jgi.p|Nanoce1779_2|585984, mRNA_3966 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585984
Unique NamemRNA_3966
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1422
Alignment locationscaffold_8:519995..521416 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586070
TrackFilteredModels2
ProteinId585984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:519995..521416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585984gene_3966Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585984mRNA_3966-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3966CDS_3966Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3966 ID=mRNA_3966|Name=jgi.p|Nanoce1779_2|585984|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
CAAAAAACAATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGG
GAAGGCCAAACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCC
AGAAGCGGTGACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCC
TCCCTTCCTTCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCC
GCCCTCCGATCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATAC
CTCCTTGGACCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAAT
CCGATGAGCTCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATA
TCAGTACGAGAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCC
TTTACACCTGGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGC
TCTCTTACGGCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTC
CATCTGAGCAGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGC
CGACCCTTCCATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAG
CCATCCGACGTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCT
CGTCACCGGCGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCT
CCATCTCGCCTGAGGCGTCGGTCTACTCGATGCTGTCGTCCTACTCCTTG
ACTACGAGGCGCATAAAGAAGCCATGGATAAGGAAGGGCTGCGCCCGCTC
CATGTCATATATTCGTCGATCGATCAGCTCGCAACGGGACCTGACATCGT
CAAGCACCTTTATGGACGCAGGCGTGGATGGGGCAGGACGCACGTCGCAG
GGAAGACACCATTACATCTATTATGCGAGAACAAGAAACGGTTTGAGTCT
TTTTCGGGGGAGGTGTGTGAGATGGCAAGAATGTTGCTGCGGAAGAGAGG
AGTTTCAGTTGGTATGGTAGAAAAGGACGGAACGACTCCATTGATGTTGA
CAACTCGTAATGAGTTGTGGGGGTTGTGCGACCTACTGACGGAGTGGGGG
GCGTTGAATGTTAACAAGAAATTGTTACACGCTTGACGAAAGGAGCAAGA
GCATGAGCGCGAGAAGGGTGGGGATGGAGGGAGGATAGGAGAAGAGAGAA
GTGTGAAGGACAAGAAAGGGATGGAGGCAGGGGGGTCAAAAGAAGATATG
GCGACGGAAGAAAAGGAGAAATTAATCAAGGAGAACAAGACCGAAAAGAC
GACGAAGAAGAAGAAGTCGCTTGTGGTGGTAGCTGATGAGGAGATGCAGG
TGAAGGAGGGCAACGGTGGTGCTGGTATCAGAGCAGACTTTATCGTCATG
GCGGCGGCCGAGGCTAAAGCAC
back to top

protein sequence of jgi.p|Nanoce1779_2|585984

>mRNA_3966-protein ID=mRNA_3966-protein|Name=jgi.p|Nanoce1779_2|585984|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MLEARLEKESISVREEALKTASVHGRMPLHLAAMAGSVRVVELLLSYGAD
ANAFSQNETPLHLSSNERVAKTLLVGGADPSIPHKQTKEVALHVAIRRRD
ICSVQTLLERPRHRRSINERDVDWTTLLHLA*
back to top

mRNA from alignment at scaffold_8:519995..521416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3966 ID=mRNA_3966|Name=jgi.p|Nanoce1779_2|585984|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp|location=Sequence derived from alignment at scaffold_8:519995..521416- (Nannochloropsis oceanica)
CAAAAAACAATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGG
GAAGGCCAAACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCC
AGAAGCGGTGACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCC
TCCCTTCCTTCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCC
GCCCTCCGATCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATAC
CTCCTTGGACCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAAT
CCGATGAGCTCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATA
TCAGTACGAGAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCC
TTTACACCTGGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGC
TCTCTTACGGCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTC
CATCTGAGCAGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGC
CGACCCTTCCATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAG
CCATCCGACGTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCT
CGTCACCGGCGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCT
CCATCTCGCCTGAGGCGTCGGTCTACTCGATGCTGTCGTCCTACTCCTTG
ACTACGAGGCGCATAAAGAAGCCATGGATAAGGAAGGGCTGCGCCCGCTC
CATGTCATATATTCGTCGATCGATCAGCTCGCAACGGGACCTGACATCGT
CAAGCACCTTTATGGACGCAGGCGTGGATGGGGCAGGACGCACGTCGCAG
GGAAGACACCATTACATCTATTATGCGAGAACAAGAAACGGTTTGAGTCT
TTTTCGGGGGAGGTGTGTGAGATGGCAAGAATGTTGCTGCGGAAGAGAGG
AGTTTCAGTTGGTATGGTAGAAAAGGACGGAACGACTCCATTGATGTTGA
CAACTCGTAATGAGTTGTGGGGGTTGTGCGACCTACTGACGGAGTGGGGG
GCGTTGAATGTTAACAAGAAATTGTTACACGCTTGACGAAAGGAGCAAGA
GCATGAGCGCGAGAAGGGTGGGGATGGAGGGAGGATAGGAGAAGAGAGAA
GTGTGAAGGACAAGAAAGGGATGGAGGCAGGGGGGTCAAAAGAAGATATG
GCGACGGAAGAAAAGGAGAAATTAATCAAGGAGAACAAGACCGAAAAGAC
GACGAAGAAGAAGAAGTCGCTTGTGGTGGTAGCTGATGAGGAGATGCAGG
TGAAGGAGGGCAACGGTGGTGCTGGTATCAGAGCAGACTTTATCGTCATG
GCGGCGGCCGAGGCTAAAGCAC
back to top

Coding sequence (CDS) from alignment at scaffold_8:519995..521416-

>mRNA_3966 ID=mRNA_3966|Name=jgi.p|Nanoce1779_2|585984|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_8:519995..521416- (Nannochloropsis oceanica)
ATGCTCGAGGCACGCTTAGAGAAGGAGTCTATATCAGTACGAGAAGAGGC
CCTCAAAACCGCATCTGTCCACGGCCGCATGCCTTTACACCTGGCAGCAA
TGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGCTCTCTTACGGCGCAGAT
GCCAACGCATTCAGTCAAAATGAGACTCCCCTCCATCTGAGCAGCAATGA
AAGGGTTGCGAAAACCCTACTGGTGGGAGGAGCCGACCCTTCCATCCCCC
ACAAGCAAACAAAAGAAGTAGCGCTGCATGTAGCCATCCGACGTCGTGAC
ATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCTCGTCACCGGCGGAGCAT
CAACGAACGCGACGTGGATTGGACCACCCTTCTCCATCTCGCCTGA
back to top
Synonyms
Publications