jgi.p|Nanoce1779_2|609190, mRNA_9569 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609190
Unique NamemRNA_9569
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length505
Alignment locationscaffold_44:118023..118527 +

Link to JBrowse

Properties
Property NameValue
TranscriptId609276
TrackFilteredModels2
ProteinId609190
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:118023..118527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609190gene_9569Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609190mRNA_9569-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9569CDS_9569Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9569 ID=mRNA_9569|Name=jgi.p|Nanoce1779_2|609190|organism=Nannochloropsis oceanica|type=mRNA|length=505bp
CTCCGTCTCCCAGGCCGGGACTTGTTCCCCCAAAATCTCTGACCACAAAT
GCTCTGCCTCTGCATGCCATCCCTCCTCCTTCTTCTTCATCTCCTCCTCC
TCCTCCTCTTCCTCCTCCTCTTCCTCCTGTCCCTCTTTTCCCTTTTCTCT
GTCCACCACCCTCCCCCTCCCTCCCTCACTCATCACTGCCTTGCGACAAT
ATTTTTTCAGTACAGGCAAGCCCAGGACAGAAACCAGCTCCAGTATCTCT
CTAAACACCTCCAGCCCGCCCTCCCCCCCACCAGCGTTTCCTCCCTCCCC
TGCGTGGAGAAGGGAGGGAGAGAGGGGCCGAAGGAAGAAGGGAAGGCACC
GACCGAGCGCGTGCTCGCAAGCCACCCGTAAACCCGCCACTAGACACTCG
TCGGCCAGCAGCAACAACTCTATGGTGGCTACTGCCGCTGCTGCTGCTGG
TATTGGGGCGGCGGTGGTGGCAGCAGTGGCGGCTCTTTCCTTTTCCTCAG
AGGGG
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protein sequence of jgi.p|Nanoce1779_2|609190

>mRNA_9569-protein ID=mRNA_9569-protein|Name=jgi.p|Nanoce1779_2|609190|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLCLCMPSLLLLLHLLLLLLFLLLFLLSLFSLFSVHHPPPPSLTHHCLAT
IFFQYRQAQDRNQLQYLSKHLQPALPPTSVSSLPCVEKGGREGPKEEGKA
PTERVLASHP*
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mRNA from alignment at scaffold_44:118023..118527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9569 ID=mRNA_9569|Name=jgi.p|Nanoce1779_2|609190|organism=Nannochloropsis oceanica|type=mRNA|length=505bp|location=Sequence derived from alignment at scaffold_44:118023..118527+ (Nannochloropsis oceanica)
CTCCGTCTCCCAGGCCGGGACTTGTTCCCCCAAAATCTCTGACCACAAAT
GCTCTGCCTCTGCATGCCATCCCTCCTCCTTCTTCTTCATCTCCTCCTCC
TCCTCCTCTTCCTCCTCCTCTTCCTCCTGTCCCTCTTTTCCCTTTTCTCT
GTCCACCACCCTCCCCCTCCCTCCCTCACTCATCACTGCCTTGCGACAAT
ATTTTTTCAGTACAGGCAAGCCCAGGACAGAAACCAGCTCCAGTATCTCT
CTAAACACCTCCAGCCCGCCCTCCCCCCCACCAGCGTTTCCTCCCTCCCC
TGCGTGGAGAAGGGAGGGAGAGAGGGGCCGAAGGAAGAAGGGAAGGCACC
GACCGAGCGCGTGCTCGCAAGCCACCCGTAAACCCGCCACTAGACACTCG
TCGGCCAGCAGCAACAACTCTATGGTGGCTACTGCCGCTGCTGCTGCTGG
TATTGGGGCGGCGGTGGTGGCAGCAGTGGCGGCTCTTTCCTTTTCCTCAG
AGGGG
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Coding sequence (CDS) from alignment at scaffold_44:118023..118527+

>mRNA_9569 ID=mRNA_9569|Name=jgi.p|Nanoce1779_2|609190|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_44:118023..118527+ (Nannochloropsis oceanica)
ATGCTCTGCCTCTGCATGCCATCCCTCCTCCTTCTTCTTCATCTCCTCCT
CCTCCTCCTCTTCCTCCTCCTCTTCCTCCTGTCCCTCTTTTCCCTTTTCT
CTGTCCACCACCCTCCCCCTCCCTCCCTCACTCATCACTGCCTTGCGACA
ATATTTTTTCAGTACAGGCAAGCCCAGGACAGAAACCAGCTCCAGTATCT
CTCTAAACACCTCCAGCCCGCCCTCCCCCCCACCAGCGTTTCCTCCCTCC
CCTGCGTGGAGAAGGGAGGGAGAGAGGGGCCGAAGGAAGAAGGGAAGGCA
CCGACCGAGCGCGTGCTCGCAAGCCACCCGTAA
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Synonyms
Publications