jgi.p|Nanoce1779_2|582688, mRNA_3585 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582688
Unique NamemRNA_3585
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1643
Alignment locationscaffold_6:709080..710722 -

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Properties
Property NameValue
TranscriptId582774
TrackFilteredModels2
ProteinId582688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:709080..710722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582688gene_3585Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582688mRNA_3585-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3585CDS_3585Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3585 ID=mRNA_3585|Name=jgi.p|Nanoce1779_2|582688|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
GTGGTCTTTCCTTCAGCTATCCGCGGTGAGGAGTGATGATGGGGTATCTC
TCCTCTCCTGCAATCTGTCCAAATCTCCAACTATTTATACACTTAATCAA
TCACAGGTAGACAATCGGTGTCCCTGCATAGCATGTGGTGCTGCACCCAG
CATACTGCTTAACTTGGGACCCAGCCGCTGGCTGACAGGCTCTTCCTCTT
CGCTCTTAGTCGCTCGAAGCATGCCCGCATCCATTCTGGCGCTGCCTTCG
CTCGTTTTTCGCTATGAGCCTACTACTAGTGATCGCGCACAACAAATGAC
ATCTCATCGCATCCTCTTCAAATACAGGTAGCGATATGGCGCAGGACAAG
AGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAATACCAAAGTGTCCGCT
GGTAGCACCATCATCATCCTTCCCAGAAAGAATGCGAGTGCCGTCAGAGC
TAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTCCAGCCCCCACGTCTC
GTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCGTGCAAGCGAGATCCG
GCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGTTCCCGGAACTGGTGG
CGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCCTTGGCCCTCGCTCAG
GTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGGATTGCGTGACATAAC
GGCAGATGAGCTGGTGGGAGACATTATGAAAATTGGTTTGCGTGTGCCCT
TGGTCCTGATGGCCGCGCCACACACCGTCGACACCCAAAAGGCAGCTGCC
TGTGGCTTCAACGCCATATTGTTGCGGCCTGTGACGGGAGCAGGCTTGGT
CGGTGTGATCCGGGCCTTGTGTCTGTCACCACCACCATCGACAAGCCAAC
AGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTAGCGCGTGCCTCGCAC
GCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAACTAATATAACGCGCCC
CGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGGAGGATGTAATTGTAG
GGGCTGCTACTATCTACGAGGATGGCGATATTCAAGCCTCTTCGATATCG
TCTTGGCGGCCACCTCAAATTCTGCGCATGCCTATTAGCGAGACCTTGAG
TCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAGTAGCACCTGCACCTC
GAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTGTAGTCAGATTTTGCG
TCTGATAGAATGCCTCCCAGTTGTCAGATGTTAAAAAAAAAAACGGTGTC
ATACAAGGGGGGTGAGTATAATCATTTAGAGGCAGTGGTATGATCTTCTC
ATTTTATTTTTTTGCGTTAATTTCTTGTGTTCCCTCATTTTACTTCTTTC
CACCCTCTCCTCCACCTTGCTTACTCGTCAGCTGCTGGATTCGAGCCTTC
TTACGTTTTGTGATGCGATGAAGCGCCCAAGATTCTGCTCCCTCTCACTC
AAGACATTCCAATTGGAAATACGTCAAACCGCACCGTCGATTCCAGTGAT
GATAGTACCGAGACGGTCAAGCTTTATAGAAGCACCATCCACTGTTATAG
GACGCCTGGATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|582688

>mRNA_3585-protein ID=mRNA_3585-protein|Name=jgi.p|Nanoce1779_2|582688|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAQDKSRVPDKPPLSQIPKCPLVAPSSSFPERMRVPSELETAVAPQPFLL
QPPRLVRVLFVDTYVARASEIRRALEHESRGGLFPELVAAFDVVREGLEA
LALAQVVPYDAVFLSAGLRDITADELVGDIMKIGLRVPLVLMAAPHTVDT
QKAAACGFNAILLRPVTGAGLVGVIRALCLSPPPSTSQQSEMLGPASQAV
ARASHASPSSSSLQAATNITRPVLPPPQNLPDWEDVIVGAATIYEDGDIQ
ASSISSWRPPQILRMPISETLSHLRLQAHEPKRVAPAPRGWCVKKKFKTV
*
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mRNA from alignment at scaffold_6:709080..710722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3585 ID=mRNA_3585|Name=jgi.p|Nanoce1779_2|582688|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_6:709080..710722- (Nannochloropsis oceanica)
GTGGTCTTTCCTTCAGCTATCCGCGGTGAGGAGTGATGATGGGGTATCTC
TCCTCTCCTGCAATCTGTCCAAATCTCCAACTATTTATACACTTAATCAA
TCACAGGTAGACAATCGGTGTCCCTGCATAGCATGTGGTGCTGCACCCAG
CATACTGCTTAACTTGGGACCCAGCCGCTGGCTGACAGGCTCTTCCTCTT
CGCTCTTAGTCGCTCGAAGCATGCCCGCATCCATTCTGGCGCTGCCTTCG
CTCGTTTTTCGCTATGAGCCTACTACTAGTGATCGCGCACAACAAATGAC
ATCTCATCGCATCCTCTTCAAATACAGGTAGCGATATGGCGCAGGACAAG
AGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAATACCAAAGTGTCCGCT
GGTAGCACCATCATCATCCTTCCCAGAAAGAATGCGAGTGCCGTCAGAGC
TAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTCCAGCCCCCACGTCTC
GTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCGTGCAAGCGAGATCCG
GCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGTTCCCGGAACTGGTGG
CGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCCTTGGCCCTCGCTCAG
GTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGGATTGCGTGACATAAC
GGCAGATGAGCTGGTGGGAGACATTATGAAAATTGGTTTGCGTGTGCCCT
TGGTCCTGATGGCCGCGCCACACACCGTCGACACCCAAAAGGCAGCTGCC
TGTGGCTTCAACGCCATATTGTTGCGGCCTGTGACGGGAGCAGGCTTGGT
CGGTGTGATCCGGGCCTTGTGTCTGTCACCACCACCATCGACAAGCCAAC
AGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTAGCGCGTGCCTCGCAC
GCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAACTAATATAACGCGCCC
CGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGGAGGATGTAATTGTAG
GGGCTGCTACTATCTACGAGGATGGCGATATTCAAGCCTCTTCGATATCG
TCTTGGCGGCCACCTCAAATTCTGCGCATGCCTATTAGCGAGACCTTGAG
TCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAGTAGCACCTGCACCTC
GAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTGTAGTCAGATTTTGCG
TCTGATAGAATGCCTCCCAGTTGTCAGATGTTAAAAAAAAAAACGGTGTC
ATACAAGGGGGGTGAGTATAATCATTTAGAGGCAGTGGTATGATCTTCTC
ATTTTATTTTTTTGCGTTAATTTCTTGTGTTCCCTCATTTTACTTCTTTC
CACCCTCTCCTCCACCTTGCTTACTCGTCAGCTGCTGGATTCGAGCCTTC
TTACGTTTTGTGATGCGATGAAGCGCCCAAGATTCTGCTCCCTCTCACTC
AAGACATTCCAATTGGAAATACGTCAAACCGCACCGTCGATTCCAGTGAT
GATAGTACCGAGACGGTCAAGCTTTATAGAAGCACCATCCACTGTTATAG
GACGCCTGGATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_6:709080..710722-

>mRNA_3585 ID=mRNA_3585|Name=jgi.p|Nanoce1779_2|582688|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_6:709080..710722- (Nannochloropsis oceanica)
ATGGCGCAGGACAAGAGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAAT
ACCAAAGTGTCCGCTGGTAGCACCATCATCATCCTTCCCAGAAAGAATGC
GAGTGCCGTCAGAGCTAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTC
CAGCCCCCACGTCTCGTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCG
TGCAAGCGAGATCCGGCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGT
TCCCGGAACTGGTGGCGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCC
TTGGCCCTCGCTCAGGTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGG
ATTGCGTGACATAACGGCAGATGAGCTGGTGGGAGACATTATGAAAATTG
GTTTGCGTGTGCCCTTGGTCCTGATGGCCGCGCCACACACCGTCGACACC
CAAAAGGCAGCTGCCTGTGGCTTCAACGCCATATTGTTGCGGCCTGTGAC
GGGAGCAGGCTTGGTCGGTGTGATCCGGGCCTTGTGTCTGTCACCACCAC
CATCGACAAGCCAACAGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTA
GCGCGTGCCTCGCACGCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAAC
TAATATAACGCGCCCCGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGG
AGGATGTAATTGTAGGGGCTGCTACTATCTACGAGGATGGCGATATTCAA
GCCTCTTCGATATCGTCTTGGCGGCCACCTCAAATTCTGCGCATGCCTAT
TAGCGAGACCTTGAGTCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAG
TAGCACCTGCACCTCGAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTG
TAG
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Synonyms
Publications