jgi.p|Nanoce1779_2|606900, mRNA_9210 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606900
Unique NamemRNA_9210
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1867
Alignment locationscaffold_36:228234..230100 +

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Properties
Property NameValue
TranscriptId606986
TrackFilteredModels2
ProteinId606900
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:228234..230100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606900gene_9210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606900mRNA_9210-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9210CDS_9210Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Nanoce1779_2|606900|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp
TCTTCTTGACCCCCTTGCCTCCCCCAGCCTTCTTGGCGGCGGCCTTGGCA
TTTTTGGCGTTGGCCATGATCTGATGATGATGATGTGTGATGAAAAGGCC
ATCGATTGCAGGGTTAGAAAGGTAGAGGGGATGTAGAGAGTGGAGAGGCA
GCATTAACAAAAAGGCAGGTACGCGTGTGTGGTAAAGGTGAAGGGGGCAA
AAGAAGCTAAAGAAGTTCAGTGGATGGCCACAGGATACTTTACGCGTTTT
CATCGGCCACAAAAACTATTGCGTCCCTCGAGTTGAGACATGGATGTGCA
TAAGTATCCGTGCTAGCAATGCTGCATGTCATGGTCATCGCATGACAGGT
GGGGTGCATACCACAATGGGTCAAGTGGTGCCTCCCACTTTTGCTTCCCC
TCACTGTTCGCGCAAGGGAGTTGAACGTCGTCGATGGTCCTTCCGTATGG
GCCTCGTTTGCGTCAATTATTTACTGTCCTTACCACGGCAAATCTATATG
GCCTTTTCCCTTTGTGTCTCTGGACGACAAAGTGTTCCTCACATCTGCAA
CTTTGTCCTTGGTTTACCTCTTACGTGCTCGTAATTTCGCACGCGACGCC
AGTTTCGACACCCCCGCACCTCATGTCACGACACTTGTACAAAACCACAA
CAACAGACGACAAACAAACAAGAAACGACATGGGAAATTTCTTGCATACT
TTTCAAGCCAGCGTTCAGGGCCTCTCCTTCTCCCAAACTGGAGGCGCCCT
TTTCTATGCCATCGCCCTCCTCATCGCGGGGTTCTGGACCCTTCAGCAAG
TCTGGTTCTCTTTCCCCACCACCGTCCCGGACGTGGCCGCCATCCCCTGG
GAGCTTTTCTGCATTGCCGATGAAGTGGTTGGACGTAAATGTTTGGTGGC
CGTAGGTGGGCTCGTAAGCCAAGGCCGGTACTTGGTGGCCTTGGGAGGGA
CAGCCACAGGTGTCGTTAGCATCGGTCAAATCGCCATTGGAGTGATCAGC
CTCGGATGGCTCGCCTGTGGTATATTGCTCTCCGTCGGCATCACTGCGGT
GGCGTGTCCAGGCCTTGTGGTGGCATTGGTCTCGGTTGGTGGACATTGTC
CGACTTGTATGGTGGGATTGACTTTGTTCAAGACGCTGAGAAGCAAAGGC
GTGTTAAACTTCGCGCCTTTGCATCTGTCCGCCAACCTTTTCACTTCTCC
TTATGGCATTGGTCGTATGGGTGGCCGAGGAGGTAGAAAATTAAAGGAGT
CACCTCGTGTGGAGGTGGAAGACGGTGAGGTGGAGGTAAGGGCATGGAGA
CGTCACCAACAGGAGGAGGAGCAGCAGCAGCAGCAGCAAGTAGTAGGAGG
GGAGGAATGGCCACACACTCATCGTCATAGCAGGTACGCACAAGGCGCTT
AACTTTCAATAGTACTGTCGCTGCGCTAGCTGAAATGTAAAGGTCTAAGA
AAAAAGAGGCTGCGCATGTTGTACGCTGAGCTGGCTATTTAGAATGGTGT
GAAAAATAAATGGACAGTATAAATTTTGTAACCGGGTCAACATATGAGGA
AAATAAAGATCACTTGAAAACAAGATGTCCAAGGCATGTCTAGAATTTTG
TACCAAAAGTAGGGATTAAGGAGAAACTAACAAAAGAAGGAGAGAAGGTC
CTTGCCTGCGTGCGTGTGTGAAGATGAAGCCAATGAATGAATTGTACGAC
AGGAATGGTACCAGCTGACACATTTCGCCTCAAAATTGTGTGGTCATTCC
TTCTTCTTTTAAAACATGATCTTCTGCACTCATTTCCCCTGAGCACCTCT
TATATACATCCTTTAATCACTCGTCACCGTCACCTTGCTCTCTTCCACTC
CTCCTCCTCCTCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|606900

>mRNA_9210-protein ID=mRNA_9210-protein|Name=jgi.p|Nanoce1779_2|606900|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MVLPYGPRLRQLFTVLTTANLYGLFPLCLWTTKCSSHLQLCPWFTSYVLV
ISHATPVSTPPHLMSRHLYKTTTTDDKQTRNDMGNFLHTFQASVQGLSFS
QTGGALFYAIALLIAGFWTLQQVWFSFPTTVPDVAAIPWELFCIADEVVG
RKCLVAVGGLVSQGRYLVALGGTATGVVSIGQIAIGVISLGWLACGILLS
VGITAVACPGLVVALVSVGGHCPTCMVGLTLFKTLRSKGVLNFAPLHLSA
NLFTSPYGIGRMGGRGGRKLKESPRVEVEDGEVEVRAWRRHQQEEEQQQQ
QQVVGGEEWPHTHRHSRYAQGA*
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mRNA from alignment at scaffold_36:228234..230100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Nanoce1779_2|606900|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_36:228234..230100+ (Nannochloropsis oceanica)
TCTTCTTGACCCCCTTGCCTCCCCCAGCCTTCTTGGCGGCGGCCTTGGCA
TTTTTGGCGTTGGCCATGATCTGATGATGATGATGTGTGATGAAAAGGCC
ATCGATTGCAGGGTTAGAAAGGTAGAGGGGATGTAGAGAGTGGAGAGGCA
GCATTAACAAAAAGGCAGGTACGCGTGTGTGGTAAAGGTGAAGGGGGCAA
AAGAAGCTAAAGAAGTTCAGTGGATGGCCACAGGATACTTTACGCGTTTT
CATCGGCCACAAAAACTATTGCGTCCCTCGAGTTGAGACATGGATGTGCA
TAAGTATCCGTGCTAGCAATGCTGCATGTCATGGTCATCGCATGACAGGT
GGGGTGCATACCACAATGGGTCAAGTGGTGCCTCCCACTTTTGCTTCCCC
TCACTGTTCGCGCAAGGGAGTTGAACGTCGTCGATGGTCCTTCCGTATGG
GCCTCGTTTGCGTCAATTATTTACTGTCCTTACCACGGCAAATCTATATG
GCCTTTTCCCTTTGTGTCTCTGGACGACAAAGTGTTCCTCACATCTGCAA
CTTTGTCCTTGGTTTACCTCTTACGTGCTCGTAATTTCGCACGCGACGCC
AGTTTCGACACCCCCGCACCTCATGTCACGACACTTGTACAAAACCACAA
CAACAGACGACAAACAAACAAGAAACGACATGGGAAATTTCTTGCATACT
TTTCAAGCCAGCGTTCAGGGCCTCTCCTTCTCCCAAACTGGAGGCGCCCT
TTTCTATGCCATCGCCCTCCTCATCGCGGGGTTCTGGACCCTTCAGCAAG
TCTGGTTCTCTTTCCCCACCACCGTCCCGGACGTGGCCGCCATCCCCTGG
GAGCTTTTCTGCATTGCCGATGAAGTGGTTGGACGTAAATGTTTGGTGGC
CGTAGGTGGGCTCGTAAGCCAAGGCCGGTACTTGGTGGCCTTGGGAGGGA
CAGCCACAGGTGTCGTTAGCATCGGTCAAATCGCCATTGGAGTGATCAGC
CTCGGATGGCTCGCCTGTGGTATATTGCTCTCCGTCGGCATCACTGCGGT
GGCGTGTCCAGGCCTTGTGGTGGCATTGGTCTCGGTTGGTGGACATTGTC
CGACTTGTATGGTGGGATTGACTTTGTTCAAGACGCTGAGAAGCAAAGGC
GTGTTAAACTTCGCGCCTTTGCATCTGTCCGCCAACCTTTTCACTTCTCC
TTATGGCATTGGTCGTATGGGTGGCCGAGGAGGTAGAAAATTAAAGGAGT
CACCTCGTGTGGAGGTGGAAGACGGTGAGGTGGAGGTAAGGGCATGGAGA
CGTCACCAACAGGAGGAGGAGCAGCAGCAGCAGCAGCAAGTAGTAGGAGG
GGAGGAATGGCCACACACTCATCGTCATAGCAGGTACGCACAAGGCGCTT
AACTTTCAATAGTACTGTCGCTGCGCTAGCTGAAATGTAAAGGTCTAAGA
AAAAAGAGGCTGCGCATGTTGTACGCTGAGCTGGCTATTTAGAATGGTGT
GAAAAATAAATGGACAGTATAAATTTTGTAACCGGGTCAACATATGAGGA
AAATAAAGATCACTTGAAAACAAGATGTCCAAGGCATGTCTAGAATTTTG
TACCAAAAGTAGGGATTAAGGAGAAACTAACAAAAGAAGGAGAGAAGGTC
CTTGCCTGCGTGCGTGTGTGAAGATGAAGCCAATGAATGAATTGTACGAC
AGGAATGGTACCAGCTGACACATTTCGCCTCAAAATTGTGTGGTCATTCC
TTCTTCTTTTAAAACATGATCTTCTGCACTCATTTCCCCTGAGCACCTCT
TATATACATCCTTTAATCACTCGTCACCGTCACCTTGCTCTCTTCCACTC
CTCCTCCTCCTCCTCCT
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Coding sequence (CDS) from alignment at scaffold_36:228234..230100+

>mRNA_9210 ID=mRNA_9210|Name=jgi.p|Nanoce1779_2|606900|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_36:228234..230100+ (Nannochloropsis oceanica)
ATGGTCCTTCCGTATGGGCCTCGTTTGCGTCAATTATTTACTGTCCTTAC
CACGGCAAATCTATATGGCCTTTTCCCTTTGTGTCTCTGGACGACAAAGT
GTTCCTCACATCTGCAACTTTGTCCTTGGTTTACCTCTTACGTGCTCGTA
ATTTCGCACGCGACGCCAGTTTCGACACCCCCGCACCTCATGTCACGACA
CTTGTACAAAACCACAACAACAGACGACAAACAAACAAGAAACGACATGG
GAAATTTCTTGCATACTTTTCAAGCCAGCGTTCAGGGCCTCTCCTTCTCC
CAAACTGGAGGCGCCCTTTTCTATGCCATCGCCCTCCTCATCGCGGGGTT
CTGGACCCTTCAGCAAGTCTGGTTCTCTTTCCCCACCACCGTCCCGGACG
TGGCCGCCATCCCCTGGGAGCTTTTCTGCATTGCCGATGAAGTGGTTGGA
CGTAAATGTTTGGTGGCCGTAGGTGGGCTCGTAAGCCAAGGCCGGTACTT
GGTGGCCTTGGGAGGGACAGCCACAGGTGTCGTTAGCATCGGTCAAATCG
CCATTGGAGTGATCAGCCTCGGATGGCTCGCCTGTGGTATATTGCTCTCC
GTCGGCATCACTGCGGTGGCGTGTCCAGGCCTTGTGGTGGCATTGGTCTC
GGTTGGTGGACATTGTCCGACTTGTATGGTGGGATTGACTTTGTTCAAGA
CGCTGAGAAGCAAAGGCGTGTTAAACTTCGCGCCTTTGCATCTGTCCGCC
AACCTTTTCACTTCTCCTTATGGCATTGGTCGTATGGGTGGCCGAGGAGG
TAGAAAATTAAAGGAGTCACCTCGTGTGGAGGTGGAAGACGGTGAGGTGG
AGGTAAGGGCATGGAGACGTCACCAACAGGAGGAGGAGCAGCAGCAGCAG
CAGCAAGTAGTAGGAGGGGAGGAATGGCCACACACTCATCGTCATAGCAG
GTACGCACAAGGCGCTTAA
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Synonyms
Publications