jgi.p|Nanoce1779_2|579004, mRNA_2086 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579004
Unique Name	mRNA_2086
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1437
Alignment location	scaffold_4:767269..768975 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579090
Track	FilteredModels2
ProteinId	579004

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:767269..768975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579004	gene_2086	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579004	mRNA_2086-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2086	CDS_2086	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:767269..768975+
coding sequence from alignment at scaffold_4:767269..768975+

mRNA sequence

>mRNA_2086 ID=mRNA_2086|Name=jgi.p|Nanoce1779_2|579004|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
CTTGTCCGCTTGGTTATGGACGGCATTGAACCTTATATCGACATCGAGGG
CAGTGTGCGCACTTTGCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGA
CTCTCGATCAAACGCAAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGC
AGGACGGATCGGAACTGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCG
GCAGGCCCAACACCTCAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGC
ACTGGGACGCGTTGATCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGT
GAGGAAGACACCCAACTGCAGCGGCGACGGAGACGACTGCTCGTTTTGGT
AAATCCGAAGTCAGGAAAGCAGCAAGCACATTCCATCTACACCGCCGTGG
TCGCCCCTATGCTCGCTCAAGCAGACATAGAGCACGAGATGGTCGTGACA
ATGCGCATGCAGCACGCCAAGGATATGATATACGCGCTGGACGTGGAAGC
GTGGGATGGCGTCGTCGCCATAGGAGGAGATGGTCTCCTTAGCGATGTTA
TTAATGGGCTTTTCTCTCGTGACCCTGAAAACCAACGCGCCCTTTTGGAG
CTTCCGGTGGCCATTGTTAACGGTGGTACAGGAAACGGATTCTTCTCTTC
CCTTCTTCACCGGCAAAACGAGGCCTTCAATCCAATCTCTGCCACTTTCC
TTTTGCTAAAAGCAAAGTCTACATTGCCTGCGGACCTCTCGCTCGTCGAG
ACGGCAGATGGCCAGCGGCACATCAGCTTTCTGTCCCTCTCTTTCGGGCT
TATAGCCGACGTTGATTTGGAAAGTGAAGTAATTAGGTGGGCAGGGGCGT
TACGAATGGACTTATTCTCTCTCTACGCTATTTTTAGGAGTAGGACATAC
CGCGCCCGGCTTAGTTTTTGGTCATGCGAGGAGGGAGAAAGCTCCTTCGC
CGACGCCATTCATCTACCGCCGCTACACACGCCGCTCCCAATGAAGAACG
AATGGATCAGCATAGAGGATGATTTTTTAACGATATTGATCTCGCATGTG
AGTCATATCGCAGAAGCGGTGCATTCAGCACCTGGGAAGAAGATGGGCGA
CGGGACTTTCCAGCTTATGGTATTACGCCGGCAGTCTTCTCTCTCTCGCA
TGCGGCTCATTTCTCTCTTCATGGCACTGGAGCACGGGGACCACGTACCT
TTAAAGGAAGTGGAAATTTATCATGCCCGGGCATATCGGCTGGAGCCCTT
GACAGATCAGGGACGCTACTCGCTCGATGGAGAGACCATCCCCTTTGGAC
ACGTGCAAGGCAAGATCCTTCCTCTCGCCCTGCAAGTACTCTGCGATTCG
TAGAATCAAGAAAACGATTTAGCGGTGGAGGATGGATGTGCATATTGGAA
TTTAAAAGTAAAAGAGTTGACATAAAGGCGCATGCTA

protein sequence of jgi.p|Nanoce1779_2|579004

>mRNA_2086-protein ID=mRNA_2086-protein|Name=jgi.p|Nanoce1779_2|579004|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MDGIEPYIDIEGSVRTLLRDVVGSSVIETLDQTQGCKLLVFAYPRRTDRN
CLCGNKRLSLERQAQHLRLTAPASSVAKHWDALIKKWCRGGHQGGEEDTQ
LQRRRRRLLVLVNPKSGKQQAHSIYTAVVAPMLAQADIEHEMVVTMRMQH
AKDMIYALDVEAWDGVVAIGGDGLLSDVINGLFSRDPENQRALLELPVAI
VNGGTGNGFFSSLLHRQNEAFNPISATFLLLKAKSTLPADLSLVETADGQ
RHISFLSLSFGLIADVDLESEVIRWAGALRMDLFSLYAIFRSRTYRARLS
FWSCEEGESSFADAIHLPPLHTPLPMKNEWISIEDDFLTILISHVSHIAE
AVHSAPGKKMGDGTFQLMVLRRQSSLSRMRLISLFMALEHGDHVPLKEVE
IYHARAYRLEPLTDQGRYSLDGETIPFGHVQGKILPLALQVLCDS*

mRNA from alignment at scaffold_4:767269..768975+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2086 ID=mRNA_2086|Name=jgi.p|Nanoce1779_2|579004|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp|location=Sequence derived from alignment at scaffold_4:767269..768975+ (Nannochloropsis oceanica)
CTTGTCCGCTTGGTTATGGACGGCATTGAACCTTATATCGACATCGAGGG
CAGTGTGCGCACTTTGCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGA
CTCTCGATCAAACGCAAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGC
AGGACGGATCGGAACTGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCG
GCAGGCCCAACACCTCAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGC
ACTGGGACGCGTTGATCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGT
GAGGAAGACACCCAACTGCAGCGGCGACGGAGACGACTGGTAAGAAAGCA
AGCGGGTGAGTGGAATGTGAGGCGGCAGAACAGAAGTCTCTTTTCATTTG
AAGTGGAATCAATTCCTACTTGCATCGCTTCGAAACTCCTAAATCCTATA
TACAGCTCGTTTTGGTAAATCCGAAGTCAGGAAAGCAGCAAGCACATTCC
ATCTACACCGCCGTGGTCGCCCCTATGCTCGCTCAAGCAGACATAGAGCA
CGAGATGGTCGTGACAATGCGCATGCAGCACGCCAAGGATATGATATACG
CGCTGGACGTGGAAGCGTGGGATGGCGTCGTCGCCATAGGAGGAGATGGT
CTCCTTAGCGATGTTATTAATGGGCTTTTCTCTCGTGACCCTGAAAACCA
ACGCGCCCTTTTGGAGCTTCCGGTGGCCATTGTTAACGGTGGTACAGGAA
ACGGATTCTTCTCTTCCCTTCTTCACCGGCAAAACGAGGCCTTCAATCCA
ATCTCTGCCACTTTCCTTTTGCTAAAAGCAAAGTCTACATTGCCTGCGGA
CCTCTCGCTCGTCGAGACGGCAGATGGCCAGCGGCACATCAGCTTTCTGT
CCCTCTCTTTCGGGCTTATAGCCGACGTTGATTTGGAAAGTGAAGTAATT
AGGTGGGCAGGGGCGTTACGAATGGACTTATTCTCTCTCTACGCTATTTT
TAGGAGTAGGACATACCGCGCCCGGCTTAGTTTTTGGTCATGCGAGGAGG
GAGAAAGCTCCTTCGCCGACGCCATTCATCTACCGCCGCTACACACGCCG
CTCCCAATGAAGAACGAATGGATCAGCATAGAGGATGATTTTTTAACGGT
ACGTGCGAAGGGTGCGATATGCATAGAGAGCGGACGGAATAATTTAATCG
AGGGTGATAAGCTGTGTCATTGACAAGAGGGCCAGTTATTCCCCTACTGT
GCGTCACTCACATACAACTGTCTGTTCATTCCCACCCCTTCAAAAAACAT
AGATATTGATCTCGCATGTGAGTCATATCGCAGAAGCGGTGCATTCAGCA
CCTGGGAAGAAGATGGGCGACGGGACTTTCCAGCTTATGGTATTACGCCG
GCAGTCTTCTCTCTCTCGCATGCGGCTCATTTCTCTCTTCATGGCACTGG
AGCACGGGGACCACGTACCTTTAAAGGAAGTGGAAATTTATCATGCCCGG
GCATATCGGCTGGAGCCCTTGACAGATCAGGGACGCTACTCGCTCGATGG
AGAGACCATCCCCTTTGGACACGTGCAAGGCAAGATCCTTCCTCTCGCCC
TGCAAGTACTCTGCGATTCGTAGAATCAAGAAAACGATTTAGCGGTGGAG
GATGGATGTGCATATTGGAATTTAAAAGTAAAAGAGTTGACATAAAGGCG
CATGCTA

Coding sequence (CDS) from alignment at scaffold_4:767269..768975+

>mRNA_2086 ID=mRNA_2086|Name=jgi.p|Nanoce1779_2|579004|organism=Nannochloropsis oceanica|type=CDS|length=4014bp|location=Sequence derived from alignment at scaffold_4:767269..768975+ (Nannochloropsis oceanica)
ATGGACGGCATTGAACCTTATATCGACATCGAGGGCAGTGTGCGCACTTT
GCTTAGGGACGTGGTGGGGTCTTCTGTAATCGAGACTCTCGATCAAACGC
AAGGCTGCAAGCTCCTCGTGTTCGCCTACCCCCGCAGGACGGATCGGAAC
TGTCTTTGCGGCAACAAACGGCTGTCCTTGGAGCGGCAGGCCCAACACCT
CAGGTTAACAGCACCAGCATCCAGTGTTGCAAAGCACTGGGACGCGTTGA
TCAAGAAATGGTGTCGGGGAGGACACCAGGGTGGTGAGGAAGACACCCAA
CTGCAGCGGCGACGGAGACGACTGCTCGTTTTGGTAAATCCGAAGTCAGG
AAAGCAGCAAGCACATTCCATCTACACCGCCGTGGTCGCCCCTATGCTCG
CTCAAGCAGACATAGAGCACGAGATGGTCGTGACAATGCGCATGCAGCAC
GCCAAGGATATGATATACGCGCTGGACGTGGAAGCGTGGGATGGCGTCGT
CGCCATAGGAGGAGATGGTCTCCTTAGCGATGTTATTAATGGGCTTTTCT
CTCGTGACCCTGAAAACCAACGCGCCCTTTTGGAGCTTCCGGTGGCCATT
GTTAACGGTGGTACAGGAAACGGATTCTTCTCTTCCCTTCTTCACCGGCA
AAACGAGGCCTTCAATCCAATCTCTGCCACTTTCCTTTTGCTAAAAGCAA
AGTCTACATTGCCTGCGGACCTCTCGCTCGTCGAGACGGCAGATGGCCAG
CGGCACATCAGCTTTCTGTCCCTCTCTTTCGGGCTTATAGCCGACGTTGA
TTTGGAAAGTGAAGTAATTAGGTGGGCAGGGGCGTTACGAATGGACTTAT
TCTCTCTCTACGCTATTTTTAGGAGTAGGACATACCGCGCCCGGCTTAGT
TTTTGGTCATGCGAGGAGGGAGAAAGCTCCTTCGCCGACGCCATTCATCT
ACCGCCGCTACACACGCCGCTCCCAATGAAGAACGAATGGATCAGCATAG
AGGATGATTTTTTAACGATATTGATCTCGCATGTGAGTCATATCGCAGAA
GCGGTGCATTCAGCACCTGGGAAGAAGATGGGCGACGGGACTTTCCAGCT
TATGGTATTACGCCGGCAGTCTTCTCTCTCTCGCATGCGGCTCATTTCTC
TCTTCATGGCACTGGAGCACGGGGACCACGTACCTTTAAAGGAAGTGGAA
ATTTATCATGCCCGGGCATATCGGCTGGAGCCCTTGACAGATCAGGGACG
CTACTCGCTCGATGGAGAGACCATCCCCTTTGGACACGTGCAAGGCAAGA
TCCTTCCTCTCGCCCTGCAAGTACTCTGCGATTCGTAGATGGACGGCATT
GAACCTTATATCGACATCGAGGGCAGTGTGCGCACTTTGCTTAGGGACGT
GGTGGGGTCTTCTGTAATCGAGACTCTCGATCAAACGCAAGGCTGCAAGC
TCCTCGTGTTCGCCTACCCCCGCAGGACGGATCGGAACTGTCTTTGCGGC
AACAAACGGCTGTCCTTGGAGCGGCAGGCCCAACACCTCAGGTTAACAGC
ACCAGCATCCAGTGTTGCAAAGCACTGGGACGCGTTGATCAAGAAATGGT
GTCGGGGAGGACACCAGGGTGGTGAGGAAGACACCCAACTGCAGCGGCGA
CGGAGACGACTGCTCGTTTTGGTAAATCCGAAGTCAGGAAAGCAGCAAGC
ACATTCCATCTACACCGCCGTGGTCGCCCCTATGCTCGCTCAAGCAGACA
TAGAGCACGAGATGGTCGTGACAATGCGCATGCAGCACGCCAAGGATATG
ATATACGCGCTGGACGTGGAAGCGTGGGATGGCGTCGTCGCCATAGGAGG
AGATGGTCTCCTTAGCGATGTTATTAATGGGCTTTTCTCTCGTGACCCTG
AAAACCAACGCGCCCTTTTGGAGCTTCCGGTGGCCATTGTTAACGGTGGT
ACAGGAAACGGATTCTTCTCTTCCCTTCTTCACCGGCAAAACGAGGCCTT
CAATCCAATCTCTGCCACTTTCCTTTTGCTAAAAGCAAAGTCTACATTGC
CTGCGGACCTCTCGCTCGTCGAGACGGCAGATGGCCAGCGGCACATCAGC
TTTCTGTCCCTCTCTTTCGGGCTTATAGCCGACGTTGATTTGGAAAGTGA
AGTAATTAGGTGGGCAGGGGCGTTACGAATGGACTTATTCTCTCTCTACG
CTATTTTTAGGAGTAGGACATACCGCGCCCGGCTTAGTTTTTGGTCATGC
GAGGAGGGAGAAAGCTCCTTCGCCGACGCCATTCATCTACCGCCGCTACA
CACGCCGCTCCCAATGAAGAACGAATGGATCAGCATAGAGGATGATTTTT
TAACGATATTGATCTCGCATGTGAGTCATATCGCAGAAGCGGTGCATTCA
GCACCTGGGAAGAAGATGGGCGACGGGACTTTCCAGCTTATGGTATTACG
CCGGCAGTCTTCTCTCTCTCGCATGCGGCTCATTTCTCTCTTCATGGCAC
TGGAGCACGGGGACCACGTACCTTTAAAGGAAGTGGAAATTTATCATGCC
CGGGCATATCGGCTGGAGCCCTTGACAGATCAGGGACGCTACTCGCTCGA
TGGAGAGACCATCCCCTTTGGACACGTGCAAGGCAAGATCCTTCCTCTCG
CCCTGCAAGTACTCTGCGATTCGTAGATGGACGGCATTGAACCTTATATC
GACATCGAGGGCAGTGTGCGCACTTTGCTTAGGGACGTGGTGGGGTCTTC
TGTAATCGAGACTCTCGATCAAACGCAAGGCTGCAAGCTCCTCGTGTTCG
CCTACCCCCGCAGGACGGATCGGAACTGTCTTTGCGGCAACAAACGGCTG
TCCTTGGAGCGGCAGGCCCAACACCTCAGGTTAACAGCACCAGCATCCAG
TGTTGCAAAGCACTGGGACGCGTTGATCAAGAAATGGTGTCGGGGAGGAC
ACCAGGGTGGTGAGGAAGACACCCAACTGCAGCGGCGACGGAGACGACTG
CTCGTTTTGGTAAATCCGAAGTCAGGAAAGCAGCAAGCACATTCCATCTA
CACCGCCGTGGTCGCCCCTATGCTCGCTCAAGCAGACATAGAGCACGAGA
TGGTCGTGACAATGCGCATGCAGCACGCCAAGGATATGATATACGCGCTG
GACGTGGAAGCGTGGGATGGCGTCGTCGCCATAGGAGGAGATGGTCTCCT
TAGCGATGTTATTAATGGGCTTTTCTCTCGTGACCCTGAAAACCAACGCG
CCCTTTTGGAGCTTCCGGTGGCCATTGTTAACGGTGGTACAGGAAACGGA
TTCTTCTCTTCCCTTCTTCACCGGCAAAACGAGGCCTTCAATCCAATCTC
TGCCACTTTCCTTTTGCTAAAAGCAAAGTCTACATTGCCTGCGGACCTCT
CGCTCGTCGAGACGGCAGATGGCCAGCGGCACATCAGCTTTCTGTCCCTC
TCTTTCGGGCTTATAGCCGACGTTGATTTGGAAAGTGAAGTAATTAGGTG
GGCAGGGGCGTTACGAATGGACTTATTCTCTCTCTACGCTATTTTTAGGA
GTAGGACATACCGCGCCCGGCTTAGTTTTTGGTCATGCGAGGAGGGAGAA
AGCTCCTTCGCCGACGCCATTCATCTACCGCCGCTACACACGCCGCTCCC
AATGAAGAACGAATGGATCAGCATAGAGGATGATTTTTTAACGATATTGA
TCTCGCATGTGAGTCATATCGCAGAAGCGGTGCATTCAGCACCTGGGAAG
AAGATGGGCGACGGGACTTTCCAGCTTATGGTATTACGCCGGCAGTCTTC
TCTCTCTCGCATGCGGCTCATTTCTCTCTTCATGGCACTGGAGCACGGGG
ACCACGTACCTTTAAAGGAAGTGGAAATTTATCATGCCCGGGCATATCGG
CTGGAGCCCTTGACAGATCAGGGACGCTACTCGCTCGATGGAGAGACCAT
CCCCTTTGGACACGTGCAAGGCAAGATCCTTCCTCTCGCCCTGCAAGTAC
TCTGCGATTCGTAG

Synonyms

Publications