jgi.p|Nanoce1779_2|578440, mRNA_1929 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578440
Unique Name	mRNA_1929
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1738
Alignment location	scaffold_4:375335..377072 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578526
Track	FilteredModels2
ProteinId	578440

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:375335..377072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578440	gene_1929	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578440	mRNA_1929-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1929	CDS_1929	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:375335..377072+
coding sequence from alignment at scaffold_4:375335..377072+

mRNA sequence

>mRNA_1929 ID=mRNA_1929|Name=jgi.p|Nanoce1779_2|578440|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp
ACAGCCAACACACAAGAAAACAGCATCACTCAGACAACTATGAAGCGAAG
TCGCAGTAGCTTCAACCTGGTCGAACTCGGCCGCGGCGCTCCGCTTCTCC
CCTCCAAAAAGCTTCAACGGGCGCTCTTGTCCTCCTCGGCGTCAAGCGAG
CAACTTGCTGAACGTCTGTGTTTATCCAGTACTGGCACCCACCCCTTTCA
TGCAGATAATATTTCCATGTCTACCCTGGCGCGGCGCCCTGCCCTCGCCA
AAGTTATGCCTTCCCCTCGTTCCTTGGACACATTGGGTGCCGGCGCCCGC
CATCCCACTATCCGCCCCCCCCTGCACATTATCACGCTCAAGCTCCTCGA
AGGCTGCCAAGACGACAAAAAAGAACATTATGGCCTTCCCGACCCTTCAT
CACCTTCCTGTGTACCTGCTTGGGCTCCGCCTCCTGCCCACGACGGGCCG
TGCTATGGCCAGTCCGACAATGAGGACGAGGACTGCCCTTGCCCTCTTAT
GTTCAAGAAGCAGAGTGGTTTCATCTGCCCCAGCCCGATATGTAGCGCCA
CCACAACCGCTTCCAGCAGCAGTGGTAGCTATATGAGCGATAACGAGTCG
TTTGAGAGCGACGGAAGCGGCTGCAATGGCGGAGGGAGCGGAACTCCCTC
TTCCTCGTCCACACCGACCGAGGCTGACATCATGCACAAGCTGGTGCAAG
AAATGGAGCGCTTATACAACACTCAACAGCAACAGCTGCAGCAGCATCAT
CAATATACAATGCGAACTAAGGCACTGTCGGTAAGGAGTATTCCCCGCCG
GCCGTTTTCCCTCCACTACTGGGAGGACGGACCAAACTACCATTCCTCCA
CCTCGGCAGCAGCAGCAGCAGCAACAGCGGTGTGTGGGTCCCCAGGCTTG
ACCACTTAAATGAGCGAATTAGAAGGAAAGAACAGGAGTGAAATGGAAGA
TAAGATTGGCTGAGAGTGACGCCATGAGTGCTTGAGCACGTCACATAAAG
ATGGAGAGGGCAATGCGTGTGGCGCATGCATGTCTCTTTCTCCTCATCCC
CATAATTTTTTCTTCAAGCCGTAAGGGACTTGAAAGACTTAGATTGAGAT
AACGAAACGAAAACCATAAACCATGTGGGATGGACAGAATCCCAAAGAAA
TTTACTGTTGGCTTTGTGCGTGAGAGAGACAGACGAAAGAGAGACGATAA
CAGACGACAGGTTGTCGATATTAGCATGTATACGGGGCGCCATGTTCGTA
GAAGAGACATGGGATGTGTTGCTAGCTAACTACGGACCCATTGTTGAAAT
CCGTGACGAAGGAACTGATTGTGAACCTTTTTCATTTTGTACAACATTGC
GACTTGAAGAAAAAGGGCGATCAAGACCTGACAACCGTGTGTGCATGCAT
GAGAATCTATCATTTCGAAATAGATGTGGCGGAAGCCGAGATAAATGAGA
TAGACTCGTGTGTATATAAAACCCGCCATTCTTTGTGCACCTCTGTGTGT
GTGCGCGCATGCACAAATGAAATATGCCCTTATTCGGCCTTTCAGTCATA
AGTAAAAGTAAGGAATTTCGTCCATCTCTCCACGTGAACTTTTAACACTA
CCGGCTACAATTAATCACATCCAATTATCTCCACTCTGTTATTTTAAGAA
ATGACTGCATGGGTGAACCATGGAGTGATGGCAAGCACAAACTCGGTCAA
ATAAAACAAGAGAAAGAAAACTGGCATGAATTGGTATA

protein sequence of jgi.p|Nanoce1779_2|578440

>mRNA_1929-protein ID=mRNA_1929-protein|Name=jgi.p|Nanoce1779_2|578440|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGT
HPFHADNISMSTLARRPALAKVMPSPRSLDTLGAGARHPTIRPPLHIITL
KLLEGCQDDKKEHYGLPDPSSPSCVPAWAPPPAHDGPCYGQSDNEDEDCP
CPLMFKKQSGFICPSPICSATTTASSSSGSYMSDNESFESDGSGCNGGGS
GTPSSSSTPTEADIMHKLVQEMERLYNTQQQQLQQHHQYTMRTKALSVRS
IPRRPFSLHYWEDGPNYHSSTSAAAAAATAVCGSPGLTT*

mRNA from alignment at scaffold_4:375335..377072+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1929 ID=mRNA_1929|Name=jgi.p|Nanoce1779_2|578440|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at scaffold_4:375335..377072+ (Nannochloropsis oceanica)
ACAGCCAACACACAAGAAAACAGCATCACTCAGACAACTATGAAGCGAAG
TCGCAGTAGCTTCAACCTGGTCGAACTCGGCCGCGGCGCTCCGCTTCTCC
CCTCCAAAAAGCTTCAACGGGCGCTCTTGTCCTCCTCGGCGTCAAGCGAG
CAACTTGCTGAACGTCTGTGTTTATCCAGTACTGGCACCCACCCCTTTCA
TGCAGATAATATTTCCATGTCTACCCTGGCGCGGCGCCCTGCCCTCGCCA
AAGTTATGCCTTCCCCTCGTTCCTTGGACACATTGGGTGCCGGCGCCCGC
CATCCCACTATCCGCCCCCCCCTGCACATTATCACGCTCAAGCTCCTCGA
AGGCTGCCAAGACGACAAAAAAGAACATTATGGCCTTCCCGACCCTTCAT
CACCTTCCTGTGTACCTGCTTGGGCTCCGCCTCCTGCCCACGACGGGCCG
TGCTATGGCCAGTCCGACAATGAGGACGAGGACTGCCCTTGCCCTCTTAT
GTTCAAGAAGCAGAGTGGTTTCATCTGCCCCAGCCCGATATGTAGCGCCA
CCACAACCGCTTCCAGCAGCAGTGGTAGCTATATGAGCGATAACGAGTCG
TTTGAGAGCGACGGAAGCGGCTGCAATGGCGGAGGGAGCGGAACTCCCTC
TTCCTCGTCCACACCGACCGAGGCTGACATCATGCACAAGCTGGTGCAAG
AAATGGAGCGCTTATACAACACTCAACAGCAACAGCTGCAGCAGCATCAT
CAATATACAATGCGAACTAAGGCACTGTCGGTAAGGAGTATTCCCCGCCG
GCCGTTTTCCCTCCACTACTGGGAGGACGGACCAAACTACCATTCCTCCA
CCTCGGCAGCAGCAGCAGCAGCAACAGCGGTGTGTGGGTCCCCAGGCTTG
ACCACTTAAATGAGCGAATTAGAAGGAAAGAACAGGAGTGAAATGGAAGA
TAAGATTGGCTGAGAGTGACGCCATGAGTGCTTGAGCACGTCACATAAAG
ATGGAGAGGGCAATGCGTGTGGCGCATGCATGTCTCTTTCTCCTCATCCC
CATAATTTTTTCTTCAAGCCGTAAGGGACTTGAAAGACTTAGATTGAGAT
AACGAAACGAAAACCATAAACCATGTGGGATGGACAGAATCCCAAAGAAA
TTTACTGTTGGCTTTGTGCGTGAGAGAGACAGACGAAAGAGAGACGATAA
CAGACGACAGGTTGTCGATATTAGCATGTATACGGGGCGCCATGTTCGTA
GAAGAGACATGGGATGTGTTGCTAGCTAACTACGGACCCATTGTTGAAAT
CCGTGACGAAGGAACTGATTGTGAACCTTTTTCATTTTGTACAACATTGC
GACTTGAAGAAAAAGGGCGATCAAGACCTGACAACCGTGTGTGCATGCAT
GAGAATCTATCATTTCGAAATAGATGTGGCGGAAGCCGAGATAAATGAGA
TAGACTCGTGTGTATATAAAACCCGCCATTCTTTGTGCACCTCTGTGTGT
GTGCGCGCATGCACAAATGAAATATGCCCTTATTCGGCCTTTCAGTCATA
AGTAAAAGTAAGGAATTTCGTCCATCTCTCCACGTGAACTTTTAACACTA
CCGGCTACAATTAATCACATCCAATTATCTCCACTCTGTTATTTTAAGAA
ATGACTGCATGGGTGAACCATGGAGTGATGGCAAGCACAAACTCGGTCAA
ATAAAACAAGAGAAAGAAAACTGGCATGAATTGGTATA

Coding sequence (CDS) from alignment at scaffold_4:375335..377072+

>mRNA_1929 ID=mRNA_1929|Name=jgi.p|Nanoce1779_2|578440|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_4:375335..377072+ (Nannochloropsis oceanica)
ATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCCGCGGCGC
TCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCCTCCTCGG
CGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTACTGGCACC
CACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGCGGCGCCC
TGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACATTGGGTG
CCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTATCACGCTC
AAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATGGCCTTCC
CGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCTCCTGCCC
ACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGACTGCCCT
TGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCAGCCCGAT
ATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTATATGAGCG
ATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGGAGGGAGC
GGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCATGCACAA
GCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAACAGCTGC
AGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGTAAGGAGT
ATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGACCAAACTA
CCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTGTGTGGGT
CCCCAGGCTTGACCACTTAA

Synonyms

Publications