jgi.p|Nanoce1779_2|344809, mRNA_10487 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|344809
Unique NamemRNA_10487
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1143
Alignment locationscaffold_52:66582..67724 +

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Properties
Property NameValue
TranscriptId344895
TrackFilteredModels2
ProteinId344809
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:66582..67724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344809gene_10487Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344809mRNA_10487-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10487CDS_10487Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10487 ID=mRNA_10487|Name=jgi.p|Nanoce1779_2|344809|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
CGTCCACGGTCTTTGTTTTGTAATAATCTACATCCCCTGTCTTCATTCTA
AAGTCTCATTAATACAGTAATACTCACCCATTTTCTTGGTCTTCTAAAAC
AGAATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGT
TTCCTCACCGATGGTTATGATCAGGGTTTGGATGGTTTCTATGGCAATGA
TCGCTGGCGTCATTTTAATAGCATTCATAACCAAATATCCGAATGAAGCG
TTCTACCTTGGTGATGAAGGTCGCATTCGCCAAGCGACTCCTCCTTCACG
TGCTCCAGTCCATACCAAGCTTGTGTTTGTGACGGCCTGGATCGATCTGG
GACCCGAACATACGGAAAAGACGCCGGCTTCGAGGCTAGAACACTTTCAA
AGACTGGCTACAAGCGGTATTTCTTTGTTTGTATTTGCCAGCCCTACTTA
TATTGCTATCATGGAGGAAGTCCGGACCCAGTTCCCCAACATTGTCGGGC
TACAGTCTGTGGAAATGGAGGACCTTCAGTCAGTGCAAACCATTAGGTCT
TTTACTGACTTGAGACTCCCTACCGTTTTGACCAAGATAAAGGACACGCA
CGGCTATCTTGAGCTCATGCTAGCAAAAATCGACTTCGTCTACCAAGCTC
TCGCTTATACGGACGCAACCCACCTTGCATGGATAGACTTTAGTATAGCC
CATGTATTTGATGATTCAGTTAATGCTCTGGAAGCATTACAAGACTTGCA
GCAGAGGGATCTCGTGCCTTCCCTTCTTACATTCCCTGTTATCTGGGATC
GCTCCGGTATCAATATGGAGGAACTGATCCAACGAGTCAACTGGCGATTT
GCCGGGAGTTTATTTATGGGCGATAGAAGATCTTTGGAACAGTGGTATAA
CTTGTGCTCCGACACCCTCAAGTTATTCCTTTCCCAGACTCAAACGCTTG
TGTGGGAGGTAAATTTCTGGGCATGGCTTGAAAATGTCTATCCTAACTCA
TTTCACCCGCAGGTGTACACATCAGATCATGACAACAGTCTCGTAGCAAT
CCCGCCCACTTTAGATCTTTTTTGACGATGGCAGAATGATTTGTACGTGG
GAAACAGAAACAAACAAACACACAAATGAGCTACAAGAGCAAT
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protein sequence of jgi.p|Nanoce1779_2|344809

>mRNA_10487-protein ID=mRNA_10487-protein|Name=jgi.p|Nanoce1779_2|344809|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPYSKYKEKYTHKRRVSSPMVMIRVWMVSMAMIAGVILIAFITKYPNEAF
YLGDEGRIRQATPPSRAPVHTKLVFVTAWIDLGPEHTEKTPASRLEHFQR
LATSGISLFVFASPTYIAIMEEVRTQFPNIVGLQSVEMEDLQSVQTIRSF
TDLRLPTVLTKIKDTHGYLELMLAKIDFVYQALAYTDATHLAWIDFSIAH
VFDDSVNALEALQDLQQRDLVPSLLTFPVIWDRSGINMEELIQRVNWRFA
GSLFMGDRRSLEQWYNLCSDTLKLFLSQTQTLVWEVNFWAWLENVYPNSF
HPQVYTSDHDNSLVAIPPTLDLF*
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mRNA from alignment at scaffold_52:66582..67724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10487 ID=mRNA_10487|Name=jgi.p|Nanoce1779_2|344809|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at scaffold_52:66582..67724+ (Nannochloropsis oceanica)
CGTCCACGGTCTTTGTTTTGTAATAATCTACATCCCCTGTCTTCATTCTA
AAGTCTCATTAATACAGTAATACTCACCCATTTTCTTGGTCTTCTAAAAC
AGAATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGT
TTCCTCACCGATGGTTATGATCAGGGTTTGGATGGTTTCTATGGCAATGA
TCGCTGGCGTCATTTTAATAGCATTCATAACCAAATATCCGAATGAAGCG
TTCTACCTTGGTGATGAAGGTCGCATTCGCCAAGCGACTCCTCCTTCACG
TGCTCCAGTCCATACCAAGCTTGTGTTTGTGACGGCCTGGATCGATCTGG
GACCCGAACATACGGAAAAGACGCCGGCTTCGAGGCTAGAACACTTTCAA
AGACTGGCTACAAGCGGTATTTCTTTGTTTGTATTTGCCAGCCCTACTTA
TATTGCTATCATGGAGGAAGTCCGGACCCAGTTCCCCAACATTGTCGGGC
TACAGTCTGTGGAAATGGAGGACCTTCAGTCAGTGCAAACCATTAGGTCT
TTTACTGACTTGAGACTCCCTACCGTTTTGACCAAGATAAAGGACACGCA
CGGCTATCTTGAGCTCATGCTAGCAAAAATCGACTTCGTCTACCAAGCTC
TCGCTTATACGGACGCAACCCACCTTGCATGGATAGACTTTAGTATAGCC
CATGTATTTGATGATTCAGTTAATGCTCTGGAAGCATTACAAGACTTGCA
GCAGAGGGATCTCGTGCCTTCCCTTCTTACATTCCCTGTTATCTGGGATC
GCTCCGGTATCAATATGGAGGAACTGATCCAACGAGTCAACTGGCGATTT
GCCGGGAGTTTATTTATGGGCGATAGAAGATCTTTGGAACAGTGGTATAA
CTTGTGCTCCGACACCCTCAAGTTATTCCTTTCCCAGACTCAAACGCTTG
TGTGGGAGGTAAATTTCTGGGCATGGCTTGAAAATGTCTATCCTAACTCA
TTTCACCCGCAGGTGTACACATCAGATCATGACAACAGTCTCGTAGCAAT
CCCGCCCACTTTAGATCTTTTTTGACGATGGCAGAATGATTTGTACGTGG
GAAACAGAAACAAACAAACACACAAATGAGCTACAAGAGCAAT
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Coding sequence (CDS) from alignment at scaffold_52:66582..67724+

>mRNA_10487 ID=mRNA_10487|Name=jgi.p|Nanoce1779_2|344809|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_52:66582..67724+ (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGTTTC
CTCACCGATGGTTATGATCAGGGTTTGGATGGTTTCTATGGCAATGATCG
CTGGCGTCATTTTAATAGCATTCATAACCAAATATCCGAATGAAGCGTTC
TACCTTGGTGATGAAGGTCGCATTCGCCAAGCGACTCCTCCTTCACGTGC
TCCAGTCCATACCAAGCTTGTGTTTGTGACGGCCTGGATCGATCTGGGAC
CCGAACATACGGAAAAGACGCCGGCTTCGAGGCTAGAACACTTTCAAAGA
CTGGCTACAAGCGGTATTTCTTTGTTTGTATTTGCCAGCCCTACTTATAT
TGCTATCATGGAGGAAGTCCGGACCCAGTTCCCCAACATTGTCGGGCTAC
AGTCTGTGGAAATGGAGGACCTTCAGTCAGTGCAAACCATTAGGTCTTTT
ACTGACTTGAGACTCCCTACCGTTTTGACCAAGATAAAGGACACGCACGG
CTATCTTGAGCTCATGCTAGCAAAAATCGACTTCGTCTACCAAGCTCTCG
CTTATACGGACGCAACCCACCTTGCATGGATAGACTTTAGTATAGCCCAT
GTATTTGATGATTCAGTTAATGCTCTGGAAGCATTACAAGACTTGCAGCA
GAGGGATCTCGTGCCTTCCCTTCTTACATTCCCTGTTATCTGGGATCGCT
CCGGTATCAATATGGAGGAACTGATCCAACGAGTCAACTGGCGATTTGCC
GGGAGTTTATTTATGGGCGATAGAAGATCTTTGGAACAGTGGTATAACTT
GTGCTCCGACACCCTCAAGTTATTCCTTTCCCAGACTCAAACGCTTGTGT
GGGAGGTAAATTTCTGGGCATGGCTTGAAAATGTCTATCCTAACTCATTT
CACCCGCAGGTGTACACATCAGATCATGACAACAGTCTCGTAGCAATCCC
GCCCACTTTAGATCTTTTTTGA
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Synonyms
Publications