jgi.p|Nanoce1779_2|609055, mRNA_9529 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609055
Unique NamemRNA_9529
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_44:21215..22029 -

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Properties
Property NameValue
TranscriptId609141
TrackFilteredModels2
ProteinId609055
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:21215..22029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609055gene_9529Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609055mRNA_9529-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9529CDS_9529Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9529 ID=mRNA_9529|Name=jgi.p|Nanoce1779_2|609055|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
ACAGGGTCAGCACAGCATCTGTACAATGGCCCGTCTCTCATTTGCCTGCC
TCGTCTCGGCCTGCCTGGCCTTGACAACCTGTGCGATGACCGAGCCGGCA
AGCAAGATTAAGTTCGATGATACGATCACACTTCCCGGGACAGCGGCAAG
TCTCAGCTTGGCGGGCGTGGGTGTGCGTGTCAAGAAGCTCGTGGGGCCCT
TGGCGGTCAAGGTGTACGGGGTGGGATTTTATGTGGACGAGAAGGCGGTG
GGCAAGAAGTTGAGCAAATTCAAGGGTCACAAGACGGGGAGCAAAGCACT
TTTTGATGCCTTGGAGTCTGACACGACGTACGATAAGATTGTGCTCCTGA
AGATGGCCCGCAAGGTGGGTGCCGCCACGCTGGTAAATGCGTTAGCGGAA
AGCGTAAAGCCTCGTTTGGGCAAGGGTAGTGATGCGGCTCTGCTTAAATT
TCAGGATGTGCTCCTTGCGGGGCTCAAAGGTGGGGAAGCCGAGACAGGGA
AGCAGTTCGGGTTTGGCATCCAGGGAGGCAATAAGTTGATCGTGACAATC
AATGGCAAAAAGCAGGGGGAGATCGCGAGTGGCCCTTTGGCACAGGCAAT
GCTGAAGACTTATTTGGATGATAATGCTGTGTCGAAGGACATGAAGGACT
CGGTGGCGCAAGGCATTTTGACCTGGATTAATGTGACCAAGTAAAACATA
CAAGGAGGAAGGAGAGACGGAGGACATGTGAAGCGGCGGGTGTGTGTGAT
TCGGTGCAAAGTGAATGGGGGGCAAGAAGAAGGGATCATCAAGAAGAAGG
GATCATCAAGAAGAA
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protein sequence of jgi.p|Nanoce1779_2|609055

>mRNA_9529-protein ID=mRNA_9529-protein|Name=jgi.p|Nanoce1779_2|609055|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MARLSFACLVSACLALTTCAMTEPASKIKFDDTITLPGTAASLSLAGVGV
RVKKLVGPLAVKVYGVGFYVDEKAVGKKLSKFKGHKTGSKALFDALESDT
TYDKIVLLKMARKVGAATLVNALAESVKPRLGKGSDAALLKFQDVLLAGL
KGGEAETGKQFGFGIQGGNKLIVTINGKKQGEIASGPLAQAMLKTYLDDN
AVSKDMKDSVAQGILTWINVTK*
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mRNA from alignment at scaffold_44:21215..22029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9529 ID=mRNA_9529|Name=jgi.p|Nanoce1779_2|609055|organism=Nannochloropsis oceanica|type=mRNA|length=815bp|location=Sequence derived from alignment at scaffold_44:21215..22029- (Nannochloropsis oceanica)
ACAGGGTCAGCACAGCATCTGTACAATGGCCCGTCTCTCATTTGCCTGCC
TCGTCTCGGCCTGCCTGGCCTTGACAACCTGTGCGATGACCGAGCCGGCA
AGCAAGATTAAGTTCGATGATACGATCACACTTCCCGGGACAGCGGCAAG
TCTCAGCTTGGCGGGCGTGGGTGTGCGTGTCAAGAAGCTCGTGGGGCCCT
TGGCGGTCAAGGTGTACGGGGTGGGATTTTATGTGGACGAGAAGGCGGTG
GGCAAGAAGTTGAGCAAATTCAAGGGTCACAAGACGGGGAGCAAAGCACT
TTTTGATGCCTTGGAGTCTGACACGACGTACGATAAGATTGTGCTCCTGA
AGATGGCCCGCAAGGTGGGTGCCGCCACGCTGGTAAATGCGTTAGCGGAA
AGCGTAAAGCCTCGTTTGGGCAAGGGTAGTGATGCGGCTCTGCTTAAATT
TCAGGATGTGCTCCTTGCGGGGCTCAAAGGTGGGGAAGCCGAGACAGGGA
AGCAGTTCGGGTTTGGCATCCAGGGAGGCAATAAGTTGATCGTGACAATC
AATGGCAAAAAGCAGGGGGAGATCGCGAGTGGCCCTTTGGCACAGGCAAT
GCTGAAGACTTATTTGGATGATAATGCTGTGTCGAAGGACATGAAGGACT
CGGTGGCGCAAGGCATTTTGACCTGGATTAATGTGACCAAGTAAAACATA
CAAGGAGGAAGGAGAGACGGAGGACATGTGAAGCGGCGGGTGTGTGTGAT
TCGGTGCAAAGTGAATGGGGGGCAAGAAGAAGGGATCATCAAGAAGAAGG
GATCATCAAGAAGAA
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Coding sequence (CDS) from alignment at scaffold_44:21215..22029-

>mRNA_9529 ID=mRNA_9529|Name=jgi.p|Nanoce1779_2|609055|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_44:21215..22029- (Nannochloropsis oceanica)
ATGGCCCGTCTCTCATTTGCCTGCCTCGTCTCGGCCTGCCTGGCCTTGAC
AACCTGTGCGATGACCGAGCCGGCAAGCAAGATTAAGTTCGATGATACGA
TCACACTTCCCGGGACAGCGGCAAGTCTCAGCTTGGCGGGCGTGGGTGTG
CGTGTCAAGAAGCTCGTGGGGCCCTTGGCGGTCAAGGTGTACGGGGTGGG
ATTTTATGTGGACGAGAAGGCGGTGGGCAAGAAGTTGAGCAAATTCAAGG
GTCACAAGACGGGGAGCAAAGCACTTTTTGATGCCTTGGAGTCTGACACG
ACGTACGATAAGATTGTGCTCCTGAAGATGGCCCGCAAGGTGGGTGCCGC
CACGCTGGTAAATGCGTTAGCGGAAAGCGTAAAGCCTCGTTTGGGCAAGG
GTAGTGATGCGGCTCTGCTTAAATTTCAGGATGTGCTCCTTGCGGGGCTC
AAAGGTGGGGAAGCCGAGACAGGGAAGCAGTTCGGGTTTGGCATCCAGGG
AGGCAATAAGTTGATCGTGACAATCAATGGCAAAAAGCAGGGGGAGATCG
CGAGTGGCCCTTTGGCACAGGCAATGCTGAAGACTTATTTGGATGATAAT
GCTGTGTCGAAGGACATGAAGGACTCGGTGGCGCAAGGCATTTTGACCTG
GATTAATGTGACCAAGTAA
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Synonyms
Publications