jgi.p|Nanoce1779_2|581950, mRNA_3383 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581950
Unique Name	mRNA_3383
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1585
Alignment location	scaffold_6:183956..185540 +

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Properties


Property Name	Value
TranscriptId	582036
Track	FilteredModels2
ProteinId	581950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:183956..185540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581950	gene_3383	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581950	mRNA_3383-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3383	CDS_3383	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:183956..185540+
coding sequence from alignment at scaffold_6:183956..185540+

mRNA sequence

>mRNA_3383 ID=mRNA_3383|Name=jgi.p|Nanoce1779_2|581950|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
GCAGGCGCGGCTGCATAGGATCAGGAGGAGGAAGAGGAGGACGAGGAGGA
GCAGGGGAGCAGGGGCGGGGAAGGGGAGGAGGCTTCGCCTGTCTAGGCGG
CGGCGGCCGTGAACGACCACATATAGAAGCAGGGCAATATCATTTCTCCA
ATCCGCAACATCACCAGTGGCAGACGCATCACACACAAGTGCGCGAACAC
CAACACCATCACCACCAACAGCATCAGCAGCAGCAGTCTAAGGACTTGCA
CGCATACTACCGTTTTGCCCAGCACTATTCCGCCCACCTCCGAGCTGGAA
CAAGGGATGCAGTCGTCAGTAGGAGAGGAAAAGGAAGAGGATGGTGGGAA
GGAGGTCCAGGTGGTGGAGGAGGAGTTTCATCGCTACACACACCCAGCGG
AAGAAGCAGCAGCAGCAGCGGCAGCCATCACCCTGCGTACCCTCCCCGGA
ACGGCCTTCCCTCGTTCCACCGCCCCTGGATCAGGCCCAGCACCCGCCCT
TCCCCTTCTTCCTCTCATCCCTTGCCCCCTTCTTCGAGCTCGGGCTTTAC
TCTGCTTTCGTGGAATGTGCTGGCCTCCAGTCTAGTGGATCGGTCTTTCT
TGGGGTTCGCCACGGACGAGGAGCTGGCGTGGTGCGTCAGAGGACCCCGT
ATTCAGGCCGTGTTGAGAGAGATGGGAGCCGAGGTGATTTGTTTACAGGA
GGATGATGACCACGAGCACTTCCTCCAGGCCTTGGGTGGTGGCGCTGGTG
CTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGTTGCTGCTACTGCT
GCTACTGCTGCAGCGGCCACTCCCGGTGATGGAAAAGAAGAAAATAAACT
CTCTTCGACCACCTCCGCCTCCCTCCCTTCCTTTCCTACCTACACGGGGC
TTTGGAAAAAACGCACCGGGGCGGATAAAATCGACGGGGTATCCGTTTAT
TGGCAGATTCAAAAATTTGAATTTGTGGAAAGTGAGGAGGTGGAGTACCG
TGTCCCGGGGTGTGGGCACTTAGATAGAGATAACGTCGCACTGCTGGTGG
TGTTGCAAGAGAGGGAAGGAGGCAAAGGAGGGAAGGAAAGGAAAGGAGGG
GGGGAGGAGGAAGAGGGGACAGGGCGGGGGAGAGGGAGGACGTTGATCGT
GGCAAACACCCACCTATTGTTCAACCCCAGGAGAGGAGATGTCAAGTTGG
CCCAGCTGCAGATGCTGCTAGGGAGGATGGAGCGGTTGCAGCAGCGATAC
CCGGAGGCAGGGATAGGTAAGTCAGTCTGAGTGTTGCCGCCGAGGAGTGA
AGTACACTATCATCCCCCTCCCCTCCCCCCCCTCCTTCCTGACCCTTTTC
ACCAGTTCTCCCTCCCTCCCTCCATCCCTCAGTGATATGTGGTGATTTTA
ATGCCACACCTGTCAGCGCCTTGTACGCGTGGATGGCCACGGGGAGGCTG
GACGTTGACCAACTAAATAGGCGATGGGTGGGAGGAAAGAGGGAAGGAGG
GAGAGGGAGGGAGGAGGGGGTGATGCCATTTGAGGAGGTGGCTTGGGGAG
GAGGAAGAGGGGGAGGGAGGGACGGAAGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|581950

>mRNA_3383-protein ID=mRNA_3383-protein|Name=jgi.p|Nanoce1779_2|581950|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MGAEVICLQEDDDHEHFLQALGGGAGAGAGAGAGAGAAVAATAATAAAAT
PGDGKEENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFE
FVESEEVEYRVPGCGHLDRDNVALLVVLQEREGGKGGKERKGGGEEEEGT
GRGRGRTLIVANTHLLFNPRRGDVKLAQLQMLLGRMERLQQRYPEAGIGK
SV*

mRNA from alignment at scaffold_6:183956..185540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3383 ID=mRNA_3383|Name=jgi.p|Nanoce1779_2|581950|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_6:183956..185540+ (Nannochloropsis oceanica)
GCAGGCGCGGCTGCATAGGATCAGGAGGAGGAAGAGGAGGACGAGGAGGA
GCAGGGGAGCAGGGGCGGGGAAGGGGAGGAGGCTTCGCCTGTCTAGGCGG
CGGCGGCCGTGAACGACCACATATAGAAGCAGGGCAATATCATTTCTCCA
ATCCGCAACATCACCAGTGGCAGACGCATCACACACAAGTGCGCGAACAC
CAACACCATCACCACCAACAGCATCAGCAGCAGCAGTCTAAGGACTTGCA
CGCATACTACCGTTTTGCCCAGCACTATTCCGCCCACCTCCGAGCTGGAA
CAAGGGATGCAGTCGTCAGTAGGAGAGGAAAAGGAAGAGGATGGTGGGAA
GGAGGTCCAGGTGGTGGAGGAGGAGTTTCATCGCTACACACACCCAGCGG
AAGAAGCAGCAGCAGCAGCGGCAGCCATCACCCTGCGTACCCTCCCCGGA
ACGGCCTTCCCTCGTTCCACCGCCCCTGGATCAGGCCCAGCACCCGCCCT
TCCCCTTCTTCCTCTCATCCCTTGCCCCCTTCTTCGAGCTCGGGCTTTAC
TCTGCTTTCGTGGAATGTGCTGGCCTCCAGTCTAGTGGATCGGTCTTTCT
TGGGGTTCGCCACGGACGAGGAGCTGGCGTGGTGCGTCAGAGGACCCCGT
ATTCAGGCCGTGTTGAGAGAGATGGGAGCCGAGGTGATTTGTTTACAGGA
GGATGATGACCACGAGCACTTCCTCCAGGCCTTGGGTGGTGGCGCTGGTG
CTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGTTGCTGCTACTGCT
GCTACTGCTGCAGCGGCCACTCCCGGTGATGGAAAAGAAGAAAATAAACT
CTCTTCGACCACCTCCGCCTCCCTCCCTTCCTTTCCTACCTACACGGGGC
TTTGGAAAAAACGCACCGGGGCGGATAAAATCGACGGGGTATCCGTTTAT
TGGCAGATTCAAAAATTTGAATTTGTGGAAAGTGAGGAGGTGGAGTACCG
TGTCCCGGGGTGTGGGCACTTAGATAGAGATAACGTCGCACTGCTGGTGG
TGTTGCAAGAGAGGGAAGGAGGCAAAGGAGGGAAGGAAAGGAAAGGAGGG
GGGGAGGAGGAAGAGGGGACAGGGCGGGGGAGAGGGAGGACGTTGATCGT
GGCAAACACCCACCTATTGTTCAACCCCAGGAGAGGAGATGTCAAGTTGG
CCCAGCTGCAGATGCTGCTAGGGAGGATGGAGCGGTTGCAGCAGCGATAC
CCGGAGGCAGGGATAGGTAAGTCAGTCTGAGTGTTGCCGCCGAGGAGTGA
AGTACACTATCATCCCCCTCCCCTCCCCCCCCTCCTTCCTGACCCTTTTC
ACCAGTTCTCCCTCCCTCCCTCCATCCCTCAGTGATATGTGGTGATTTTA
ATGCCACACCTGTCAGCGCCTTGTACGCGTGGATGGCCACGGGGAGGCTG
GACGTTGACCAACTAAATAGGCGATGGGTGGGAGGAAAGAGGGAAGGAGG
GAGAGGGAGGGAGGAGGGGGTGATGCCATTTGAGGAGGTGGCTTGGGGAG
GAGGAAGAGGGGGAGGGAGGGACGGAAGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_6:183956..185540+

>mRNA_3383 ID=mRNA_3383|Name=jgi.p|Nanoce1779_2|581950|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_6:183956..185540+ (Nannochloropsis oceanica)
ATGGGAGCCGAGGTGATTTGTTTACAGGAGGATGATGACCACGAGCACTT
CCTCCAGGCCTTGGGTGGTGGCGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGGTGCTGCTGTTGCTGCTACTGCTGCTACTGCTGCAGCGGCCACT
CCCGGTGATGGAAAAGAAGAAAATAAACTCTCTTCGACCACCTCCGCCTC
CCTCCCTTCCTTTCCTACCTACACGGGGCTTTGGAAAAAACGCACCGGGG
CGGATAAAATCGACGGGGTATCCGTTTATTGGCAGATTCAAAAATTTGAA
TTTGTGGAAAGTGAGGAGGTGGAGTACCGTGTCCCGGGGTGTGGGCACTT
AGATAGAGATAACGTCGCACTGCTGGTGGTGTTGCAAGAGAGGGAAGGAG
GCAAAGGAGGGAAGGAAAGGAAAGGAGGGGGGGAGGAGGAAGAGGGGACA
GGGCGGGGGAGAGGGAGGACGTTGATCGTGGCAAACACCCACCTATTGTT
CAACCCCAGGAGAGGAGATGTCAAGTTGGCCCAGCTGCAGATGCTGCTAG
GGAGGATGGAGCGGTTGCAGCAGCGATACCCGGAGGCAGGGATAGGTAAG
TCAGTCTGA

Synonyms

Publications