jgi.p|Nanoce1779_2|551643, mRNA_1996 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551643
Unique NamemRNA_1996
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1384
Alignment locationscaffold_4:527017..528580 -

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Properties
Property NameValue
TranscriptId551729
TrackFilteredModels2
ProteinId551643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:527017..528580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551643gene_1996Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551643mRNA_1996-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1996CDS_1996Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1996 ID=mRNA_1996|Name=jgi.p|Nanoce1779_2|551643|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
ATGGACTTTGCCTTGGCACAGGCCCAGGAGCTGGCGCAGCAAGCCACGCC
CGCTAAAGGTGCCACCCTCTCCCCTTCGTCGTCGACAGTCACCAAGCGGC
GGCCCCGTCCGTTCCAAGCGGGGGACATGGTCATTATCATGGAGCGGCAC
GATAACTACTCCCACATTTACTTGGAGCCGGGCGGCATGTTCCAAAACCG
TCTAGGCCACTTCCACCATGACGACATGATCGGTAGATCCGTTGGCGCCA
AGGTTGTATCGCGCTCGGCCAGTGGCAAGTACATCCGTCTCTTGCTACCC
TCTCCAGAGCTGTGGACCCTAAGTATCAAGCAACGCACGCAAATCGTGCA
AGACTTGGATCAAAGCATGGTGGTCTTCATGCTGGGCTTGCGACCAGGCA
TGCATGTGCTGGAGTCGGGAACAGGGTCAGGGGCCATGTCACATGCGATT
TTGCGGACGATCAGCCCCAACGGGCATTTGCACACATTTGAGTTTAATGA
GGCAAGGGCACGGGAGGCAAGAGTAGATTTTGAGCATAACAAGGTCGGGC
ATCTCGTAACGGTGCGGCATGCGGATATTTGCCAGGAACTGGGGTCGACG
CTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGTGGTT
AGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTCGCCA
CCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTTGAGA
GAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGCAATT
TGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAGGAAC
TGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAATAGA
AAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGCTGAG
GGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTTGCAA
AGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGCAATT
GCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTCCTTC
ATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCGACAT
CTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGAAGCC
TAACAATTGACTTCGAAGGAGAGAAACAAACACAAAATTATATAGTTGCT
CCATCGCATTGACGGAATAACTCCGTCACTGACGTGTTTCAGGCGCAATT
GTTTGAAACCTTGGGGTGTAGCGGGGCAGGACACGGCGTGCATCTTAGGC
AGAAAATCGTCAAAGACGATGATTTCGGTGGGTG
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protein sequence of jgi.p|Nanoce1779_2|551643

>mRNA_1996-protein ID=mRNA_1996-protein|Name=jgi.p|Nanoce1779_2|551643|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MDFALAQAQELAQQATPAKGATLSPSSSTVTKRRPRPFQAGDMVIIMERH
DNYSHIYLEPGGMFQNRLGHFHHDDMIGRSVGAKVVSRSASGKYIRLLLP
SPELWTLSIKQRTQIVQDLDQSMVVFMLGLRPGMHVLESGTGSGAMSHAI
LRTISPNGHLHTFEFNEARAREARVDFEHNKVGHLVTVRHADICQELGST
LRGQMDAVFLDVPQPWLAIPLAAAVLKPNAGLATYSPCLEQVFKTCEALR
EHNFHSIRTMEVRHKQFDLWRTVMPKMDFGDEELRNDEAEEKETEKEENR
KEIEGEVQTKEGKRKLREGAGEGGEEEEERLFAKARSVMRGHTAFLTYAI
ACLHPPDRRSAPPAPPSSFHPEKTPATATVCSTSAGLKKDEIVNELAAEA
*
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mRNA from alignment at scaffold_4:527017..528580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1996 ID=mRNA_1996|Name=jgi.p|Nanoce1779_2|551643|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at scaffold_4:527017..528580- (Nannochloropsis oceanica)
ATGGACTTTGCCTTGGCACAGGCCCAGGAGCTGGCGCAGCAAGCCACGCC
CGCTAAAGGTGCCACCCTCTCCCCTTCGTCGTCGACAGTCACCAAGCGGC
GGCCCCGTCCGTTCCAAGCGGGGGACATGGTCATTATCATGGAGCGGCAC
GATAACTACTCCCACATTTACTTGGAGCCGGGCGGCATGTTCCAAAACCG
TCTAGGCCACTTCCACCATGACGACATGATCGGTAGATCCGTTGGCGCCA
AGGTTGTATCGCGCTCGGCCAGTGGCAAGTACATCCGTCTCTTGCTACCC
TCTCCAGAGCTGTGGACCCTAAGTATCAAGCAACGCACGCAAATCGTGCA
AGACTTGGATCAAAGCATGGTGGTCTTCATGCTGGGCTTGCGACCAGGCA
TGCATGTGCTGGAGTCGGGAACAGGGTCAGGGGCCATGTCACATGCGATT
TTGCGGACGATCAGCCCCAACGGGCATTTGCACACATTTGAGTTTAATGA
GGCAAGGGCACGGGAGGCAAGAGTAGATTTTGAGCATAACAAGGTCGGGC
ATCTCGTAACGGTGCGGCATGCGGATATTTGCCAGGAACTGGGGTCGTTG
GATATGGACGGAGAGGAGGGTGAGGTGCTTGCTGCAGTTCCTCTTCCTGT
GAATGTCATGAATGGTGCTACAGCAACTGCTTGTACAGATATGAATAACG
GGGCCTCGACCGAAATCGAAGACACTATGATCCATTCCTCATCACCTCTT
CCTGTAAGTATCACCCCAACCATCAGGACGCTTCGCGGACAAATGGACGC
TGTCTTCCTCGACGTCCCACAGCCGTGGTTAGCGATCCCTCTGGCTGCAG
CAGTGCTGAAGCCTAATGCAGGCCTCGCCACCTACTCCCCTTGCTTGGAA
CAAGTTTTCAAAACGTGCGAGGCGTTGAGAGAGCACAATTTTCACTCAAT
CAGAACGATGGAGGTGAGACATAAGCAATTTGATCTCTGGAGGACAGTAA
TGCCCAAAATGGATTTTGGGGACGAGGAACTGAGGAATGATGAGGCAGAG
GAGAAAGAGACGGAGAAGGAGGAAAATAGAAAAGAGATAGAAGGAGAAGT
CCAGACAAAAGAGGGCAAGAGAAAGCTGAGGGAGGGAGCGGGGGAGGGTG
GGGAGGAGGAGGAAGAACGGTTGTTTGCAAAGGCGAGGTCGGTGATGCGG
GGGCATACGGCATTTTTGACTTACGCAATTGCTTGTCTGCACCCGCCGGA
TCGGCGAAGCGCACCTCCTGCTCCTCCTTCATCTTTTCATCCTGAGAAGA
CTCCTGCGACCGCTACGGTCTGCTCGACATCTGCAGGATTGAAGAAAGAC
GAGATTGTGAACGAACTCGCAGCCGAAGCCTAACAATTGACTTCGAAGGA
GAGAAACAAACACAAAATTATATAGTTGCTCCATCGCATTGACGGAATAA
CTCCGTCACTGACGTGTTTCAGGCGCAATTGTTTGAAACCTTGGGGTGTA
GCGGGGCAGGACACGGCGTGCATCTTAGGCAGAAAATCGTCAAAGACGAT
GATTTCGGTGGGTG
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Coding sequence (CDS) from alignment at scaffold_4:527017..528580-

>mRNA_1996 ID=mRNA_1996|Name=jgi.p|Nanoce1779_2|551643|organism=Nannochloropsis oceanica|type=CDS|length=2406bp|location=Sequence derived from alignment at scaffold_4:527017..528580- (Nannochloropsis oceanica)
GACGCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGCCGT
GGTTAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGCCTC
GCCACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGCGTT
GAGAGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATAAGC
AATTTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGACGAG
GAACTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGAAAA
TAGAAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAAAGC
TGAGGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTGTTT
GCAAAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTACGC
AATTGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTCCTC
CTTCATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGCTCG
ACATCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGCCGA
AGCCTAAATGGACTTTGCCTTGGCACAGGCCCAGGAGCTGGCGCAGCAAG
CCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGTCGTCGACAGTCACC
AAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATGGTCATTATCATGGA
GCGGCACGATAACTACTCCCACATTTACTTGGAGCCGGGCGGCATGTTCC
AAAACCGTCTAGGCCACTTCCACCATGACGACATGATCGGTAGATCCGTT
GGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAGTACATCCGTCTCTT
GCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAAGCAACGCACGCAAA
TCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCATGCTGGGCTTGCGA
CCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCAGGGGCCATGTCACA
TGCGATTTTGCGGACGATCAGCCCCAACGGGCATTTGCACACATTTGAGT
TTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATTTTGAGCATAACAAG
GTCGGGCATCTCGTAACGGTGCGGCATGCGGATATTTGCCAGGAACTGGG
GTCGACGCTTCGCGGACAAATGGACGCTGTCTTCCTCGACGTCCCACAGC
CGTGGTTAGCGATCCCTCTGGCTGCAGCAGTGCTGAAGCCTAATGCAGGC
CTCGCCACCTACTCCCCTTGCTTGGAACAAGTTTTCAAAACGTGCGAGGC
GTTGAGAGAGCACAATTTTCACTCAATCAGAACGATGGAGGTGAGACATA
AGCAATTTGATCTCTGGAGGACAGTAATGCCCAAAATGGATTTTGGGGAC
GAGGAACTGAGGAATGATGAGGCAGAGGAGAAAGAGACGGAGAAGGAGGA
AAATAGAAAAGAGATAGAAGGAGAAGTCCAGACAAAAGAGGGCAAGAGAA
AGCTGAGGGAGGGAGCGGGGGAGGGTGGGGAGGAGGAGGAAGAACGGTTG
TTTGCAAAGGCGAGGTCGGTGATGCGGGGGCATACGGCATTTTTGACTTA
CGCAATTGCTTGTCTGCACCCGCCGGATCGGCGAAGCGCACCTCCTGCTC
CTCCTTCATCTTTTCATCCTGAGAAGACTCCTGCGACCGCTACGGTCTGC
TCGACATCTGCAGGATTGAAGAAAGACGAGATTGTGAACGAACTCGCAGC
CGAAGCCTAAATGGACTTTGCCTTGGCACAGGCCCAGGAGCTGGCGCAGC
AAGCCACGCCCGCTAAAGGTGCCACCCTCTCCCCTTCGTCGTCGACAGTC
ACCAAGCGGCGGCCCCGTCCGTTCCAAGCGGGGGACATGGTCATTATCAT
GGAGCGGCACGATAACTACTCCCACATTTACTTGGAGCCGGGCGGCATGT
TCCAAAACCGTCTAGGCCACTTCCACCATGACGACATGATCGGTAGATCC
GTTGGCGCCAAGGTTGTATCGCGCTCGGCCAGTGGCAAGTACATCCGTCT
CTTGCTACCCTCTCCAGAGCTGTGGACCCTAAGTATCAAGCAACGCACGC
AAATCGTGCAAGACTTGGATCAAAGCATGGTGGTCTTCATGCTGGGCTTG
CGACCAGGCATGCATGTGCTGGAGTCGGGAACAGGGTCAGGGGCCATGTC
ACATGCGATTTTGCGGACGATCAGCCCCAACGGGCATTTGCACACATTTG
AGTTTAATGAGGCAAGGGCACGGGAGGCAAGAGTAGATTTTGAGCATAAC
AAGGTCGGGCATCTCGTAACGGTGCGGCATGCGGATATTTGCCAGGAACT
GGGGTC
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Synonyms
Publications