jgi.p|Nanoce1779_2|583719, mRNA_2893 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583719
Unique NamemRNA_2893
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_7:179582..181085 -

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Properties
Property NameValue
TranscriptId583805
TrackFilteredModels2
ProteinId583719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:179582..181085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583719gene_2893Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583719mRNA_2893-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2893CDS_2893Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2893 ID=mRNA_2893|Name=jgi.p|Nanoce1779_2|583719|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
GAGCGGGGCATGGTGCTGCTGAAGGCGGCAGATGTCGAATGGATGCGTCG
GGTGCGGGTAAGGGCGTGGAGGAATGCAGAGGTCGTCTGCTCTTATTCGT
CATGCCGGCAAGAATTCATACTCCCTCGCTCTCTCCTAGGTAGCCTACCA
TAACAACACAGGCGCAGAACGATTTTCACCACAATAACATCAAGCTCAGC
TTATTCATCTTTCCCGCGCAGTGCGCTACATGTTGTTGTGACCACAGGCG
TATGAGTCAAGGCCAGAAGAAGCAAATATTGGCGAAGCTTCGCTCCCGAC
GACTGCCTGGGCTGACTTACCACACTCAAGCACTCTTACCCCGCATTTAA
AAACACGCTAGACAAAAGTACAATAAAGCAGGAATACGTGCCACTCAACC
CAGGAACCGTCCACCTTTCAGCCATGCCGCCCCCCCGCTTCATCCTCGCC
CTTACCCTCCTCCTGGCGGCCCTCCCTTTGGGCACCACGAGTGGCATGGT
TACCTACAAGCTGCAGCATGCCTTTGGACTCACAGCCACCTTCCAGGACC
GGGGTAGCATTGATGTCTTAGTGGACAGTGGGGCACTCACCCTCATTCCG
CCTGCGGAAAACCAGCCCGTGCTCGTGCCCGAGGGGTCCTTGGACGAGAT
AGCCCGTGAAATGAGGCAGCCCGACGGCGGGTTGTACCGTTTGCGGGCGC
AGCGCAGCGATGCCCCAGCTCCTGTGATCATGACGAGTGTCCATCTCTGC
GACTTGGTCCGTGCGGGGTTCCGGGAGAATATCACACTGACGCTTGATGT
GGATGGACGGCTGTTGGGATTGGAGTACACGCCGCGCATGAGCCGCTTGT
CGCCCACGACATGCCTGGCAATGAAATCCCCCTTGGACGAAGTCAATCGC
AACACCGATGGAACGAGGAGAGATGCCGTAGCCGATAGGGGGCCTTCGGC
ATTCTCTACGCTAATTAAGGCATCTGTGGACCAGGCAGGGCAGAGTCTTC
CGGTGTTTGTGCCCGGACAGAGGCCCCCGATGATTCAAATTCGATACGAC
GAACAGGAACGAAGGCCGGAGGTGGAGAAGAGTTTTTTACAAAAATATTG
GATTTTTATCGTCTTGGCTTTCTTACTTCTCAACTCAGGGGCAGCGCCAC
CGGAAGAAGGAGGAGCTGGAGGAGGCGCGGGGGGTCAAGTACCACCTCTA
CAACAAGGACATGGGCATGGCGTGCCCAGGGATGGTGGAGGAGGGCAAAA
ACGGGACTGAGCTAGGAGCAAAAAATGAAATACCAGAAGCCACAAAGAAT
GAAAGCATGAAAAGGATGGAAGAAAAAGTGTAATCATTTGGGTT
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protein sequence of jgi.p|Nanoce1779_2|583719

>mRNA_2893-protein ID=mRNA_2893-protein|Name=jgi.p|Nanoce1779_2|583719|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MPPPRFILALTLLLAALPLGTTSGMVTYKLQHAFGLTATFQDRGSIDVLV
DSGALTLIPPAENQPVLVPEGSLDEIAREMRQPDGGLYRLRAQRSDAPAP
VIMTSVHLCDLVRAGFRENITLTLDVDGRLLGLEYTPRMSRLSPTTCLAM
KSPLDEVNRNTDGTRRDAVADRGPSAFSTLIKASVDQAGQSLPVFVPGQR
PPMIQIRYDEQERRPEVEKSFLQKYWIFIVLAFLLLNSGAAPPEEGGAGG
GAGGQVPPLQQGHGHGVPRDGGGGQKRD*
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mRNA from alignment at scaffold_7:179582..181085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2893 ID=mRNA_2893|Name=jgi.p|Nanoce1779_2|583719|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at scaffold_7:179582..181085- (Nannochloropsis oceanica)
GAGCGGGGCATGGTGCTGCTGAAGGCGGCAGATGTCGAATGGATGCGTCG
GGTGCGGGTAAGGGCGTGGAGGAATGCAGAGGTCGTCTGCTCTTATTCGT
CATGCCGGCAAGAATTCATACTCCCTCGCTCTCTCCTAGGTAGCCTACCA
TAACAACACAGGCGCAGAACGATTTTCACCACAATAACATCAAGCTCAGC
TTATTCATCTTTCCCGCGCAGTGCGCTACATGTTGTTGTGACCACAGGCG
TATGAGTCAAGGCCAGAAGAAGCAAATATTGGCGAAGCTTCGCTCCCGAC
GACTGCCTGGGCTGACTTACCACACTCAAGCACTCTTACCCCGCATTTAA
AAACACGCTAGACAAAAGTACAATAAAGCAGGAATACGTGCCACTCAACC
CAGGAACCGTCCACCTTTCAGCCATGCCGCCCCCCCGCTTCATCCTCGCC
CTTACCCTCCTCCTGGCGGCCCTCCCTTTGGGCACCACGAGTGGCATGGT
TACCTACAAGCTGCAGCATGCCTTTGGACTCACAGCCACCTTCCAGGACC
GGGGTAGCATTGATGTCTTAGTGGACAGTGGGGCACTCACCCTCATTCCG
CCTGCGGAAAACCAGCCCGTGCTCGTGCCCGAGGGGTCCTTGGACGAGAT
AGCCCGTGAAATGAGGCAGCCCGACGGCGGGTTGTACCGTTTGCGGGCGC
AGCGCAGCGATGCCCCAGCTCCTGTGATCATGACGAGTGTCCATCTCTGC
GACTTGGTCCGTGCGGGGTTCCGGGAGAATATCACACTGACGCTTGATGT
GGATGGACGGCTGTTGGGATTGGAGTACACGCCGCGCATGAGCCGCTTGT
CGCCCACGACATGCCTGGCAATGAAATCCCCCTTGGACGAAGTCAATCGC
AACACCGATGGAACGAGGAGAGATGCCGTAGCCGATAGGGGGCCTTCGGC
ATTCTCTACGCTAATTAAGGCATCTGTGGACCAGGCAGGGCAGAGTCTTC
CGGTGTTTGTGCCCGGACAGAGGCCCCCGATGATTCAAATTCGATACGAC
GAACAGGAACGAAGGCCGGAGGTGGAGAAGAGTTTTTTACAAAAATATGT
AAGTTGAGACGGGAAGGGAAGGAGGAAGGGATGGGCAACGAGAGTTGCCG
GCACAGGCACAGTGGCATGGCAGTCAACATATACAAGATCTTCCCCTTTT
ACCAATTTATTCTTACGTTTCTCTCATTTTCTTTTTGTTCCATTTTGCAC
ACAATAAGTGGATTTTTATCGTCTTGGCTTTCTTACTTCTCAACTCAGGG
GCAGCGCCACCGGAAGAAGGAGGAGCTGGAGGAGGCGCGGGGGGTCAAGT
ACCACCTCTACAACAAGGACATGGGCATGGCGTGCCCAGGGATGGTGGAG
GAGGGCAAAAACGGGACTGAGCTAGGAGCAAAAAATGAAATACCAGAAGC
CACAAAGAATGAAAGCATGAAAAGGATGGAAGAAAAAGTGTAATCATTTG
GGTT
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Coding sequence (CDS) from alignment at scaffold_7:179582..181085-

>mRNA_2893 ID=mRNA_2893|Name=jgi.p|Nanoce1779_2|583719|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_7:179582..181085- (Nannochloropsis oceanica)
TGGATTTTTATCGTCTTGGCTTTCTTACTTCTCAACTCAGGGGCAGCGCC
ACCGGAAGAAGGAGGAGCTGGAGGAGGCGCGGGGGGTCAAGTACCACCTC
TACAACAAGGACATGGGCATGGCGTGCCCAGGGATGGTGGAGGAGGGCAA
AAACGGGACTGAATGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCT
CCTGGCGGCCCTCCCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGC
TGCAGCATGCCTTTGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATT
GATGTCTTAGTGGACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAA
CCAGCCCGTGCTCGTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAA
TGAGGCAGCCCGACGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGAT
GCCCCAGCTCCTGTGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCG
TGCGGGGTTCCGGGAGAATATCACACTGACGCTTGATGTGGATGGACGGC
TGTTGGGATTGGAGTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACA
TGCCTGGCAATGAAATCCCCCTTGGACGAAGTCAATCGCAACACCGATGG
AACGAGGAGAGATGCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGC
TAATTAAGGCATCTGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTG
CCCGGACAGAGGCCCCCGATGATTCAAATTCGATACGACGAACAGGAACG
AAGGCCGGAGGTGGAGAAGAGTTTTTTACAAAAATATTGGATTTTTATCG
TCTTGGCTTTCTTACTTCTCAACTCAGGGGCAGCGCCACCGGAAGAAGGA
GGAGCTGGAGGAGGCGCGGGGGGTCAAGTACCACCTCTACAACAAGGACA
TGGGCATGGCGTGCCCAGGGATGGTGGAGGAGGGCAAAAACGGGACTGAA
TGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCTCCTGGCGGCCCTC
CCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGCTGCAGCATGCCTT
TGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATTGATGTCTTAGTGG
ACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAACCAGCCCGTGCTC
GTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAATGAGGCAGCCCGA
CGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGATGCCCCAGCTCCTG
TGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCGTGCGGGGTTCCGG
GAGAATATCACACTGACGCTTGATGTGGATGGACGGCTGTTGGGATTGGA
GTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACATGCCTGGCAATGA
AATCCCCCTTGGACGAAGTCAATCGCAACACCGATGGAACGAGGAGAGAT
GCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGCTAATTAAGGCATC
TGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTGCCCGGACAGAGGC
CCCCGATGATTCAAATTCGATACGACGAACAGGAACGAAGGCCGGAGGTG
GAGAAGAGTTTTTTACAAAAATAT
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Synonyms
Publications