jgi.p|Nanoce1779_2|578719, mRNA_2003 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578719
Unique NamemRNA_2003
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length715
Alignment locationscaffold_4:544964..546132 +

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Properties
Property NameValue
TranscriptId578805
TrackFilteredModels2
ProteinId578719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:544964..546132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578719gene_2003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578719mRNA_2003-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2003CDS_2003Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Nanoce1779_2|578719|organism=Nannochloropsis oceanica|type=mRNA|length=715bp
GGTGCGCTTCCTCCCCTCAATCCGTCCCCACCTACCCCTCCACTTGCGGC
AGATCCAACTCCATTCCTTCCCCCTCTTAGCCCCCCCCCGCCTGCTCCTC
CTCCTACTGCTCCTCCTGGAGCGCCATTTCCTCCCCCACCACCATTCGCC
CACTGCGGTCCTACTCCTTGCTGCTGCTGTGCGTACTGCTGAGCAGTAGC
AGCAGCAGGAGCAGTGGGGTTGTTGCCGGGAAGGGGAGCCGTTGGGTAGT
AATAGGGGCCAACGGAATGAGGAGGAGGAGGAGGAGGAAGAGGGCCGGAG
GGAGGAGGGGGTCCAGAGGGACCAGAAGGATACATTTGGTTTGACGATGC
CCACCCCCCGCCTTGAGGCTGGGGCTGCATGTGATTACCAGGCACGCCGG
GGGGCTGGCCAGCATAGGACCGGGCGATTTCCGCGTCCATGGTCAGGTTT
GGGTATTCGAGGCTGCTGCCCCTGCTGCCCGTGCCTCCTGTGGTTGCTGC
CGTTCCTTCTTCTTCTGCCTGCTGCTGCTGCTGCTGTCTGGTACTGCGTC
GGCTAATCGCTGGTACCGTCGTTGTCGTTGTTGTCGTCGTCGTAGCACCC
GGTGCTCTGGGGTGGTGTGCAGCTGCTGCGGCTGCTGGGCTTCCTTGTTT
TCGAAAACAAGTCCACGCGTATAATACGCGCCTCCTGGTCGTCCGATTTC
AATGTGTGTGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|578719

>mRNA_2003-protein ID=mRNA_2003-protein|Name=jgi.p|Nanoce1779_2|578719|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MVRFGYSRLLPLLPVPPVVAAVPSSSACCCCCCLVLRRLIAGTVVVVVVV
VVAPGALGWCAAAAAAGLPCFRKQVHAYNTRLLVVRFQCVCL
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mRNA from alignment at scaffold_4:544964..546132+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Nanoce1779_2|578719|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp|location=Sequence derived from alignment at scaffold_4:544964..546132+ (Nannochloropsis oceanica)
GGTGCGCTTCCTCCCCTCAATCCGTCCCCACCTACCCCTCCACTTGCGGC
AGATCCAACTCCATTCCTTCCCCCTCTTAGCCCCCCCCCGCCTGCTCCTC
CTCCTACTGCTCCTCCTGGAGCGCCATTTCCTCCCCCACCACCATTCGCC
CACTGCGGTCCTACTCCTTGCTGCTGCTGTGCGTACTGCTGAGCAGTAGC
AGCAGCAGGAGCAGTGGGGTTGTTGCCGGGAAGGGGAGCCGTTGGGTAGT
AATAGGGGCCAACGGAATGAGGAGGAGGAGGAGGAGGAAGAGGGCCGGAG
GGAGGAGGGGGTCCAGAGGGACCAGAAGGATACTGTGTGGAAAGAAGAAG
GGAGGGAGGGAGGGGAGATGAGATCAAAATGTGTCTTATTTGAACCAAGG
GGATTGGGACGACTAACAACTTAAGGAAAGGAATGGCAAACTTTATCTGT
TTCAATCTTCTTATGCCATGAACCCGACTAAACGATGAATAATTAAAACA
TGATACACGTACCATTTGGTTTGACGATGCCCACCCCCCGCCTTGAGGCT
GGGGCTGCTGTTTTTGTTTAAGTTTGAAGGTTGCGTTTGTGTCAACAGAT
GTAAATTTACTAACTCACATAAACTGTGAAAGAAAAAAAACGCCCTTCCT
CTCCTTTTCCTCCCCTCTTTCACCATCTTCCCAAGGCGAACCACTAACCA
TATGCACTTACCATGTGATTACCAGGCACGCCGGGGGGCTGGCCAGCATA
GGACCGGGCCTGGATACGTGTGGATGAGTAAAAGAAAGAATGTTAGATGT
TTGTCCGGGGGGGCAAGGATGTTGTTGCTGCTGCTACACACACGCAACAT
ATGGTCAGGCAGGCATGCGGATCACTTACGATTTCCGCGTCCATGGTCAG
GTTTGGGTATTCGAGGCTGCTGCCCCTGCTGCCCGTGCCTCCTGTGGTTG
CTGCCGTTCCTTCTTCTTCTGCCTGCTGCTGCTGCTGCTGTCTGGTACTG
CGTCGGCTAATCGCTGGTACCGTCGTTGTCGTTGTTGTCGTCGTCGTAGC
ACCCGGTGCTCTGGGGTGGTGTGCAGCTGCTGCGGCTGCTGGGCTTCCTT
GTTTTCGAAAACAAGTCCACGCGTATAATACGCGCCTCCTGGTCGTCCGA
TTTCAATGTGTGTGTCTGT
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Coding sequence (CDS) from alignment at scaffold_4:544964..546132+

>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Nanoce1779_2|578719|organism=Nannochloropsis oceanica|type=CDS|length=277bp|location=Sequence derived from alignment at scaffold_4:544964..546132+ (Nannochloropsis oceanica)
ATGGTCAGGTTTGGGTATTCGAGGCTGCTGCCCCTGCTGCCCGTGCCTCC
TGTGGTTGCTGCCGTTCCTTCTTCTTCTGCCTGCTGCTGCTGCTGCTGTC
TGGTACTGCGTCGGCTAATCGCTGGTACCGTCGTTGTCGTTGTTGTCGTC
GTCGTAGCACCCGGTGCTCTGGGGTGGTGTGCAGCTGCTGCGGCTGCTGG
GCTTCCTTGTTTTCGAAAACAAGTCCACGCGTATAATACGCGCCTCCTGG
TCGTCCGATTTCAATGTGTGTGTCTGT
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Synonyms
Publications