jgi.p|Nanoce1779_2|613209, mRNA_10920 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613209
Unique NamemRNA_10920
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length742
Alignment locationscaffold_71:72244..73226 +

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Properties
Property NameValue
TranscriptId613295
TrackFilteredModels2
ProteinId613209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:72244..73226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613209gene_10920Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613209mRNA_10920-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10920CDS_10920Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10920 ID=mRNA_10920|Name=jgi.p|Nanoce1779_2|613209|organism=Nannochloropsis oceanica|type=mRNA|length=742bp
AGCACACAGACACCATAATACGGCCACACAGGACACATCACAGTGTAAGC
TACACGCCATATCCGCAGCCCACCTGACTACGTGTCCTTTAGCCTTCTCC
CTTTCCCTTTCTTCCGCCCATGACTGCATCGCCTCCATCCGAAACCGCTT
GCTCCCCCGACCCTCCACCATCACGCCGATTGGTAGCAGCATTGCATGCC
TGCCAGGTGCACGTGTGGGCACCTTTGTTCCGGAAATGGACTTTGAAGTC
GCGCTCGATAACATTATCCTCGGAATTTCTTTCATGGCTGCAAACTGACG
GTGTCATACTTCCACCCTCCGTTGAGCTCAGCAGTACTGGCCACGAGCGC
ACCCAGCATGAAGACGGTGAAGACGACTGGGAGATTGAATGGCAAAGACG
GGTCGAGAAGGAAAGTATCCGCTCTTCGTATTCCTCGCCCTCTTTCCCCG
CCTTTGAAGCAGCCCTGACAGAGGCTATTGCGGAACTGGGCGGTGCCGTC
GTGCCCAAGCTAAATTGGAGCGTGCCCAGGGATGCAGCTTGGGTGAACGG
CGGCACAATAAAATGCGAGACGGCAGGTGATGTGATGCTCCTGCTCAAGA
GCTCGGACCGCATGCAGAACGATCTGGACCGCCTGGAAGAGCTGGTAAGA
GGGGTGTAAAGAGAAAGACGGAGAGAGAGGAAAGATCACGGGAGAATGGA
ATGAAGGAGAGGGGGGGCTCTTGTGGTTCATTGAAGATCCTT
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protein sequence of jgi.p|Nanoce1779_2|613209

>mRNA_10920-protein ID=mRNA_10920-protein|Name=jgi.p|Nanoce1779_2|613209|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MTASPPSETACSPDPPPSRRLVAALHACQVHVWAPLFRKWTLKSRSITLS
SEFLSWLQTDGVILPPSVELSSTGHERTQHEDGEDDWEIEWQRRVEKESI
RSSYSSPSFPAFEAALTEAIAELGGAVVPKLNWSVPRDAAWVNGGTIKCE
TAGDVMLLLKSSDRMQNDLDRLEELVRGV*
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mRNA from alignment at scaffold_71:72244..73226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10920 ID=mRNA_10920|Name=jgi.p|Nanoce1779_2|613209|organism=Nannochloropsis oceanica|type=mRNA|length=983bp|location=Sequence derived from alignment at scaffold_71:72244..73226+ (Nannochloropsis oceanica)
AGCACACAGACACCATAATACGGCCACACAGGACACATCACAGTGTAAGC
TACACGCCATATCCGCAGCCCACCTGACTACGTGTCCTTTAGCCTTCTCC
CTTTCCCTTTCTTCCGCCCATGACTGCATCGCCTCCATCCGAAACCGCTT
GCTCCCCCGACCCTCCACCATCACGCCGATTGGTAGCAGCATTGCATGCC
TGCCAGGTGCACGTGTGGGCACCTTTGTTCCGGAAATGGACTTTGAAGTC
GCGCTCGATAACATTATCCTCGGAATTTCTTTCATGGCTGCAAACTGACG
GTGTCATACTTCCACCCTCCGTTGAGCTCAGCAGTACTGGCCACGAGCGC
ACCCAGCATGAAGACGGTGAAGACGACTGGGAGATTGAATGGCAAAGACG
GGTCGAGAAGGAAAGTATCCGCTCTTCGTATTCCTCGCCCTCTTTCCCCG
CCTTTGAAGCAGCCCTGACAGAGGCTATTGCGGAACTGGGCGGTGCCGTC
GTGCCCAAGCTAAATTGGAGCGTGCCCAGGGATGCAGCTTGGTAAAAAGG
GGGGGAAGTTGGAGGAGGGATGGAAGGGTGGGGAGGGAGGGTCTGTGGTT
GGAGAGAATAGTAAGAGTGCCTTGAGAAAGAGCTAGCACGTGAAAGAGAG
GGGATACGGGGGGGCGGGAGGAAGGAATATACAAGAGGCCATCTCTTCTT
CGGTTTGTACTCGTCAGCCCTTACCGACGCCTTTTCCTCGCTCTTCTTTG
CTTCTCTCCCCCCTTATTCGTTTCTTCAAAAGGGTGAACGGCGGCACAAT
AAAATGCGAGACGGCAGGTGATGTGATGCTCCTGCTCAAGAGCTCGGACC
GCATGCAGAACGATCTGGACCGCCTGGAAGAGCTGGTAAGAGGGGTGTAA
AGAGAAAGACGGAGAGAGAGGAAAGATCACGGGAGAATGGAATGAAGGAG
AGGGGGGGCTCTTGTGGTTCATTGAAGATCCTT
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Coding sequence (CDS) from alignment at scaffold_71:72244..73226+

>mRNA_10920 ID=mRNA_10920|Name=jgi.p|Nanoce1779_2|613209|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_71:72244..73226+ (Nannochloropsis oceanica)
ATGACTGCATCGCCTCCATCCGAAACCGCTTGCTCCCCCGACCCTCCACC
ATCACGCCGATTGGTAGCAGCATTGCATGCCTGCCAGGTGCACGTGTGGG
CACCTTTGTTCCGGAAATGGACTTTGAAGTCGCGCTCGATAACATTATCC
TCGGAATTTCTTTCATGGCTGCAAACTGACGGTGTCATACTTCCACCCTC
CGTTGAGCTCAGCAGTACTGGCCACGAGCGCACCCAGCATGAAGACGGTG
AAGACGACTGGGAGATTGAATGGCAAAGACGGGTCGAGAAGGAAAGTATC
CGCTCTTCGTATTCCTCGCCCTCTTTCCCCGCCTTTGAAGCAGCCCTGAC
AGAGGCTATTGCGGAACTGGGCGGTGCCGTCGTGCCCAAGCTAAATTGGA
GCGTGCCCAGGGATGCAGCTTGGGTGAACGGCGGCACAATAAAATGCGAG
ACGGCAGGTGATGTGATGCTCCTGCTCAAGAGCTCGGACCGCATGCAGAA
CGATCTGGACCGCCTGGAAGAGCTGGTAAGAGGGGTGTAAATGACTGCAT
CGCCTCCATCCGAAACCGCTTGCTCCCCCGACCCTCCACCATCACGCCGA
TTGGTAGCAGCATTGCATGCCTGCCAGGTGCACGTGTGGGCACCTTTGTT
CCGGAAATGGACTTTGAAGTCGCGCTCGATAACATTATCCTCGGAATTTC
TTTCATGGCTGCAAACTGACGGTGTCATACTTCCACCCTCCGTTGAGCTC
AGCAGTACTGGCCACGAGCGCACCCAGCATGAAGACGGTGAAGACGACTG
GGAGATTGAATGGCAAAGACGGGTCGAGAAGGAAAGTATCCGCTCTTCGT
ATTCCTCGCCCTCTTTCCCCGCCTTTGAAGCAGCCCTGACAGAGGCTATT
GCGGAACTGGGCGGTGCCGTCGTGCCCAAGCTAAATTGGAGCGTGCCCAG
GGATGCAGCTTGGGTGAACGGCGGCACAATAAAATGCGAGACGGCAGGTG
ATGTGATGCTCCTGCTCAAGAGCTCGGACCGCATGCAGAACGATCTGGAC
CGCCTGGAAGAGCTGGTAAGAGGGGTGTAA
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Synonyms
Publications