jgi.p|Nanoce1779_2|580200, mRNA_2390 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580200
Unique Name	mRNA_2390
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1564
Alignment location	scaffold_5:223119..224682 +

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Properties


Property Name	Value
TranscriptId	580286
Track	FilteredModels2
ProteinId	580200

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:223119..224682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580200	gene_2390	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580200	mRNA_2390-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2390	CDS_2390	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:223119..224682+
coding sequence from alignment at scaffold_5:223119..224682+

mRNA sequence

>mRNA_2390 ID=mRNA_2390|Name=jgi.p|Nanoce1779_2|580200|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp
ACAGATATCAAAATGGTGAAGCGGTGCTGGATGCTGCCTACGGCAGCGGC
TGTCGTCGTTTCTACCTTCTTGCTGAGCAGCACTCCCGCTCCCGCGGAAG
CATTTCTCCCGCCCGTTCCGGCCCCCCCCGCTCATTTTGCTGCCATTCCC
TCTTCTATCTCCGTCCTCTCTTCCCGTGCTCGGCTTGGGGCGGTGCAAAT
GATCAGACCGGCGGGTTTGCAATCGTCGTTGTTGAATCGGTTTCGGTCGA
AGCCTAGTGCGTCGCCCGACAGGCCCGGTGTCGGACCACCACGGAACAAC
AAGGATGAGGACGAGAAGACCAAGAAGCAAGCGGCAGCGACAAGTAGCAG
CGTTCGCGGGTCGAGCATTGCAGGCAGTATGAAAGGCAGTGACGAAGCCG
GTCAAATGGTTGATAAGGCTGCAGGGCTGGGGCAAAAGCTAAGTCGGTTC
ACTGCGGCGGTCCTTGAGGAAGAGGGTGACGAGGAGAGCGCGAGGGTTTT
GAAAACTATGAAGGGCATCCCAGACAATTTTCTCAAGAGCTCCATCCCTG
CTGACGAGGAAAATATACGAGGAGCTTCGGCTGTTGTGGGTGCACTCGCG
GGCTTTGTCTTGGGTGGGCCTCTCTTGGCCCTGATAGGGGCGTCGTGGAC
GAGTTATTCCTGCACGGTCGCTCAGTCAGACGCGGGAGAAGCAGCGCGAG
GCACAGGGCAATGGGCGCTAAACTTGCACAATTTCGTGGCGAAGGTCAAT
CGGAAAAAATCCTTCGTCCAGAAGTTGTCTTTGTCATTGGGTGGATTGTA
CCGGCGGTTTAGAAAGGAGGTGGCTCCCGAGGCAAGTGTACTTGACAAGG
CTGAGGCTTCCTTGCAATCGACCCTGGATTTCACGGGAAGGATCAGCCAG
GAATTTGATTTGCCAGGCGTGGTGGGAAAGGCTGTCGTGAAGACGGGAGA
GTTGAGTGTGGTGGCGGTGAAGAGCTTAGTGAAATACAATGACGAGAATA
AGGTGACGGATAAGTTGTGGGCCTGGGTGCGGAAGGAGGTGTTGAAGGAG
AAAAAGTAGGGATAAAAGGAAAAAGCGGAGGAAAGAGCTCTATGAGTGCA
TGTGAGAAGATGTGCCTGGTCATTTGTGTGTATGTTGTCCTTTGCCCTTG
TGGGGTTGGGTGTAGCTAACATTTCGGGCGTGCCCCATGGACGGGTGTCA
AGGGGAGGAGGGGGAGGAGGAGAAGAAAATGGAAGCAAAGGATCACTTGA
ATAATTGAAGATGCGCGAAATAGGAAATTGGGGGCAACCTTAAAGCAGAA
AGAAGAGAAGAAGAGAAGGAGAGAGAAAAAGAATCATTCTTTCTAACAGC
TCCAGACGTTTTAATGAACGGCATGGGACTCATGCGTGCGGAGGGGCATG
GGAAGAACAAGAGGAATTCAGGCTGAGATAAGGCAGAAGACCACGCGTTC
AACCAAAGAGATATTTTTTAGAGACGAGAAAGCAGAAAAGGGAAGAAGAA
GATGAAAGAATGCACACTAAAATTTAAGTAGGAAAAAACAAGAAGAACAA
TATTCATGGGCTTA

protein sequence of jgi.p|Nanoce1779_2|580200

>mRNA_2390-protein ID=mRNA_2390-protein|Name=jgi.p|Nanoce1779_2|580200|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MVKRCWMLPTAAAVVVSTFLLSSTPAPAEAFLPPVPAPPAHFAAIPSSIS
VLSSRARLGAVQMIRPAGLQSSLLNRFRSKPSASPDRPGVGPPRNNKDED
EKTKKQAAATSSSVRGSSIAGSMKGSDEAGQMVDKAAGLGQKLSRFTAAV
LEEEGDEESARVLKTMKGIPDNFLKSSIPADEENIRGASAVVGALAGFVL
GGPLLALIGASWTSYSCTVAQSDAGEAARGTGQWALNLHNFVAKVNRKKS
FVQKLSLSLGGLYRRFRKEVAPEASVLDKAEASLQSTLDFTGRISQEFDL
PGVVGKAVVKTGELSVVAVKSLVKYNDENKVTDKLWAWVRKEVLKEKK*

mRNA from alignment at scaffold_5:223119..224682+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2390 ID=mRNA_2390|Name=jgi.p|Nanoce1779_2|580200|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at scaffold_5:223119..224682+ (Nannochloropsis oceanica)
ACAGATATCAAAATGGTGAAGCGGTGCTGGATGCTGCCTACGGCAGCGGC
TGTCGTCGTTTCTACCTTCTTGCTGAGCAGCACTCCCGCTCCCGCGGAAG
CATTTCTCCCGCCCGTTCCGGCCCCCCCCGCTCATTTTGCTGCCATTCCC
TCTTCTATCTCCGTCCTCTCTTCCCGTGCTCGGCTTGGGGCGGTGCAAAT
GATCAGACCGGCGGGTTTGCAATCGTCGTTGTTGAATCGGTTTCGGTCGA
AGCCTAGTGCGTCGCCCGACAGGCCCGGTGTCGGACCACCACGGAACAAC
AAGGATGAGGACGAGAAGACCAAGAAGCAAGCGGCAGCGACAAGTAGCAG
CGTTCGCGGGTCGAGCATTGCAGGCAGTATGAAAGGCAGTGACGAAGCCG
GTCAAATGGTTGATAAGGCTGCAGGGCTGGGGCAAAAGCTAAGTCGGTTC
ACTGCGGCGGTCCTTGAGGAAGAGGGTGACGAGGAGAGCGCGAGGGTTTT
GAAAACTATGAAGGGCATCCCAGACAATTTTCTCAAGAGCTCCATCCCTG
CTGACGAGGAAAATATACGAGGAGCTTCGGCTGTTGTGGGTGCACTCGCG
GGCTTTGTCTTGGGTGGGCCTCTCTTGGCCCTGATAGGGGCGTCGTGGAC
GAGTTATTCCTGCACGGTCGCTCAGTCAGACGCGGGAGAAGCAGCGCGAG
GCACAGGGCAATGGGCGCTAAACTTGCACAATTTCGTGGCGAAGGTCAAT
CGGAAAAAATCCTTCGTCCAGAAGTTGTCTTTGTCATTGGGTGGATTGTA
CCGGCGGTTTAGAAAGGAGGTGGCTCCCGAGGCAAGTGTACTTGACAAGG
CTGAGGCTTCCTTGCAATCGACCCTGGATTTCACGGGAAGGATCAGCCAG
GAATTTGATTTGCCAGGCGTGGTGGGAAAGGCTGTCGTGAAGACGGGAGA
GTTGAGTGTGGTGGCGGTGAAGAGCTTAGTGAAATACAATGACGAGAATA
AGGTGACGGATAAGTTGTGGGCCTGGGTGCGGAAGGAGGTGTTGAAGGAG
AAAAAGTAGGGATAAAAGGAAAAAGCGGAGGAAAGAGCTCTATGAGTGCA
TGTGAGAAGATGTGCCTGGTCATTTGTGTGTATGTTGTCCTTTGCCCTTG
TGGGGTTGGGTGTAGCTAACATTTCGGGCGTGCCCCATGGACGGGTGTCA
AGGGGAGGAGGGGGAGGAGGAGAAGAAAATGGAAGCAAAGGATCACTTGA
ATAATTGAAGATGCGCGAAATAGGAAATTGGGGGCAACCTTAAAGCAGAA
AGAAGAGAAGAAGAGAAGGAGAGAGAAAAAGAATCATTCTTTCTAACAGC
TCCAGACGTTTTAATGAACGGCATGGGACTCATGCGTGCGGAGGGGCATG
GGAAGAACAAGAGGAATTCAGGCTGAGATAAGGCAGAAGACCACGCGTTC
AACCAAAGAGATATTTTTTAGAGACGAGAAAGCAGAAAAGGGAAGAAGAA
GATGAAAGAATGCACACTAAAATTTAAGTAGGAAAAAACAAGAAGAACAA
TATTCATGGGCTTA

Coding sequence (CDS) from alignment at scaffold_5:223119..224682+

>mRNA_2390 ID=mRNA_2390|Name=jgi.p|Nanoce1779_2|580200|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_5:223119..224682+ (Nannochloropsis oceanica)
ATGGTGAAGCGGTGCTGGATGCTGCCTACGGCAGCGGCTGTCGTCGTTTC
TACCTTCTTGCTGAGCAGCACTCCCGCTCCCGCGGAAGCATTTCTCCCGC
CCGTTCCGGCCCCCCCCGCTCATTTTGCTGCCATTCCCTCTTCTATCTCC
GTCCTCTCTTCCCGTGCTCGGCTTGGGGCGGTGCAAATGATCAGACCGGC
GGGTTTGCAATCGTCGTTGTTGAATCGGTTTCGGTCGAAGCCTAGTGCGT
CGCCCGACAGGCCCGGTGTCGGACCACCACGGAACAACAAGGATGAGGAC
GAGAAGACCAAGAAGCAAGCGGCAGCGACAAGTAGCAGCGTTCGCGGGTC
GAGCATTGCAGGCAGTATGAAAGGCAGTGACGAAGCCGGTCAAATGGTTG
ATAAGGCTGCAGGGCTGGGGCAAAAGCTAAGTCGGTTCACTGCGGCGGTC
CTTGAGGAAGAGGGTGACGAGGAGAGCGCGAGGGTTTTGAAAACTATGAA
GGGCATCCCAGACAATTTTCTCAAGAGCTCCATCCCTGCTGACGAGGAAA
ATATACGAGGAGCTTCGGCTGTTGTGGGTGCACTCGCGGGCTTTGTCTTG
GGTGGGCCTCTCTTGGCCCTGATAGGGGCGTCGTGGACGAGTTATTCCTG
CACGGTCGCTCAGTCAGACGCGGGAGAAGCAGCGCGAGGCACAGGGCAAT
GGGCGCTAAACTTGCACAATTTCGTGGCGAAGGTCAATCGGAAAAAATCC
TTCGTCCAGAAGTTGTCTTTGTCATTGGGTGGATTGTACCGGCGGTTTAG
AAAGGAGGTGGCTCCCGAGGCAAGTGTACTTGACAAGGCTGAGGCTTCCT
TGCAATCGACCCTGGATTTCACGGGAAGGATCAGCCAGGAATTTGATTTG
CCAGGCGTGGTGGGAAAGGCTGTCGTGAAGACGGGAGAGTTGAGTGTGGT
GGCGGTGAAGAGCTTAGTGAAATACAATGACGAGAATAAGGTGACGGATA
AGTTGTGGGCCTGGGTGCGGAAGGAGGTGTTGAAGGAGAAAAAGTAG

Synonyms

Publications