jgi.p|Nanoce1779_2|586166, mRNA_4018 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586166
Unique NamemRNA_4018
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length653
Alignment locationscaffold_8:645251..646312 -

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Properties
Property NameValue
TranscriptId586252
TrackFilteredModels2
ProteinId586166
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:645251..646312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586166gene_4018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586166mRNA_4018-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4018CDS_4018Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4018 ID=mRNA_4018|Name=jgi.p|Nanoce1779_2|586166|organism=Nannochloropsis oceanica|type=mRNA|length=653bp
ACGACAGGGTTGGTTAAGAAGTGCTGGGACAGAGCCTCCTGGCCGCTCGC
ATCATCATCGGATCATCATCCTCCCCCAAGCCAGAAGCGAAGCCACAATC
CGCAGGTTTCAAGCTTATTGGAAATTATGCCTCTTTACCAACAGCTCATT
ATTGCGCGCGATATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCA
ATGTGCGACTACAATTCTCGGCAGTGGTGGCGCCATGCGCGGAGTAGAAA
ATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAACCGCCGAGCCATG
GAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTCGTCCTACTT
TGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGCTGCGGCTGG
ACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACTCAAGCCGAC
CTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGCAGAGGAGCG
CACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGCAAAAGCTTT
TTCATGAGGAGTAAAAGTGGGGTGAATGAAGGGAGGGGAGGTCGAAGCGG
TGTGGACAAGTCTGCTCGAAAAATAAGCTTTAAAAAATGAAATCGATGCA
TGA
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protein sequence of jgi.p|Nanoce1779_2|586166

>mRNA_4018-protein ID=mRNA_4018-protein|Name=jgi.p|Nanoce1779_2|586166|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MPLYQQLIIARDIAKAPELTNLLKQCATTILGSGGAMRGVENHGIRALSH
RLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFT
LRPKTQADLIRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE*
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mRNA from alignment at scaffold_8:645251..646312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4018 ID=mRNA_4018|Name=jgi.p|Nanoce1779_2|586166|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_8:645251..646312- (Nannochloropsis oceanica)
ACGACAGGGTTGGTTAAGAAGTGCTGGGACAGAGCCTCCTGGCCGCTCGC
ATCATCATCGGATCATCATCCTCCCCCAAGCCAGAAGCGAAGCCACAATC
CGCAGGTTTCAAGCTTATTGGAAATTATGCCTCTTTACCAACAGGTAAGC
ATGTTCACACAGAAGTTTTCATGTAAGCGCTGGTGGTCCCTCATTTTGGT
CCTTCCCTCAACGATGAATGTCTCACATCCCCCCCCCCCTTCCTCTCTCC
CCCCCCTCCCAACTTTTCTTTTGGGAAACTTCAGCTCATTATTGCGCGCG
ATATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCAATGTGCGACT
ACAATTCTCGGCAGTGGTAAGGTCTTGAGGGGTTCTTTGGAGAATGGCCA
TGCGTTATGACGAGAGTGGCATTGAGGAAAGCGGTAGACGGACAACTCAT
CATCTCAACTTTCTCTCGCACAACTTCAGGTGGCGCCATGCGCGGAGTAG
AAAATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAAGTATGTGTGC
TGGGAAGGGAATGTAGTGATGCCTATATTGTATGTGAGCATTGATGTCTC
GCATTGAACTTCCCCCTTAAAAAATACTAGCGCCTGCCCTCTTCTCGCCC
CACCGGAAAATCACGCATGTTCCACTCTCGATCCCCTCTTACACAGCCGC
CGAGCCATGGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTC
GTCCTACTTTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGC
TGCGGCTGGACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACT
CAAGCCGACCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGC
AGAGGAGCGCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGC
AAAAGCTTTTTCATGAGGAGTAAAAGTGGGGTGAATGAAGGGAGGGGAGG
TCGAAGCGGTGTGGACAAGTCTGCTCGAAAAATAAGCTTTAAAAAATGAA
ATCGATGCATGA
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Coding sequence (CDS) from alignment at scaffold_8:645251..646312-

>mRNA_4018 ID=mRNA_4018|Name=jgi.p|Nanoce1779_2|586166|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_8:645251..646312- (Nannochloropsis oceanica)
CCGCCGAGCCATGGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATA
TCTCGTCCTACTTTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGG
GTGCTGCGGCTGGACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAA
GACTCAAGCCGACCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTT
GGGCAGAGGAGCGCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAA
AAGCAAAAGCTTTTTCATGAGGAGTAAGTGGCGCCATGCGCGGAGTAGAA
AATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAACTCATTATTGCG
CGCGATATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCAATGTGC
GACTACAATTCTCGGCAGTGATGCCTCTTTACCAACAGCCGCCGAGCCAT
GGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTCGTCCTACT
TTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGCTGCGGCTG
GACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACTCAAGCCGA
CCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGCAGAGGAGC
GCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGCAAAAGCTT
TTTCATGAGGAGTAAGTGGCGCCATGCGCGGAGTAGAAAATCACGGTATC
AGGGCCCTCAGTCATCGGCTACGAAACTCATTATTGCGCGCGATATTGCT
AAGGCACCAGAGCTAACCAATCTATTAAAGCAATGTGCGACTACAATTCT
CGGCAGTGATGCCTCTTTACCAACAGCCGCCGAGCCATGGAAGAAGAGCA
GAAATACCACTGGCAAGCCCGCTATATCTCGTCCTACTTTGACGCGAGCC
CCAAGGCGGTCAAGGAGGTGGAGCGGGTGCTGCGGCTGGACGAGAACGTG
TTGCGCTTCTTCACGCTGAGGCCAAAGACTCAAGCCGACCTCATCCGGAT
ACGCAGCGGATTTCGGGCAGCGATTTGGGCAGAGGAGCGCACGGTTGAGA
CGGTGGCGGAGAAAGCCCGGGAGCAAAAGCAAAAGCTTTTTCATGAGGAG
TAAGTGGCGCCATGCGCGGAGTAGAAAATCACGGTATCAGGGCCCTCAGT
CATCGGCTACGAAACTCATTATTGCGCGCGATATTGCTAAGGCACCAGAG
CTAACCAATCTATTAAAGCAATGTGCGACTACAATTCTCGGCAGTGATGC
CTCTTTACCAACAGCCGCCGAGCCATGGAAGAAGAGCAGAAATACCACTG
GCAAGCCCGCTATATCTCGTCCTACTTTGACGCGAGCCCCAAGGCGGTCA
AGGAGGTGGAGCGGGTGCTGCGGCTGGACGAGAACGTGTTGCGCTTCTTC
ACGCTGAGGCCAAAGACTCAAGCCGACCTCATCCGGATACGCAGCGGATT
TCGGGCAGCGATTTGGGCAGAGGAGCGCACGGTTGAGACGGTGGCGGAGA
AAGCCCGGGAGCAAAAGCAAAAGCTTTTTCATGAGGAGTAAGTGGCGCCA
TGCGCGGAGTAGAAAATCACGGTATCAGGGCCCTCAGTCATCGGCTACGA
AACTCATTATTGCGCGCGATATTGCTAAGGCACCAGAGCTAACCAATCTA
TTAAAGCAATGTGCGACTACAATTCTCGGCAGTGATGCCTCTTTACCAAC
AG
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Synonyms
Publications