jgi.p|Nanoce1779_2|310264, mRNA_10130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|310264
Unique Name	mRNA_10130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1630
Alignment location	scaffold_43:87619..89248 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	310350
Track	FilteredModels2
ProteinId	310264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:87619..89248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|310264	gene_10130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|310264	mRNA_10130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10130	CDS_10130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:87619..89248+
coding sequence from alignment at scaffold_43:87619..89248+

mRNA sequence

>mRNA_10130 ID=mRNA_10130|Name=jgi.p|Nanoce1779_2|310264|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp
TTTTTTTTATCTTGATTTTTTTTATACTTAATTTTTTCATCCCTTGCCGA
GTCTTAGCGCATCCTTTCCTTCCGCATCCGTTGCAGACATTGTACACGGT
GTATTTCGCCCTTTCTTTCAATCAGACGACAAATGCATATTGAAATCGTC
CTTAACTTCACGTGACATCACTTGTTTCTGTCGAGTCTCCCTCGAGGAAG
ACTATTGACTGACCTCATCCCCTTGTTACTCCTTCCTACACACAAAATAG
GGGGCCTGTGACCTACATCTAGGAGAATGCAACATCATCTTGTCCTCCCG
CATTTTCTGTCCATCCTTGCCCTCCTTTTATTACCGTCTCCAGGCCTCTG
TTTCCTCCTCCACCGGCCTTCCCAATCGTCCCCACAAACATTAGCACCAT
CACCACGCTACGCGCCTGCATCTTCAGTCCAGGCGTCCTCTCCCTTTTCC
TCTTCGTCTTCCTCCCTTTTTTCCTGGTCTTCTACCGCGGCACCGGATTT
TTTGGCGTTTGTCGATGCGGTCACCTGTGGCCCTGGCGGTGGCTGTTGGG
AAGGCACAGTCTGTCGCCTTTCCATGAAGGAGGAGGAGGAGGAAGGGAGG
GAGGAACGAAGAAAAGACGAGTCGTTGGATGTTCAAGTTTGCTTTGAGGA
AGTCATGCGGGCGTGCGGAGGGGCCATTGCAGGAGTAAGAGAAAAAATAC
TCTTTTCCTCCTCCTCTTCTTCCTGCTCAGGACAGATCTCGTCCTTTTAT
GGCATGCATGAGCATAACAGAGGAGAAGACGGCTTCCTCTTCCTTCCCGA
CGGTGGTTTCCAGCATGGGCCGGATCGCCTGAAGGTAGGAGGGGGACAAG
GAGGAAAGGAAAGAAAGGAGGAGGAGGAGGAAATGGAAGTTGTGACGAGC
TTGGCATCGGAGGATGGGAAGGAAAGGTTGCGGGTGAGGGTGAGGTTGGG
GAGGAGGGAGGAAAGGGAGAAGCTTCGCGTCACGGACGTCAGCTGGTCCC
GAGAGCGCTCCAAAGGCAAAGATAGTAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCCCTTCCTCCTTCGCGTCCGTATTCTCCCCCTC
CTTCTTTCCCTCCCTCCTGAAGGAAGGGAAGGTGTTGAGAGCGACAAGAG
GAAATGGGCCGCCTCCCCCACAGTGGCAGAGGGCACGGCTGAAGTGGGAG
GAGAGTGGGGGGGAGGGATGGATGGAGGAAGGGAAGGAGAGAGGAGGAGA
AGGTCGATTGGCGAGCGAGGAAGGGGTGTGGGTGTTGGTGGAAGAGGAGG
GAGAGAGGGAAGGAGCGGTAAGGATCGAGGTTGGAGGGGTGGTGGGGAAG
AAGCTGGAGATATGGAGAAGGGTGTATGATGAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAGGGGCATTGCGGGAAGTAAGCATCTTCCGCTCTGATTTCC
TGAGAAAGGAGTGACAAGAAGGGATGAAGGAGAATGGGCTGTAAAATTAT
TAGTTCATAAAGTATTGCATAACATTTATGGTCATACTTACACCTATACC
TCTACTCATTCTTATGCTTACTCCTAAGCTTATGCTGACACTAAGCTCGA
CTTAGCGGAGAAGTGACGAGGCGCTTTAGA

protein sequence of jgi.p|Nanoce1779_2|310264

>mRNA_10130-protein ID=mRNA_10130-protein|Name=jgi.p|Nanoce1779_2|310264|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MQHHLVLPHFLSILALLLLPSPGLCFLLHRPSQSSPQTLAPSPRYAPASS
VQASSPFSSSSSSLFSWSSTAAPDFLAFVDAVTCGPGGGCWEGTVCRLSM
KEEEEEGREERRKDESLDVQVCFEEVMRACGGAIAGVREKILFSSSSSSC
SGQISSFYGMHEHNRGEDGFLFLPDGGFQHGPDRLKVGGGQGGKERKEEE
EEMEVVTSLASEDGKERLRVRVRLGRREEREKLRVTDVSWSRERSKGKDS
SSSSSSSSSSSSSSPSSFASVFSPSFFPSLLKEGKVLRATRGNGPPPPQW
QRARLKWEESGGEGWMEEGKERGGEGRLASEEGVWVLVEEEGEREGAVRI
EVGGVVGKKLEIWRRVYDEGRREGGREGGALREVSIFRSDFLRKE*

mRNA from alignment at scaffold_43:87619..89248+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10130 ID=mRNA_10130|Name=jgi.p|Nanoce1779_2|310264|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp|location=Sequence derived from alignment at scaffold_43:87619..89248+ (Nannochloropsis oceanica)
TTTTTTTTATCTTGATTTTTTTTATACTTAATTTTTTCATCCCTTGCCGA
GTCTTAGCGCATCCTTTCCTTCCGCATCCGTTGCAGACATTGTACACGGT
GTATTTCGCCCTTTCTTTCAATCAGACGACAAATGCATATTGAAATCGTC
CTTAACTTCACGTGACATCACTTGTTTCTGTCGAGTCTCCCTCGAGGAAG
ACTATTGACTGACCTCATCCCCTTGTTACTCCTTCCTACACACAAAATAG
GGGGCCTGTGACCTACATCTAGGAGAATGCAACATCATCTTGTCCTCCCG
CATTTTCTGTCCATCCTTGCCCTCCTTTTATTACCGTCTCCAGGCCTCTG
TTTCCTCCTCCACCGGCCTTCCCAATCGTCCCCACAAACATTAGCACCAT
CACCACGCTACGCGCCTGCATCTTCAGTCCAGGCGTCCTCTCCCTTTTCC
TCTTCGTCTTCCTCCCTTTTTTCCTGGTCTTCTACCGCGGCACCGGATTT
TTTGGCGTTTGTCGATGCGGTCACCTGTGGCCCTGGCGGTGGCTGTTGGG
AAGGCACAGTCTGTCGCCTTTCCATGAAGGAGGAGGAGGAGGAAGGGAGG
GAGGAACGAAGAAAAGACGAGTCGTTGGATGTTCAAGTTTGCTTTGAGGA
AGTCATGCGGGCGTGCGGAGGGGCCATTGCAGGAGTAAGAGAAAAAATAC
TCTTTTCCTCCTCCTCTTCTTCCTGCTCAGGACAGATCTCGTCCTTTTAT
GGCATGCATGAGCATAACAGAGGAGAAGACGGCTTCCTCTTCCTTCCCGA
CGGTGGTTTCCAGCATGGGCCGGATCGCCTGAAGGTAGGAGGGGGACAAG
GAGGAAAGGAAAGAAAGGAGGAGGAGGAGGAAATGGAAGTTGTGACGAGC
TTGGCATCGGAGGATGGGAAGGAAAGGTTGCGGGTGAGGGTGAGGTTGGG
GAGGAGGGAGGAAAGGGAGAAGCTTCGCGTCACGGACGTCAGCTGGTCCC
GAGAGCGCTCCAAAGGCAAAGATAGTAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCCCTTCCTCCTTCGCGTCCGTATTCTCCCCCTC
CTTCTTTCCCTCCCTCCTGAAGGAAGGGAAGGTGTTGAGAGCGACAAGAG
GAAATGGGCCGCCTCCCCCACAGTGGCAGAGGGCACGGCTGAAGTGGGAG
GAGAGTGGGGGGGAGGGATGGATGGAGGAAGGGAAGGAGAGAGGAGGAGA
AGGTCGATTGGCGAGCGAGGAAGGGGTGTGGGTGTTGGTGGAAGAGGAGG
GAGAGAGGGAAGGAGCGGTAAGGATCGAGGTTGGAGGGGTGGTGGGGAAG
AAGCTGGAGATATGGAGAAGGGTGTATGATGAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAGGGGCATTGCGGGAAGTAAGCATCTTCCGCTCTGATTTCC
TGAGAAAGGAGTGACAAGAAGGGATGAAGGAGAATGGGCTGTAAAATTAT
TAGTTCATAAAGTATTGCATAACATTTATGGTCATACTTACACCTATACC
TCTACTCATTCTTATGCTTACTCCTAAGCTTATGCTGACACTAAGCTCGA
CTTAGCGGAGAAGTGACGAGGCGCTTTAGA

Coding sequence (CDS) from alignment at scaffold_43:87619..89248+

>mRNA_10130 ID=mRNA_10130|Name=jgi.p|Nanoce1779_2|310264|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_43:87619..89248+ (Nannochloropsis oceanica)
ATGCAACATCATCTTGTCCTCCCGCATTTTCTGTCCATCCTTGCCCTCCT
TTTATTACCGTCTCCAGGCCTCTGTTTCCTCCTCCACCGGCCTTCCCAAT
CGTCCCCACAAACATTAGCACCATCACCACGCTACGCGCCTGCATCTTCA
GTCCAGGCGTCCTCTCCCTTTTCCTCTTCGTCTTCCTCCCTTTTTTCCTG
GTCTTCTACCGCGGCACCGGATTTTTTGGCGTTTGTCGATGCGGTCACCT
GTGGCCCTGGCGGTGGCTGTTGGGAAGGCACAGTCTGTCGCCTTTCCATG
AAGGAGGAGGAGGAGGAAGGGAGGGAGGAACGAAGAAAAGACGAGTCGTT
GGATGTTCAAGTTTGCTTTGAGGAAGTCATGCGGGCGTGCGGAGGGGCCA
TTGCAGGAGTAAGAGAAAAAATACTCTTTTCCTCCTCCTCTTCTTCCTGC
TCAGGACAGATCTCGTCCTTTTATGGCATGCATGAGCATAACAGAGGAGA
AGACGGCTTCCTCTTCCTTCCCGACGGTGGTTTCCAGCATGGGCCGGATC
GCCTGAAGGTAGGAGGGGGACAAGGAGGAAAGGAAAGAAAGGAGGAGGAG
GAGGAAATGGAAGTTGTGACGAGCTTGGCATCGGAGGATGGGAAGGAAAG
GTTGCGGGTGAGGGTGAGGTTGGGGAGGAGGGAGGAAAGGGAGAAGCTTC
GCGTCACGGACGTCAGCTGGTCCCGAGAGCGCTCCAAAGGCAAAGATAGT
AGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTTCCTC
CTTCGCGTCCGTATTCTCCCCCTCCTTCTTTCCCTCCCTCCTGAAGGAAG
GGAAGGTGTTGAGAGCGACAAGAGGAAATGGGCCGCCTCCCCCACAGTGG
CAGAGGGCACGGCTGAAGTGGGAGGAGAGTGGGGGGGAGGGATGGATGGA
GGAAGGGAAGGAGAGAGGAGGAGAAGGTCGATTGGCGAGCGAGGAAGGGG
TGTGGGTGTTGGTGGAAGAGGAGGGAGAGAGGGAAGGAGCGGTAAGGATC
GAGGTTGGAGGGGTGGTGGGGAAGAAGCTGGAGATATGGAGAAGGGTGTA
TGATGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGGCATTGCGGGAAG
TAAGCATCTTCCGCTCTGATTTCCTGAGAAAGGAGTGA

Synonyms

Publications