jgi.p|Nanoce1779_2|579304, mRNA_2165 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579304
Unique NamemRNA_2165
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length754
Alignment locationscaffold_4:938478..939231 +

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Properties
Property NameValue
TranscriptId579390
TrackFilteredModels2
ProteinId579304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:938478..939231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579304gene_2165Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579304mRNA_2165-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2165CDS_2165Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2165 ID=mRNA_2165|Name=jgi.p|Nanoce1779_2|579304|organism=Nannochloropsis oceanica|type=mRNA|length=754bp
TACTTGATACCACTATCGCGTTTACGCATCGTCGCTCTCGCATCTTTTTC
CCTCTGGTCTCTCTCTGCCTTTTCATAACTGCTCTTCCGTCGAGCCGCCC
CAACGAGGCAAGCAAGATTTTGCTTGAGCATCTCCATCCGACGGGGACTG
GGGGCGAAATACAAGATATGTAAATCAGTCACTGACCGGGCTGCAAATTG
GTATTTGAAAACAAATAATTTGTACTGTATATGAGGCGAGCCCACGACAT
AAATCTCGCCTGCCCCTTTATTTGAATGCCAACATACTTGTTTCTCCTCT
CGATCTATGTCGCCTACATTCTGCATCAATATCGATATGGAAAGTGTGAA
GACGTGTCACATACGCACACATACGCACATAAACACACTCGATATCTATA
TTATTCTTTTTCCGCGCACGCTCGTAGCCACTCGCATATAGAGGTACAAA
ATTCACTGCTGACTCATTTACTACTACAGAAACTTTTGTTTCACTCCTTG
TTCAAATAGGACGGACACCACATCCATCGCCCATGAGCGAATAGTAAATG
TGCTCTCCTTCCTGTACGACCGATTGGCGAGCATTCTCCGTTGATTTGTC
CGGCATGGCTTCTAGACTATCGCCGCCGCCACCATCCCCTCTTTCCCCCC
ATCTCCCTCTCCCGTCTCCTATTGTCACAGCACACACTTAGACCTTCGTC
TCTTTAGCCCACTCTCCCTCCATCCCCCCCCCCTCCTTCTCCTCCTCCTC
CTCC
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protein sequence of jgi.p|Nanoce1779_2|579304

>mRNA_2165-protein ID=mRNA_2165-protein|Name=jgi.p|Nanoce1779_2|579304|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MPTYLFLLSIYVAYILHQYRYGKCEDVSHTHTYAHKHTRYLYYSFSAHAR
SHSHIEVQNSLLTHLLLQKLLFHSLFK*
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mRNA from alignment at scaffold_4:938478..939231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2165 ID=mRNA_2165|Name=jgi.p|Nanoce1779_2|579304|organism=Nannochloropsis oceanica|type=mRNA|length=754bp|location=Sequence derived from alignment at scaffold_4:938478..939231+ (Nannochloropsis oceanica)
TACTTGATACCACTATCGCGTTTACGCATCGTCGCTCTCGCATCTTTTTC
CCTCTGGTCTCTCTCTGCCTTTTCATAACTGCTCTTCCGTCGAGCCGCCC
CAACGAGGCAAGCAAGATTTTGCTTGAGCATCTCCATCCGACGGGGACTG
GGGGCGAAATACAAGATATGTAAATCAGTCACTGACCGGGCTGCAAATTG
GTATTTGAAAACAAATAATTTGTACTGTATATGAGGCGAGCCCACGACAT
AAATCTCGCCTGCCCCTTTATTTGAATGCCAACATACTTGTTTCTCCTCT
CGATCTATGTCGCCTACATTCTGCATCAATATCGATATGGAAAGTGTGAA
GACGTGTCACATACGCACACATACGCACATAAACACACTCGATATCTATA
TTATTCTTTTTCCGCGCACGCTCGTAGCCACTCGCATATAGAGGTACAAA
ATTCACTGCTGACTCATTTACTACTACAGAAACTTTTGTTTCACTCCTTG
TTCAAATAGGACGGACACCACATCCATCGCCCATGAGCGAATAGTAAATG
TGCTCTCCTTCCTGTACGACCGATTGGCGAGCATTCTCCGTTGATTTGTC
CGGCATGGCTTCTAGACTATCGCCGCCGCCACCATCCCCTCTTTCCCCCC
ATCTCCCTCTCCCGTCTCCTATTGTCACAGCACACACTTAGACCTTCGTC
TCTTTAGCCCACTCTCCCTCCATCCCCCCCCCCTCCTTCTCCTCCTCCTC
CTCC
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Coding sequence (CDS) from alignment at scaffold_4:938478..939231+

>mRNA_2165 ID=mRNA_2165|Name=jgi.p|Nanoce1779_2|579304|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_4:938478..939231+ (Nannochloropsis oceanica)
ATGCCAACATACTTGTTTCTCCTCTCGATCTATGTCGCCTACATTCTGCA
TCAATATCGATATGGAAAGTGTGAAGACGTGTCACATACGCACACATACG
CACATAAACACACTCGATATCTATATTATTCTTTTTCCGCGCACGCTCGT
AGCCACTCGCATATAGAGGTACAAAATTCACTGCTGACTCATTTACTACT
ACAGAAACTTTTGTTTCACTCCTTGTTCAAATAG
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Synonyms
Publications