jgi.p|Nanoce1779_2|607238, mRNA_9662 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607238
Unique NamemRNA_9662
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length750
Alignment locationscaffold_38:13313..14223 -

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Properties
Property NameValue
TranscriptId607324
TrackFilteredModels2
ProteinId607238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:13313..14223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607238gene_9662Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607238mRNA_9662-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9662CDS_9662Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9662 ID=mRNA_9662|Name=jgi.p|Nanoce1779_2|607238|organism=Nannochloropsis oceanica|type=mRNA|length=750bp
CATGGGCCGGATGAACTACGACGATATTCATTCGTCTATCTCAGACGACA
GGCGTCAAGGCACCATCAACGGCGCAGAGCTTGGCTGTGTGCTATCACAT
CTTACAGCGATAAGGCGCGCGTACCTCGAAGGGAACGAGATTGCCATGAT
TGTAGAAGATGATATCACCCCGTTACTCATGCCATTTTGGACGAACTCAC
TCGTCGACGTTATCAACGAGGCAGGAAACTATTCAGCTGGAACGTGGGAC
ATGGTTCAGATGGCTTGGATTTGGGGGATGGATGAGACCTTATATGATCG
AGGAGCGCATAAATTTGGTCCAGGCCGTCACGTCTTCCAAACACGGTTTC
AATTCGGCACATCAGCGTATGTCATTTCCAAAAGAGGAATGGTAAAGATC
CTTGATACCTATTTCACTAACAGAACAGACAACGGACAGATTCGTCTCCG
AAAAGGAGGCGACCAAGCAGAGCTCTACATTTATGGTGCTATCTCGAATT
TATATGTTGCTGTGCCCTCATTTTTCACTATCGAGGGATCCGATACCACC
ATCTCCATAGGAGAAGAAGGCCAGCAGCGCCTGTCCAGCCATCGGGAGTC
GAATAGCATTCACATCAAGACCACATTTGACCTTTTTCATGAGATGAAAA
GGGAAATGCTCGCCTCCAAGGGAATTTCAGAGTGAGCAAAGGACTACTTG
GGCTCTGTGAAACGGTCCAACTGCCATAAGTCATTCTGCCATCGTCAGAA
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protein sequence of jgi.p|Nanoce1779_2|607238

>mRNA_9662-protein ID=mRNA_9662-protein|Name=jgi.p|Nanoce1779_2|607238|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MGRMNYDDIHSSISDDRRQGTINGAELGCVLSHLTAIRRAYLEGNEIAMI
VEDDITPLLMPFWTNSLVDVINEAGNYSAGTWDMVQMAWIWGMDETLYDR
GAHKFGPGRHVFQTRFQFGTSAYVISKRGMVKILDTYFTNRTDNGQIRLR
KGGDQAELYIYGAISNLYVAVPSFFTIEGSDTTISIGEEGQQRLSSHRES
NSIHIKTTFDLFHEMKREMLASKGISE*
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mRNA from alignment at scaffold_38:13313..14223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9662 ID=mRNA_9662|Name=jgi.p|Nanoce1779_2|607238|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_38:13313..14223- (Nannochloropsis oceanica)
CATGGGCCGGATGAACTACGACGATATTCATTCGTCTATCTCAGACGACA
GGCGTCAAGGCACCATCAACGGCGCAGAGCTTGGCTGTGTGCTATCACAT
CTTACAGCGATAAGGCGCGCGTACCTCGAAGGGAACGAGATTGCCATGAT
TGTAGAAGATGATATCACCCCGTTACTCATGTTAGTACGCGTGGGATGGC
TGATTTGCATTTTTTCTTGTTCTTACATGCACATTTCATTCACACCACCT
GTAGGCCATTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGA
AACTATTCAGCTGGAACGTGGGACATGGTTCAGATGGCTTGGATTTGGGG
GATGGATGAGACCTTATATGATCGAGGAGCGCATAAATTTGGTCCAGGCC
GTCACGTCTTCCAAACACGGTTTCAATTCGGCACATCAGCGTATGTCATT
TCCAAAAGAGGAATGGTAAAGATCCTTGATACCTATTTCACTAACAGAAC
AGACAACGGACAGATTCGTCTCCGAAAAGGAGGCGACCAAGCAGAGCTCT
ACATTTATGGTGCTATCTCGAATTTATATGTTGCTGTGCCCTCATTTTTC
ACTATCGAGGGATCCGATACCACCATCTCCATAGGAGAAGAAGGCCAGCA
GCGCCTGTCCAGCCATCGGGAGTCGAATAGCATTCACATCAAGACCACAT
TTGACCTTTTTCATGAGATGAAAAGGGAAATGCTCGCCTCCAAGGGAATT
TCAGAGTGAGCAAAGGACTACTTGGGCTCTGTGAAACGGTCCAACTGCCA
TTAAAAAAACAAAAAGAAGAAACAAGTTTTATGCGCGTTATTCTCACGAT
CGTGATACTCGTTTATTGTTTGCTTGTTTGAGACCTAAAAGTCATTCTGC
CATCGTCAGAA
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Coding sequence (CDS) from alignment at scaffold_38:13313..14223-

>mRNA_9662 ID=mRNA_9662|Name=jgi.p|Nanoce1779_2|607238|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_38:13313..14223- (Nannochloropsis oceanica)
GCCATTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGAAACT
ATTCAGCTGGAACGTGGGACATGGTTCAGATGGCTTGGATTTGGGGGATG
GATGAGACCTTATATGATCGAGGAGCGCATAAATTTGGTCCAGGCCGTCA
CGTCTTCCAAACACGGTTTCAATTCGGCACATCAGCGTATGTCATTTCCA
AAAGAGGAATGGTAAAGATCCTTGATACCTATTTCACTAACAGAACAGAC
AACGGACAGATTCGTCTCCGAAAAGGAGGCGACCAAGCAGAGCTCTACAT
TTATGGTGCTATCTCGAATTTATATGTTGCTGTGCCCTCATTTTTCACTA
TCGAGGGATCCGATACCACCATCTCCATAGGAGAAGAAGGCCAGCAGCGC
CTGTCCAGCCATCGGGAGTCGAATAGCATTCACATCAAGACCACATTTGA
CCTTTTTCATGAGATGAAAAGGGAAATGCTCGCCTCCAAGGGAATTTCAG
AGTGAATGGGCCGGATGAACTACGACGATATTCATTCGTCTATCTCAGAC
GACAGGCGTCAAGGCACCATCAACGGCGCAGAGCTTGGCTGTGTGCTATC
ACATCTTACAGCGATAAGGCGCGCGTACCTCGAAGGGAACGAGATTGCCA
TGATTGTAGAAGATGATATCACCCCGTTACTCATGCCATTTTGGACGAAC
TCACTCGTCGACGTTATCAACGAGGCAGGAAACTATTCAGCTGGAACGTG
GGACATGGTTCAGATGGCTTGGATTTGGGGGATGGATGAGACCTTATATG
ATCGAGGAGCGCATAAATTTGGTCCAGGCCGTCACGTCTTCCAAACACGG
TTTCAATTCGGCACATCAGCGTATGTCATTTCCAAAAGAGGAATGGTAAA
GATCCTTGATACCTATTTCACTAACAGAACAGACAACGGACAGATTCGTC
TCCGAAAAGGAGGCGACCAAGCAGAGCTCTACATTTATGGTGCTATCTCG
AATTTATATGTTGCTGTGCCCTCATTTTTCACTATCGAGGGATCCGATAC
CACCATCTCCATAGGAGAAGAAGGCCAGCAGCGCCTGTCCAGCCATCGGG
AGTCGAATAGCATTCACATCAAGACCACATTTGACCTTTTTCATGAGATG
AAAAGGGAAATGCTCGCCTCCAAGGGAATTTCAGAGTGAATGGGCCGGAT
GAACTACGACGATATTCATTCGTCTATCTCAGACGACAGGCGTCAAGGCA
CCATCAACGGCGCAGAGCTTGGCTGTGTGCTATCACATCTTACAGCGATA
AGGCGCGCGTACCTCGAAGGGAACGAGATTGCCATGATTGTAGAAGATGA
TATCACCCCGTTACTCAT
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Synonyms
Publications