGCGAATAAATTTGCACAAACCATGCAATATT
TCATCGATATTGTGGTTGCGGAAATGTACGCCGCTATCGAAGTTTCTGAG
TACATCATTGGGTCTGGCTCCTGTGCCGTCAGCCAGTTCATGGCACTTAA
CATCGGGGCCAGACACCGCGTCGTGGCTGGTTGTCAATGCATATAACTGG
GGCATTATGTCGGCGATACGGGACTATCAGTCTGATATTCTGCGAGCCTT
GGCCATGAACTACACACTAGTGCATCAAGGAGCATACGATCTGTGTCCTT
CAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGGCTGC
CAATCTGAGTTTCCTACCCTTTCAAGCATTTCCAGAATAAATCAGCCCCA
GGAAATTACCACATCGGCTGTATTCCATGAACAATTCCCCCATTGGCTGT
GGAATCTATTGGTTGACAAGGGGACGATACACCTACAGCATGGGCTGACG
GGTGCGACACTGACGGAAGAGGACATTGTGGATGAGGATCAGTATCTTCA
GCTTAAGCTATCTGTGCTAAGAGCAATTCTCAGCAAAAGAGTTTTCAAGC
CGAGGAGGCATATCCAGCAGAAAACTTTGACGATTCTTGAGTCATGGATA
TCGAATGGGAGCTACGCAAGTACTTCTGAAAGCGGCGTAGTGATTCACAT
CCGTCGCACTGACAAGATGAGTGATTTAGGGGCTCATTGGCGCTATATCG
ACTTTAAGTCTACTGCACATTTCGGGTGTCTAATTCAGAGGATGGAAAAT
ATGATCAATCATACTTTCCAGCATTTCTTCGTCATGTCCGATGATCCCAT
CATGCAAAAGCGCGGTGCCGAAGAGCTTGCTTCCTCTTTTCAGGCCAATC
CTTCAAATCTTGCCAGTACCGAGCTTTGCAATCTGTTGGGAGCCAATCGG
TCGGAGTACAAGGGCCACCAATCACTTGCGGCTGCACACCGTCACCAGCT
ATATAACCAGGCCTCGTCGCGCTTTGGGAAGAAGACTTAATCATAAAGGA
ATGTCGCTTGCTCCTTCATCAGCGAATAAATTTGCACAAACCATGCAATA
TTTCATCGATATTGTGGTTGCGGAAATGTACGCCGCTATCGAAGTTTCTG
AGTACATCATTGGGTCTGGCTCCTGTGCCGTCAGCCAGTTCATGGCACTT
AACATCGGGGCCAGACACCGCGTCGTGGCTGGTTGTCAATGCATATAACT
GGGGCATTATGTCGGCGATACGGGACTATCAGTCTGATATTCTGCGAGCC
TTGGCCATGAACTACACACTAGTGCATCAAGGAGCATACGATCTGTGTCC
TTCAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGGCT
GCCAATCTGAGTTTCCTACCCTTTCAAGCATTTCCAGAATAAATCAGCCC
CAGGAAATTACCACATCGGCTGTATTCCATGAACAATTCCCCCATTGGCT
GTGGAATCTATTGGTTGACAAGGGGACGATACACCTACAGCATGGGCTGA
CGGGTGCGACACTGACGGAAGAGGACATTGTGGATGAGGATCAGTATCTT
CAGCTTAAGCTATCTGTGCTAAGAGCAATTCTCAGCAAAAGAGTTTTCAA
GCCGAGGAGGCATATCCAGCAGAAAACTTTGACGATTCTTGAGTCATGGA
TATCGAATGGGAGCTACGCAAGTACTTCTGAAAGCGGCGTAGTGATTCAC
ATCCGTCGCACTGACAAGATGAGTGATTTAGGGGCTCATTGGCGCTATAT
CGACTTTAAGTCTACTGCACATTTCGGGTGTCTAATTCAGAGGATGGAAA
ATATGATCAATCATACTTTCCAGCATTTCTTCGTCATGTCCGATGATCCC
ATCATGCAAAAGCGCGGTGCCGAAGAGCTTGCTTCCTCTTTTCAGGCCAA
TCCTTCAAATCTTGCCAGTACCGAGCTTTGCAATCTGTTGGGAGCCAATC
GGTCGGAGTACAAGGGCCACCAATCACTTGCGGCTGCACACCGTCACCAG
CTATAT
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Synonyms
Publications