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Properties
| Property Name | Value |
|---|
| TranscriptId | 420510 |
| Track | FilteredModels2 |
| ProteinId | 420424 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:547370..548879 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3981 ID=mRNA_3981|Name=jgi.p|Nanoce1779_2|420424|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
CCCACCTGGAAATGGAGCTGCTCGCCAACCCGTCTGTCCATGTGCTGTCT
TTGACTGTTGGCGCTGCTATCTCCAACAATCCCCTTTCCTGCTCGTGGTA
GCGGTCCCATAAACGCCGTCGCTTGCTCTACAAGCATCAATATGACTGCT
ACCGCCGCAACAAGGATCGAAGCCCGGCCTAACATAATTGACACTTTTAT
GGAAGGATCGATTGCAAGGAGGGGAAATGAATAATCCTACCGAAATTTGG
GAGCGCCGGTGCTGTTTTGATGTGGCGGGGAGTGCGGCGCCAAGCGACAT
ACCCCGGCACGCACGCACTCGCTAAGCCTACGCACAGTCATGCTCTCCCT
CCAAGGCCAAAAACCATGCCATGCAAGCCAACCCTCCTGAAACTCACCTT
AATGGTCTCTGCTGCGTATGCTTCACGTTATTGGGTGCCCCTCTGTGTTG
AGCGTGGTGGAAGTGGAAGGAAAAAAGAGGATGTTTGTGCGTGGGTGGCT
GCTGCAGCAGCCAACGTCATGACGTGCAATGCCACCGCCACATTCATCGA
CGTAATCCGAGCCCAGCAGAACAATGACCTCCAACGCATCGAGGCCGAGC
AGATGATGCGGGGGGAGAAGGCATACATGAACGGCAAAGAGCGCGAGATG
GAGGTCCTACAGACCGCAATCAAGACCGCGACAGCCAAGCGGGACTCAGC
AAGAGCGGTACGCACTTCATATCCTCCGTCCCCCTTCCTCATCCTCACCC
TCCCCATCGACTTACTTCCACCCCCTCTCTCCTGTACTCCAACAGACATA
CGACCGCCTTCGGGCTGACAATATTGTGCAAGCCCACAAGAACAAGGCCA
AGCGAGCAGGCATGCTGCAAGTCG back to topprotein sequence of jgi.p|Nanoce1779_2|420424 >mRNA_3981-protein ID=mRNA_3981-protein|Name=jgi.p|Nanoce1779_2|420424|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MWRGVRRQATYPGTHALAKPTHSHALPPRPKTMPCKPTLLKLTLMVSAAY
ASRYWVPLCVERGGSGRKKEDVCAWVAAAAANVMTCNATATFIDVIRAQQ
NNDLQRIEAEQMMRGEKAYMNGKEREMEVLQTAIKTATAKRDSARAVRTS
YPPSPFLILTLPIDLLPPPLSCTPTDIRPPSG* back to topmRNA from alignment at scaffold_8:547370..548879+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3981 ID=mRNA_3981|Name=jgi.p|Nanoce1779_2|420424|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp|location=Sequence derived from alignment at scaffold_8:547370..548879+ (Nannochloropsis oceanica)
CCCACCTGGAAATGGAGCTGCTCGCCAACCCGTCTGTCCATGTGCTGTCT
TTGACTGTTGGCGCTGCTATCTCCAACAATCCCCTTTCCTGCTCGTGGTA
GCGGTCCCATAAACGCCGTCGCTTGCTCTACAAGCATCAATATGACTGCT
ACCGCCGCAACAAGGATCGAAGCCCGGCCTAACATAATTGACACTTTTAT
GGAAGGATCGATTGCAAGGAGGGGAAATGAATAATCCTACCGAAATTTGG
GAGCGCCGGTGCTGTTTTGATGTGGCGGGGAGTGCGGCGCCAAGCGACAT
ACCCCGGCACGCACGCACTCGCTAAGCCTACGCACAGTCATGCTCTCCCT
CCAAGGCCAAAAACCATGCCATGCAAGCCAACCCTCCTGAAACTCACCTT
AATGGTCTCTGCTGCGTATGCTTCACGTTATTGGGTGCCCCTCTGTGTTG
AGCGTGGTGGAAGTGGAAGGAAAAAAGAGGATGTTTGTGCGTGGGTGGCT
GCTGCAGCAGGTGGGTGAGTTGCTGATAGAAGTATTGCTTTCCGGCCCAA
CAAGAGCTCGAAGAGGTAGTCCATGACGATCCTCTGCCTTGCTTAGAGCA
GGGTAGGACAGGCTTGTCATTGGATGCTTGTTTCTGGTGTGTTAAGACGC
TGCAACACGCACAACGCGGCTCGTCTCACTCACTTCACATGATTGTGGTG
ATTGTCAATGAGCAACTTCCACCTCATTTCCTGCCTTACGCACATGACAA
CATTCCCTTTCCTCCTATTTTCCCCCTTTTTCTCACTCATAAGTCTTCAT
ACTTCTCTTCTTTCTCGTCCTTCTCTCTCCTCGGGCACCGCTCATCGCTG
CCCCGCCCAACCAACCTCTCCTCCAACCTCCTGCTCCTCTCCTCCTCCTC
TTCCTCCTTTTCCTCCTCCTCTTACAACACTACCATAGCCAACGTCATGA
CGTGCAATGCCACCGCCACATTCATCGACGTAATCCGAGCCCAGCAGAAC
AATGACCTCCAACGCATCGAGGCCGAGCAGATGATGCGGGGGGAGAAGGC
ATACATGAACGGCAAAGGTGCGTGAGTGATGGTGGAGATGAGGAGGAGGG
AGGGAAGGAGGGAAGCCAAGACAAGACCAGCGCCCTCCGTCATCGTCGTG
ACAAAGGGGGAATATTGTCCGAAAGGGGTCCAGAGCACGAGAAGCAGGCT
CTCCTCCATTCCTCTTACTCTCCTGGCAGCTTTCTTTACTTCCTGGTCTT
TCCCACTTCCTGCAAAACAAAACAGAGCGCGAGATGGAGGTCCTACAGAC
CGCAATCAAGACCGCGACAGCCAAGCGGGACTCAGCAAGAGCGGTACGCA
CTTCATATCCTCCGTCCCCCTTCCTCATCCTCACCCTCCCCATCGACTTA
CTTCCACCCCCTCTCTCCTGTACTCCAACAGACATACGACCGCCTTCGGG
CTGACAATATTGTGCAAGCCCACAAGAACAAGGCCAAGCGAGCAGGCATG
CTGCAAGTCG back to topCoding sequence (CDS) from alignment at scaffold_8:547370..548879+ >mRNA_3981 ID=mRNA_3981|Name=jgi.p|Nanoce1779_2|420424|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_8:547370..548879+ (Nannochloropsis oceanica)
ATGTGGCGGGGAGTGCGGCGCCAAGCGACATACCCCGGCACGCACGCACT
CGCTAAGCCTACGCACAGTCATGCTCTCCCTCCAAGGCCAAAAACCATGC
CATGCAAGCCAACCCTCCTGAAACTCACCTTAATGGTCTCTGCTGCGTAT
GCTTCACGTTATTGGGTGCCCCTCTGTGTTGAGCGTGGTGGAAGTGGAAG
GAAAAAAGAGGATGTTTGTGCGTGGGTGGCTGCTGCAGCAGCCAACGTCA
TGACGTGCAATGCCACCGCCACATTCATCGACGTAATCCGAGCCCAGCAG
AACAATGACCTCCAACGCATCGAGGCCGAGCAGATGATGCGGGGGGAGAA
GGCATACATGAACGGCAAAGAGCGCGAGATGGAGGTCCTACAGACCGCAA
TCAAGACCGCGACAGCCAAGCGGGACTCAGCAAGAGCGGTACGCACTTCA
TATCCTCCGTCCCCCTTCCTCATCCTCACCCTCCCCATCGACTTACTTCC
ACCCCCTCTCTCCTGTACTCCAACAGACATACGACCGCCTTCGGGCTGAA
TGTGGCGGGGAGTGCGGCGCCAAGCGACATACCCCGGCACGCACGCACTC
GCTAAGCCTACGCACAGTCATGCTCTCCCTCCAAGGCCAAAAACCATGCC
ATGCAAGCCAACCCTCCTGAAACTCACCTTAATGGTCTCTGCTGCGTATG
CTTCACGTTATTGGGTGCCCCTCTGTGTTGAGCGTGGTGGAAGTGGAAGG
AAAAAAGAGGATGTTTGTGCGTGGGTGGCTGCTGCAGCAGCCAACGTCAT
GACGTGCAATGCCACCGCCACATTCATCGACGTAATCCGAGCCCAGCAGA
ACAATGACCTCCAACGCATCGAGGCCGAGCAGATGATGCGGGGGGAGAAG
GCATACATGAACGGCAAAGAGCGCGAGATGGAGGTCCTACAGACCGCAAT
CAAGACCGCGACAGCCAAGCGGGACTCAGCAAGAGCGGTACGCACTTCAT
ATCCTCCGTCCCCCTTCCTCATCCTCACCCTCCCCATCGACTTACTTCCA
CCCCCTCTCTCCTGTACTCCAACAGACATACGACCGCCTTCGGGCTGAAT
GTGGCGGGGAGTGCGGCGCCAAGCGACATACCCCGGCACGCACGCACTCG
CTAAGCCTACGCACAGTCATGCTCTCCCTCCAAGGCCAAAAACCATGCCA
TGCAAGCCAACCCTCCTGAAACTCACCTTAATGGTCTCTGCTGCGTATGC
TTCACGTTATTGGGTGCCCCTCTGTGTTGAGCGTGGTGGAAGTGGAAGGA
AAAAAGAGGATGTTTGTGCGTGGGTGGCTGCTGCAGCAGCCAACGTCATG
ACGTGCAATGCCACCGCCACATTCATCGACGTAATCCGAGCCCAGCAGAA
CAATGACCTCCAACGCATCGAGGCCGAGCAGATGATGCGGGGGGAGAAGG
CATACATGAACGGCAAAGAGCGCGAGATGGAGGTCCTACAGACCGCAATC
AAGACCGCGACAGCCAAGCGGGACTCAGCAAGAGCGGTACGCACTTCATA
TCCTCCGTCCCCCTTCCTCATCCTCACCCTCCCCATCGACTTACTTCCAC
CCCCTCTCTCCTGTACTCCAACAGACATACGACCGCCTTCGGGCTGA back to top
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