jgi.p|Nanoce1779_2|628364, mRNA_2240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628364
Unique Name	mRNA_2240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1313
Alignment location	scaffold_4:1150122..1151434 +

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Properties


Property Name	Value
TranscriptId	628450
Track	FilteredModels2
ProteinId	628364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1150122..1151434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628364	gene_2240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628364	mRNA_2240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2240	CDS_2240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1150122..1151434+
coding sequence from alignment at scaffold_4:1150122..1151434+

mRNA sequence

>mRNA_2240 ID=mRNA_2240|Name=jgi.p|Nanoce1779_2|628364|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp
CATGCCTCGTCCTCCCACTGGACATGGCGCAGTTCCCTTCTGGCAGTACT
CCCCCCCGCCTCCCTACCCTACCTCCTCATCCTCCTCCACCTCCTCCTCT
TGTCCTTCCTCCTCCTCCTTTTCTGCGACTCGTGGGCAGGACCAGCCGCC
ACAGCAAGACCAGCAACATCCGAGCGTTTGGCTTCCTTCCTCTACCTGTA
CCTCATCCTCATCCTATCACCACCAGCAGCAGCAGAAGCAGCAGCAGCAG
TCCCTCTTCCTCCCTGGCCACTGGGATAATGGCACGAGCGGCGGTAGCTT
CAAAATGACGGCCTTCACACCGGCCTCTCACACCTACATCCCCCCCTCCT
TCGCAGCAGCAATCGCAGCAACAGCAACAACAACAGCAATATCCAAGTGT
ATGGCTCCCTTCTTCTTGCTCTTCCTCACCCTCGTCCTGCCAGCAGCAAC
AACAGCAATTGCAGCAGCAAATTATGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACACCTACTGGCTCAGCAGCAACAGCA
GCAGCAGCATTCTTCCACTCACTCAGCCTTCCCCTCCCATTCCACCATCA
ACTATTCCTCTTTCCCTTCCTCGTCCTGCTGCTCCACTGTCCCTGCTGCC
GCTGTTGCTCCTCTTTCCCCCTTCCAGAAAAAGGAAGCACGCAAGCGCAA
GGCAGACGGGAAAAGAGGGGATTTAAGCGGGGTCAGAAGCAGCTGTAGTA
GCATCAATAGCATCGGCGAGGTGCCCACGGCCTCCGCCAGCTCCTCCCAC
CCCCTTTTCCCCACTGCTATGTCCTCCTCCTCCTCCACCACCATCACCAT
TTCGCCCAAGAAAGAAGCAAAAGAAGAAGACGATGAACGACAACAGCAGC
AAGCAAGGCAAGGAGGAGGAATTGGGAAGGAGGGAGGAAAGCAGGACATG
CGTCACAAACTCAAGGGTTTAGAAGCAGACGTAAGGGCAGAAACAGAGGC
TTTACGTAGGATTAAATTAGTCCACGAAACTCTTGCCCAGTTGGTGACGA
CTAAAGCGAGGAACGACGAGGTGGAGGATGGGAAAATAGTGCATGAGCTC
TTGAAGCAAAATGCGGCCATCCGGGTTTTGATCGACCGAGTGCGGAAAAT
GAAGGGGGAGGGAAAGATGGGAGGAGGGAGGGAGGGAGGGCACGACCCAG
CAGCCATGTTGAAAGTGACGGATGAGGTGTTGTCGATTTTGAATTTGCCG
CCGCCGGCACTGCCACCGAATGTGGTGCGGATTGCGATGGCGGAGGGAGA
GAGGAGGGGGTAG

protein sequence of jgi.p|Nanoce1779_2|628364

>mRNA_2240-protein ID=mRNA_2240-protein|Name=jgi.p|Nanoce1779_2|628364|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MQQQQQQQQQQQQQQQQHLLAQQQQQQQHSSTHSAFPSHSTINYSSFPSS
SCCSTVPAAAVAPLSPFQKKEARKRKADGKRGDLSGVRSSCSSINSIGEV
PTASASSSHPLFPTAMSSSSSTTITISPKKEAKEEDDERQQQQARQGGGI
GKEGGKQDMRHKLKGLEADVRAETEALRRIKLVHETLAQLVTTKARNDEV
EDGKIVHELLKQNAAIRVLIDRVRKMKGEGKMGGGREGGHDPAAMLKVTD
EVLSILNLPPPALPPNVVRIAMAEGERRG*

mRNA from alignment at scaffold_4:1150122..1151434+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2240 ID=mRNA_2240|Name=jgi.p|Nanoce1779_2|628364|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp|location=Sequence derived from alignment at scaffold_4:1150122..1151434+ (Nannochloropsis oceanica)
CATGCCTCGTCCTCCCACTGGACATGGCGCAGTTCCCTTCTGGCAGTACT
CCCCCCCGCCTCCCTACCCTACCTCCTCATCCTCCTCCACCTCCTCCTCT
TGTCCTTCCTCCTCCTCCTTTTCTGCGACTCGTGGGCAGGACCAGCCGCC
ACAGCAAGACCAGCAACATCCGAGCGTTTGGCTTCCTTCCTCTACCTGTA
CCTCATCCTCATCCTATCACCACCAGCAGCAGCAGAAGCAGCAGCAGCAG
TCCCTCTTCCTCCCTGGCCACTGGGATAATGGCACGAGCGGCGGTAGCTT
CAAAATGACGGCCTTCACACCGGCCTCTCACACCTACATCCCCCCCTCCT
TCGCAGCAGCAATCGCAGCAACAGCAACAACAACAGCAATATCCAAGTGT
ATGGCTCCCTTCTTCTTGCTCTTCCTCACCCTCGTCCTGCCAGCAGCAAC
AACAGCAATTGCAGCAGCAAATTATGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACACCTACTGGCTCAGCAGCAACAGCA
GCAGCAGCATTCTTCCACTCACTCAGCCTTCCCCTCCCATTCCACCATCA
ACTATTCCTCTTTCCCTTCCTCGTCCTGCTGCTCCACTGTCCCTGCTGCC
GCTGTTGCTCCTCTTTCCCCCTTCCAGAAAAAGGAAGCACGCAAGCGCAA
GGCAGACGGGAAAAGAGGGGATTTAAGCGGGGTCAGAAGCAGCTGTAGTA
GCATCAATAGCATCGGCGAGGTGCCCACGGCCTCCGCCAGCTCCTCCCAC
CCCCTTTTCCCCACTGCTATGTCCTCCTCCTCCTCCACCACCATCACCAT
TTCGCCCAAGAAAGAAGCAAAAGAAGAAGACGATGAACGACAACAGCAGC
AAGCAAGGCAAGGAGGAGGAATTGGGAAGGAGGGAGGAAAGCAGGACATG
CGTCACAAACTCAAGGGTTTAGAAGCAGACGTAAGGGCAGAAACAGAGGC
TTTACGTAGGATTAAATTAGTCCACGAAACTCTTGCCCAGTTGGTGACGA
CTAAAGCGAGGAACGACGAGGTGGAGGATGGGAAAATAGTGCATGAGCTC
TTGAAGCAAAATGCGGCCATCCGGGTTTTGATCGACCGAGTGCGGAAAAT
GAAGGGGGAGGGAAAGATGGGAGGAGGGAGGGAGGGAGGGCACGACCCAG
CAGCCATGTTGAAAGTGACGGATGAGGTGTTGTCGATTTTGAATTTGCCG
CCGCCGGCACTGCCACCGAATGTGGTGCGGATTGCGATGGCGGAGGGAGA
GAGGAGGGGGTAG

Coding sequence (CDS) from alignment at scaffold_4:1150122..1151434+

>mRNA_2240 ID=mRNA_2240|Name=jgi.p|Nanoce1779_2|628364|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_4:1150122..1151434+ (Nannochloropsis oceanica)
ATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACACCTACTGGCTCAGCAGCAACAGCAGCAGCAGCATTCTTCCACTCACT
CAGCCTTCCCCTCCCATTCCACCATCAACTATTCCTCTTTCCCTTCCTCG
TCCTGCTGCTCCACTGTCCCTGCTGCCGCTGTTGCTCCTCTTTCCCCCTT
CCAGAAAAAGGAAGCACGCAAGCGCAAGGCAGACGGGAAAAGAGGGGATT
TAAGCGGGGTCAGAAGCAGCTGTAGTAGCATCAATAGCATCGGCGAGGTG
CCCACGGCCTCCGCCAGCTCCTCCCACCCCCTTTTCCCCACTGCTATGTC
CTCCTCCTCCTCCACCACCATCACCATTTCGCCCAAGAAAGAAGCAAAAG
AAGAAGACGATGAACGACAACAGCAGCAAGCAAGGCAAGGAGGAGGAATT
GGGAAGGAGGGAGGAAAGCAGGACATGCGTCACAAACTCAAGGGTTTAGA
AGCAGACGTAAGGGCAGAAACAGAGGCTTTACGTAGGATTAAATTAGTCC
ACGAAACTCTTGCCCAGTTGGTGACGACTAAAGCGAGGAACGACGAGGTG
GAGGATGGGAAAATAGTGCATGAGCTCTTGAAGCAAAATGCGGCCATCCG
GGTTTTGATCGACCGAGTGCGGAAAATGAAGGGGGAGGGAAAGATGGGAG
GAGGGAGGGAGGGAGGGCACGACCCAGCAGCCATGTTGAAAGTGACGGAT
GAGGTGTTGTCGATTTTGAATTTGCCGCCGCCGGCACTGCCACCGAATGT
GGTGCGGATTGCGATGGCGGAGGGAGAGAGGAGGGGGTAG

Synonyms

Publications