jgi.p|Nanoce1779_2|551841, mRNA_2137 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551841
Unique NamemRNA_2137
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1068
Alignment locationscaffold_4:883940..885269 -

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Properties
Property NameValue
TranscriptId551927
TrackFilteredModels2
ProteinId551841
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:883940..885269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551841gene_2137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551841mRNA_2137-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2137CDS_2137Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2137 ID=mRNA_2137|Name=jgi.p|Nanoce1779_2|551841|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ATGGGCAATATATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAA
GATGAGTAAGGAGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGC
AGGAGAAAATCAAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGT
ACTATCTTTAAACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGA
AGACAAGAAAATGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCA
TGCGGATCCTGCTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAGATT
GTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCCCGATACGGACAT
TGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGAAGGACCCCGCTA
TTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATAGTTGAATCTGTC
AGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCCTGACTACCTGGC
ATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCTCGGGCATCGTCA
CGGAGCGGTACATGATCGATGGGACAATGTTTGAGATGTACGACGTCGGC
GGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTTTGATAATGTCAC
GGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACCAGGTTTTGTTCG
AGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAGCTCTTTAAAGAA
ATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCTCCTCTTTCTGAA
TAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGGACATCAAGGGCA
TATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGACTTTGACTCGGGC
GTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGACCGACCTAATGA
GAAGATTATCTACAACCACGTGACTTGCGCGACGGACACAAAGAATGTGG
AAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGCGGGAGTCTCAAG
GATAGTGGGTTCATGTAA
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protein sequence of jgi.p|Nanoce1779_2|551841

>mRNA_2137-protein ID=mRNA_2137-protein|Name=jgi.p|Nanoce1779_2|551841|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MGNICGTISAEEIKAAKMSKEVDQANEAAFKREQEKIKLLLLGAGESGKS
TIFKQMKLLYGAGTTLEDKKMMTPVIYSNTIGAMRILLDQAKQFGNDVEI
VDQEAIEIVKTIPDTDIDFKVGAAIKGLWKDPAIQKTWARRSEFQIVESV
RYYFNKIDVISQPDYLASDEDILYARVRTSGIVTERYMIDGTMFEMYDVG
GQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDASTNRMIEAIQLFKE
ICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGISQFSDFKGGLGDFDSG
VEYFVNLFLAVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGSLK
DSGFM*
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mRNA from alignment at scaffold_4:883940..885269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2137 ID=mRNA_2137|Name=jgi.p|Nanoce1779_2|551841|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_4:883940..885269- (Nannochloropsis oceanica)
ATGGGCAATATATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAA
GATGAGTAAGGAGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGC
AGGAGAAAATCAAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGT
ACTATCTTTAAACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGA
AGACAAGAAAATGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCA
TGCGGATCCTGCTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAGGTG
AGCAGGAAAGGGAGGGACTAGAAGGGTGGGGACGAAACCTTGTCCCCACC
CTACGAAGGTCTATATTATGCATGTTTGCTCCAGGTGAGTACTGTTTGCG
TGTCTGGTGAATATTCGTGAATATTTTGTGCCTGAATGGATGCGACAGAA
TGTGGGCCCTTGTGGACACCCTTGTGATTTTGTGCGAATGGGGTTGTGGC
TGCCGCTCAAACGCTGAAATGTTAGTCTATTTGTCACCTACGTCCATTCT
CTCTTACAGATTGTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCC
CGATACGGACATTGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGA
AGGACCCCGCTATTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATA
GTTGAATCTGTCAGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCC
TGACTACCTGGCATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCT
CGGGCATCGTCACGGAGCGGTACATGATCGATGGGACAATGTTTGAGATG
TACGACGTCGGCGGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTT
TGATAATGTCACGGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACC
AGGTTTTGTTCGAGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAG
CTCTTTAAAGAAATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCT
CCTCTTTCTGAATAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGG
ACATCAAGGGCATATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGAC
TTTGACTCGGGCGTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGA
CCGACCTAATGAGAAGATTATCTACAACCACGTGACTTGCGCGACGGACA
CAAAGAATGTGGAAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGC
GGGAGTCTCAAGGATAGTGGGTTCATGTAA
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Coding sequence (CDS) from alignment at scaffold_4:883940..885269-

>mRNA_2137 ID=mRNA_2137|Name=jgi.p|Nanoce1779_2|551841|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_4:883940..885269- (Nannochloropsis oceanica)
ATTGTGGATCAAGAAGCGATCGAAATAGTCAAGACCATCCCCGATACGGA
CATTGACTTCAAAGTGGGCGCCGCCATCAAGGGTCTTTGGAAGGACCCCG
CTATTCAGAAGACCTGGGCCCGCCGCTCAGAGTTCCAAATAGTTGAATCT
GTCAGGTACTACTTCAACAAAATTGATGTAATCTCTCAGCCTGACTACCT
GGCATCGGACGAGGACATTTTGTATGCGCGTGTGCGGACCTCGGGCATCG
TCACGGAGCGGTACATGATCGATGGGACAATGTTTGAGATGTACGACGTC
GGCGGGCAACGGAATGAGCGGAAGAAATGGATCCACTGTTTTGATAATGT
CACGGCGATCATTTTTGTGGCTGCTTTATCGGAGTATGACCAGGTTTTGT
TCGAGGATGCTTCGACCAACCGTATGATTGAGGCCATCCAGCTCTTTAAA
GAAATATGTAACAACAAGTTCTTCGCCAACTCATCCATGCTCCTCTTTCT
GAATAAAAAGGACCTCTTCGCGGAGAAGATTTGGGTCAAGGACATCAAGG
GCATATCTCAATTCTCGGATTTTAAGGGGGGGCTGGGCGACTTTGACTCG
GGCGTTGAGTACTTCGTCAATTTGTTCCTGGCTGTCAACGACCGACCTAA
TGAGAAGATTATCTACAACCACGTGACTTGCGCGACGGACACAAAGAATG
TGGAAGTTGTGATGAACGCGTGTAAGGACATTATTACCCGCGGGAGTCTC
AAGGATAGTGGGTTCATGTAAATGGGCAATATATGTGGTACGATTTCAGC
AGAGGAGATCAAGGCCGCCAAGATGAGTAAGGAGGTAGACCAGGCCAATG
AGGCGGCCTTCAAAAGGGAGCAGGAGAAAATCAAGCTGCTCCTTTTGGGG
GCCGGTGAGTCGGGCAAAAGTACTATCTTTAAACAAATGAAATTACTTTA
TGGCGCAGGAACTACGTTAGAAGACAAGAAAATGATGACCCCGGTAATCT
ACTCCAATACCATTGGAGCCATGCGGATCCTGCTTGACCAAGCCAAGCAA
TTTGGTAACGACGTCGAGATTGTGGATCAAGAAGCGATCGAAATAGTCAA
GACCATCCCCGATACGGACATTGACTTCAAAGTGGGCGCCGCCATCAAGG
GTCTTTGGAAGGACCCCGCTATTCAGAAGACCTGGGCCCGCCGCTCAGAG
TTCCAAATAGTTGAATCTGTCAGGTACTACTTCAACAAAATTGATGTAAT
CTCTCAGCCTGACTACCTGGCATCGGACGAGGACATTTTGTATGCGCGTG
TGCGGACCTCGGGCATCGTCACGGAGCGGTACATGATCGATGGGACAATG
TTTGAGATGTACGACGTCGGCGGGCAACGGAATGAGCGGAAGAAATGGAT
CCACTGTTTTGATAATGTCACGGCGATCATTTTTGTGGCTGCTTTATCGG
AGTATGACCAGGTTTTGTTCGAGGATGCTTCGACCAACCGTATGATTGAG
GCCATCCAGCTCTTTAAAGAAATATGTAACAACAAGTTCTTCGCCAACTC
ATCCATGCTCCTCTTTCTGAATAAAAAGGACCTCTTCGCGGAGAAGATTT
GGGTCAAGGACATCAAGGGCATATCTCAATTCTCGGATTTTAAGGGGGGG
CTGGGCGACTTTGACTCGGGCGTTGAGTACTTCGTCAATTTGTTCCTGGC
TGTCAACGACCGACCTAATGAGAAGATTATCTACAACCACGTGACTTGCG
CGACGGACACAAAGAATGTGGAAGTTGTGATGAACGCGTGTAAGGACATT
ATTACCCGCGGGAGTCTCAAGGATAGTGGGTTCATGTAAATGGGCAATAT
ATGTGGTACGATTTCAGCAGAGGAGATCAAGGCCGCCAAGATGAGTAAGG
AGGTAGACCAGGCCAATGAGGCGGCCTTCAAAAGGGAGCAGGAGAAAATC
AAGCTGCTCCTTTTGGGGGCCGGTGAGTCGGGCAAAAGTACTATCTTTAA
ACAAATGAAATTACTTTATGGCGCAGGAACTACGTTAGAAGACAAGAAAA
TGATGACCCCGGTAATCTACTCCAATACCATTGGAGCCATGCGGATCCTG
CTTGACCAAGCCAAGCAATTTGGTAACGACGTCGAG
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Synonyms
Publications