jgi.p|Nanoce1779_2|586548, mRNA_4103 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586548
Unique NamemRNA_4103
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1506
Alignment locationscaffold_8:844365..845999 -

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Properties
Property NameValue
TranscriptId586634
TrackFilteredModels2
ProteinId586548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:844365..845999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586548gene_4103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586548mRNA_4103-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4103CDS_4103Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Nanoce1779_2|586548|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
ACAGCGACTACCTGTACCAAAGTCGCTTCCCATGCCCCCACGACCAATTT
ACACCGCCACAAAAGGCGACCTGTTGCTGGAGCTTTCGCAGAAGGCCGCG
CTAAGACCCTGGCTTGCCAAGCTGGGCCTACCGACGCCTGTTCAACTCGA
TCGAGGCACCCAGACTTGTTTTAGCTCGCCGCCTCTTGCAGGACGTCCAA
TCACACTTGTCGGACCGCAGAATGCAGCAGCAGGCACTATTGATGCCCTG
TCCATCATCTTCACTCAAAAACTCGGCGCAAAGCTTAGTGGACCATCCAG
CTCCAACGTGCTCGTGGACACGACATGGGTGCGCTCGCCCGCGGACGTCT
CCACATTGGCGATGCAGGTTCTCCAACCTCTTGCAGCTCGTAGGCTCAAG
CATGGGCGGATTGTGCTTCTTTCTTCACATATGCCAGGGGACGTCATGTC
TACCTCTTTATCCTCGGGGCTCGCATCACTAGTACGGTCATTTGCCAAAG
AAATGGGGCCAACCGGAACCAATGTCAACATTGTGAATATGCGAGGATCT
TTCCATTCCACCTCGTCGTTGTCCACCTCCTTTCTCTCCTCTCCCTTCTC
CCTCTCTCCTTCTCCGGACTCCCTCGCCCTCGTCGCCTGGCCTTTGGCCT
TCCTCCTCCTTCCCGACGCGGCATTTATCACCGGGCAAGAATTCATAATA
AACGTTGAAGGGCTCCTAAACGGCAAAAGCTGCCTTGTCACTGGGAGCAG
TCGTGGAATCGGCGAAGCCATCACTTTACGCCTGGCCAGGGAGGGTGCGC
GGGTTATAGGTGTGGACTTGCCTGGTACCTCCACTCAGTTACAAGCGCTG
ATGGACCGTGTGGGAGGGGTGGGATTGCCGTTGGATTTAACAGTTGAAGG
CGTTGAGGAGAGGCTGAAAGAGTTAGTGAGGAAGGAAGGGAATGGAGGGA
AGATTGACTGTCTTGTCCATAACGCGGGGTTGACGAAAGATAAAACGTTG
AGGCGAATGACGCCCGAGCAATTCCATCAAGTAGTCAAAGTCAACCTCGA
AGCAGTCTTGAATATCAACAAAGCCTTCGGTTTGGCCTACCAGGACGAGC
AGGAGGGAGGGGCGATCGGCCAGGACGAAGAATTTCTCAATCCTGGAGGA
CGCATCGTCCTCCTTTCCTCCATTAATGGCATTGCGGGGGGGTTCGGGCA
AACCAACTACTCATTTACCAAAGCTGCTCTCTCCTCGTACGCCCAGTCAC
TCGCTCCCATCTTAGCCTCCCGCGGGCCTTCCGGCTCCACTATCAATGCC
ATCGCCCCTGGTTTCATCGAGACAGACATGACGCAGAGCATACCTGCCTT
GGGAAAGTTCTTGGGAAGGAGGGCGAATGCCTTTTCACAGGGGGGGTTGG
CGGATGATGTTGCGGCCGTGGTGGCGTTCTTGTGCTGTGACGGGAGTGGG
GGAATGAGCGGGCAGACGTTGAGGGTGTGTGGGCTAAATGCGGTTGGAAA
GTAAGG
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protein sequence of jgi.p|Nanoce1779_2|586548

>mRNA_4103-protein ID=mRNA_4103-protein|Name=jgi.p|Nanoce1779_2|586548|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MPPRPIYTATKGDLLLELSQKAALRPWLAKLGLPTPVQLDRGTQTCFSSP
PLAGRPITLVGPQNAAAGTIDALSIIFTQKLGAKLSGPSSSNVLVDTTWV
RSPADVSTLAMQVLQPLAARRLKHGRIVLLSSHMPGDVMSTSLSSGLASL
VRSFAKEMGPTGTNVNIVNMRGSFHSTSSLSTSFLSSPFSLSPSPDSLAL
VAWPLAFLLLPDAAFITGQEFIINVEGLLNGKSCLVTGSSRGIGEAITLR
LAREGARVIGVDLPGTSTQLQALMDRVGGVGLPLDLTVEGVEERLKELVR
KEGNGGKIDCLVHNAGLTKDKTLRRMTPEQFHQVVKVNLEAVLNINKAFG
LAYQDEQEGGAIGQDEEFLNPGGRIVLLSSINGIAGGFGQTNYSFTKAAL
SSYAQSLAPILASRGPSGSTINAIAPGFIETDMTQSIPALGKFLGRRANA
FSQGGLADDVAAVVAFLCCDGSGGMSGQTLRVCGLNAVGK*
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mRNA from alignment at scaffold_8:844365..845999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Nanoce1779_2|586548|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_8:844365..845999- (Nannochloropsis oceanica)
ACAGCGACTACCTGTACCAAAGTCGCTTCCCATGCCCCCACGACCAATTT
ACACCGCCACAAAAGGCGACCTGTTGCTGGAGCTTTCGCAGAAGGCCGCG
CTAAGACCCTGGCTTGCCAAGCTGGGCCTACCGACGCCTGTTCAACTCGA
TCGAGGCACCCAGACTTGTTTTAGCTCGCCGCCTCTTGCAGGACGTCCAA
TCACACTTGTCGGACCGCAGAATGCAGCAGCAGGCACTATTGATGCCCTG
TCCATCATCTTCACTCAAAAACTCGGCGCAAAGCTTAGTGGACCATCCAG
CTCCAACGTGCTCGTGGACACGACATGGGTGCGCTCGCCCGCGGACGTCT
CCACATTGGCGATGCAGGTTCTCCAACCTCTTGCAGCTCGTAGGCTCAAG
CATGGGCGGATTGTGCTTCTTTCTTCACATATGCCAGGGGACGTCATGTC
TACCTCTTTATCCTCGGGGCTCGCATCACTAGTACGGTCATTTGCCAAAG
AAATGGGGCCAACCGGAACCAATGTCAACATTGTGAATATGCGAGGATCT
TTCCATTCCACCTCGTCGTTGTCCACCTCCTTTCTCTCCTCTCCCTTCTC
CCTCTCTCCTTCTCCGGACTCCCTCGCCCTCGTCGCCTGGCCTTTGGCCT
TCCTCCTCCTTCCCGACGCGGCATTTATCACCGGGCAAGAATTCATAATA
AACGTTGGTACGTCCTCTACCGCCACTGCGGCGACTGATACTACTGCAGC
CATGTCTCGGTGGCTTGAGAACCTACCTCCTTCTTCTTCCACTTCCTCCT
CTTCCTCCTCCTCCTCTTTCTCCTCCTCATCAAAAGAAGGGCTCCTAAAC
GGCAAAAGCTGCCTTGTCACTGGGAGCAGTCGTGGAATCGGCGAAGCCAT
CACTTTACGCCTGGCCAGGGAGGGTGCGCGGGTTATAGGTGTGGACTTGC
CTGGTACCTCCACTCAGTTACAAGCGCTGATGGACCGTGTGGGAGGGGTG
GGATTGCCGTTGGATTTAACAGTTGAAGGCGTTGAGGAGAGGCTGAAAGA
GTTAGTGAGGAAGGAAGGGAATGGAGGGAAGATTGACTGTCTTGTCCATA
ACGCGGGGTTGACGAAAGATAAAACGTTGAGGCGAATGACGCCCGAGCAA
TTCCATCAAGTAGTCAAAGTCAACCTCGAAGCAGTCTTGAATATCAACAA
AGCCTTCGGTTTGGCCTACCAGGACGAGCAGGAGGGAGGGGCGATCGGCC
AGGACGAAGAATTTCTCAATCCTGGAGGACGCATCGTCCTCCTTTCCTCC
ATTAATGGCATTGCGGGGGGGTTCGGGCAAACCAACTACTCATTTACCAA
AGCTGCTCTCTCCTCGTACGCCCAGTCACTCGCTCCCATCTTAGCCTCCC
GCGGGCCTTCCGGCTCCACTATCAATGCCATCGCCCCTGGTTTCATCGAG
ACAGACATGACGCAGAGCATACCTGCCTTGGGAAAGTTCTTGGGAAGGAG
GGCGAATGCCTTTTCACAGGGGGGGTTGGCGGATGATGTTGCGGCCGTGG
TGGCGTTCTTGTGCTGTGACGGGAGTGGGGGAATGAGCGGGCAGACGTTG
AGGGTGTGTGGGCTAAATGCGGTTGGAAAGTAAGG
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Coding sequence (CDS) from alignment at scaffold_8:844365..845999-

>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Nanoce1779_2|586548|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_8:844365..845999- (Nannochloropsis oceanica)
AAGGGCTCCTAAACGGCAAAAGCTGCCTTGTCACTGGGAGCAGTCGTGGA
ATCGGCGAAGCCATCACTTTACGCCTGGCCAGGGAGGGTGCGCGGGTTAT
AGGTGTGGACTTGCCTGGTACCTCCACTCAGTTACAAGCGCTGATGGACC
GTGTGGGAGGGGTGGGATTGCCGTTGGATTTAACAGTTGAAGGCGTTGAG
GAGAGGCTGAAAGAGTTAGTGAGGAAGGAAGGGAATGGAGGGAAGATTGA
CTGTCTTGTCCATAACGCGGGGTTGACGAAAGATAAAACGTTGAGGCGAA
TGACGCCCGAGCAATTCCATCAAGTAGTCAAAGTCAACCTCGAAGCAGTC
TTGAATATCAACAAAGCCTTCGGTTTGGCCTACCAGGACGAGCAGGAGGG
AGGGGCGATCGGCCAGGACGAAGAATTTCTCAATCCTGGAGGACGCATCG
TCCTCCTTTCCTCCATTAATGGCATTGCGGGGGGGTTCGGGCAAACCAAC
TACTCATTTACCAAAGCTGCTCTCTCCTCGTACGCCCAGTCACTCGCTCC
CATCTTAGCCTCCCGCGGGCCTTCCGGCTCCACTATCAATGCCATCGCCC
CTGGTTTCATCGAGACAGACATGACGCAGAGCATACCTGCCTTGGGAAAG
TTCTTGGGAAGGAGGGCGAATGCCTTTTCACAGGGGGGGTTGGCGGATGA
TGTTGCGGCCGTGGTGGCGTTCTTGTGCTGTGACGGGAGTGGGGGAATGA
GCGGGCAGACGTTGAGGGTGTGTGGGCTAAATGCGGTTGGAAAGTAAATG
CCCCCACGACCAATTTACACCGCCACAAAAGGCGACCTGTTGCTGGAGCT
TTCGCAGAAGGCCGCGCTAAGACCCTGGCTTGCCAAGCTGGGCCTACCGA
CGCCTGTTCAACTCGATCGAGGCACCCAGACTTGTTTTAGCTCGCCGCCT
CTTGCAGGACGTCCAATCACACTTGTCGGACCGCAGAATGCAGCAGCAGG
CACTATTGATGCCCTGTCCATCATCTTCACTCAAAAACTCGGCGCAAAGC
TTAGTGGACCATCCAGCTCCAACGTGCTCGTGGACACGACATGGGTGCGC
TCGCCCGCGGACGTCTCCACATTGGCGATGCAGGTTCTCCAACCTCTTGC
AGCTCGTAGGCTCAAGCATGGGCGGATTGTGCTTCTTTCTTCACATATGC
CAGGGGACGTCATGTCTACCTCTTTATCCTCGGGGCTCGCATCACTAGTA
CGGTCATTTGCCAAAGAAATGGGGCCAACCGGAACCAATGTCAACATTGT
GAATATGCGAGGATCTTTCCATTCCACCTCGTCGTTGTCCACCTCCTTTC
TCTCCTCTCCCTTCTCCCTCTCTCCTTCTCCGGACTCCCTCGCCCTCGTC
GCCTGGCCTTTGGCCTTCCTCCTCCTTCCCGACGCGGCATTTATCACCGG
GCAAGAATTCATAATAAACGTTGAAGGGCTCCTAAACGGCAAAAGCTGCC
TTGTCACTGGGAGCAGTCGTGGAATCGGCGAAGCCATCACTTTACGCCTG
GCCAGGGAGGGTGCGCGGGTTATAGGTGTGGACTTGCCTGGTACCTCCAC
TCAGTTACAAGCGCTGATGGACCGTGTGGGAGGGGTGGGATTGCCGTTGG
ATTTAACAGTTGAAGGCGTTGAGGAGAGGCTGAAAGAGTTAGTGAGGAAG
GAAGGGAATGGAGGGAAGATTGACTGTCTTGTCCATAACGCGGGGTTGAC
GAAAGATAAAACGTTGAGGCGAATGACGCCCGAGCAATTCCATCAAGTAG
TCAAAGTCAACCTCGAAGCAGTCTTGAATATCAACAAAGCCTTCGGTTTG
GCCTACCAGGACGAGCAGGAGGGAGGGGCGATCGGCCAGGACGAAGAATT
TCTCAATCCTGGAGGACGCATCGTCCTCCTTTCCTCCATTAATGGCATTG
CGGGGGGGTTCGGGCAAACCAACTACTCATTTACCAAAGCTGCTCTCTCC
TCGTACGCCCAGTCACTCGCTCCCATCTTAGCCTCCCGCGGGCCTTCCGG
CTCCACTATCAATGCCATCGCCCCTGGTTTCATCGAGACAGACATGACGC
AGAGCATACCTGCCTTGGGAAAGTTCTTGGGAAGGAGGGCGAATGCCTTT
TCACAGGGGGGGTTGGCGGATGATGTTGCGGCCGTGGTGGCGTTCTTGTG
CTGTGACGGGAGTGGGGGAATGAGCGGGCAGACGTTGAGGGTGTGTGGGC
TAAATGCGGTTGGAAAGTAAATGCCCCCACGACCAATTTACACCGCCACA
AAAGGCGACCTGTTGCTGGAGCTTTCGCAGAAGGCCGCGCTAAGACCCTG
GCTTGCCAAGCTGGGCCTACCGACGCCTGTTCAACTCGATCGAGGCACCC
AGACTTGTTTTAGCTCGCCGCCTCTTGCAGGACGTCCAATCACACTTGTC
GGACCGCAGAATGCAGCAGCAGGCACTATTGATGCCCTGTCCATCATCTT
CACTCAAAAACTCGGCGCAAAGCTTAGTGGACCATCCAGCTCCAACGTGC
TCGTGGACACGACATGGGTGCGCTCGCCCGCGGACGTCTCCACATTGGCG
ATGCAGGTTCTCCAACCTCTTGCAGCTCGTAGGCTCAAGCATGGGCGGAT
TGTGCTTCTTTCTTCACATATGCCAGGGGACGTCATGTCTACCTCTTTAT
CCTCGGGGCTCGCATCACTAGTACGGTCATTTGCCAAAGAAATGGGGCCA
ACCGGAACCAATGTCAACATTGTGAATATGCGAGGATCTTTCCATTCCAC
CTCGTCGTTGTCCACCTCCTTTCTCTCCTCTCCCTTCTCCCTCTCTCCTT
CTCCGGACTCCCTCGCCCTCGTCGCCTGGCCTTTGGCCTTCCTCCTCCTT
CCCGACGCGGCATTTATCACCGGGCAAGAATTCATAATAAACGTTG
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Synonyms
Publications