jgi.p|Nanoce1779_2|629603, mRNA_3894 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629603
Unique Name	mRNA_3894
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1167
Alignment location	scaffold_8:327121..329132 +

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Properties


Property Name	Value
TranscriptId	629689
Track	FilteredModels2
ProteinId	629603

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:327121..329132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629603	gene_3894	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629603	mRNA_3894-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3894	CDS_3894	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:327121..329132+
coding sequence from alignment at scaffold_8:327121..329132+

mRNA sequence

>mRNA_3894 ID=mRNA_3894|Name=jgi.p|Nanoce1779_2|629603|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGGCGACGGCAGGACGGGAGGAATGGGGGTTGGGGAGGGCACAAGATGG
GTTGAATGTAATGATGGGGATGGTGGAACGAGGAGAAGGAGGAGAAAGAA
AGAAAAGGAAAAATGAGGGGTGGATCGATATGAGTCGAAGTCAGAATGTC
TCTCATTTGCTGCCTTCAGCAGCGTCCATAGGGGTCGGGGATGGTCGAGG
GGTAGATTCAGCAGCTTCTGCTGCTGCTAGAAGTGGAGGGAAGGCCTCCC
CTGGTGCTGCAGATAACAAGAAGAGACCAGGGAGTGGTAATAGTGCCACG
AGCAGCAGAAGCAGCGGTAGCAGCAACACTCAGACACGGCAGCTGTACAA
TTTTGAGGGCAGTGCCGTGGTACAGGAAGTAGTTAAAGATTTCAGCCTTA
CATTTGCGTCTATCGCTTTTTCTCCCGCTGTCCTCCCTACTGCTGATTCG
GTCGAAGCGGCTGTAATGGTTCGAGGAATGGGCGAGAGCGGGGACGCGAG
GGTGAGGAGAGGGGTTAGAAAAATCCGGGTATCGTCGGACGAAACGGTGG
CAAAGGTGCTACTTGACTTGCCCCAGTTGGACTGGAACTTAAACTCGAGG
CAATTTTACATTACACTTGACGTGGTGCGAAACGTTCTCTTGGCGCCCCC
GGTGAGGACAGAGGAGGAAGAGGAGGAGGAGCGGATCCGACGGCAACAGC
AGGAGGAACGGAGACTGGCGGAAGCACGGCTGAGAGCCGCGGCTGCCGGG
GAGGGAGGGAAAGAGGGAGTGGTGCCGGAACGGTTGGATTTAAGTAGTCG
CGGGGATAGGGAGGTGTTGAAGGGCTTGGTGGAGACGACGCTGCAGAGAC
TTCACCTTCCTACTCTGCATGAGACGAAGCTGGTGCAGTATTGTGTGGGG
GGAGGCACGTGGAAGGTTAAGGCGGAGGAAGGGGTGTTGACACGGCACGA
TGCGGTTGAGATTGGATTTACGGCGTTCAGTGGTCAGCACGTCTATTTTC
ACGATGGGTCGATGGACTCCACGGTGCAGGTGGAGAGCTTCTGGGTGAGG
AACGTGATGCCTGGGCCTGATTCGGCCTCGTTTTCTGATGATGTGACAAC
GGTAATGGCACCTGTCGTGAAAGACAAGCAACCGTGTCAGCGCCACCCCT
CCTCCTCCTACTTCTAA

protein sequence of jgi.p|Nanoce1779_2|629603

>mRNA_3894-protein ID=mRNA_3894-protein|Name=jgi.p|Nanoce1779_2|629603|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MATAGREEWGLGRAQDGLNVMMGMVERGEGGERKKRKNEGWIDMSRSQNV
SHLLPSAASIGVGDGRGVDSAASAAARSGGKASPGAADNKKRPGSGNSAT
SSRSSGSSNTQTRQLYNFEGSAVVQEVVKDFSLTFASIAFSPAVLPTADS
VEAAVMVRGMGESGDARVRRGVRKIRVSSDETVAKVLLDLPQLDWNLNSR
QFYITLDVVRNVLLAPPVRTEEEEEEERIRRQQQEERRLAEARLRAAAAG
EGGKEGVVPERLDLSSRGDREVLKGLVETTLQRLHLPTLHETKLVQYCVG
GGTWKVKAEEGVLTRHDAVEIGFTAFSGQHVYFHDGSMDSTVQVESFWVR
NVMPGPDSASFSDDVTTVMAPVVKDKQPCQRHPSSSYF*

mRNA from alignment at scaffold_8:327121..329132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3894 ID=mRNA_3894|Name=jgi.p|Nanoce1779_2|629603|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at scaffold_8:327121..329132+ (Nannochloropsis oceanica)
ATGGCGACGGCAGGACGGGAGGAATGGGGGTTGGGGAGGGCACAAGATGG
GTTGAATGTAATGATGGGGATGGTGGAACGAGGAGAAGGAGGAGAAAGAA
AGAAAAGGAAAAATGAGGGGTGGATCGATATGAGTCGAAGTCAGAATGTC
TCTCATTTGCTGCCTTCAGCAGCGTCCATAGGGGTCGGGGATGGTCGAGG
GGTAGATTCAGCAGCTTCTGCTGCTGCTAGAAGTGGAGGGAAGGCCTCCC
CTGGTGCTGCAGATAACAAGAAGAGACCAGGGAGTGGTAATAGTGCCACG
AGCAGCAGAAGCAGCGGTAGCAGCAACACTCAGACACGGCAGCTGTACAA
TTTTGAGGGCAGTGCCGTGGTACAGGAAGTAGTTAAAGATTTCAGCCTTA
CATTTGCGTCTATCGCTTTTTCTCCCGCTGTCCTCCCTACTGCTGATTCG
GTCGAAGCGGCTGTAATGGTTCGAGGAATGGGCGAGAGCGGGGACGCGAG
GGTGAGGAGAGGGGTTAGAAAAATCCGGGTATCGTCGGACGAAACGGTGG
CAAAGGTGCTACTTGACTTGCCCCAGTTGGACTGGAACTTAAACTCGAGG
CAATTTTACATTACACTTGACGTGGTGCGAAACGTTCTCTTGGCGCCCCC
GGTGAGGACAGAGGAGGAAGAGGAGGAGGAGCGGATCCGACGGCAACAGC
AGGAGGAACGGAGACTGGCGGAAGCACGGCTGAGAGCCGCGGCTGCCGGG
GAGGGAGGGAAAGAGGGAGTGGTGCCGGAACGGTTGGATTTAAGTAGTCG
CGGGGATAGGGAGGTGTTGAAGGGCTTGGTGGAGACGACGCTGCAGAGAC
TTCACCTTCCTACTCTGCATGAGACGAAGCTGGTGCAGTATTGTGTGGGG
GGAGGCACGTGGAAGGTTAAGGCGGAGGAAGGGGTGTTGACACGGCACGA
TGCGGTTGAGATTGGATTTACGGCGTTCAGTGGTCAGCACGTCTATTTTC
ACGATGGGTCGATGGACTCCACGGTGCAGGTGGAGAGCTTCTGGGTGAGG
AACGTGATGCCTGGGCCTGATTCGGCCTCGTTTTCTGATGATGTGACAAC
GGTAATGGCACCTGTCGTGAAAGACAAGCAACCGTGTCAGCGGTGTGGGC
GTGCCTTTGAGGAAGAGGGAAATCGGCCGGGGAGTTGTGTGTTCCATGGG
TGTGAGGATGGGACGCCGGGAGAATTTCGGTTGATTACCGAAGAGGAGAT
TGAGCGACAGACGGCCATTGAGCAGGGGGAGGACAGGACAGGGAGAGAGG
ATGAAGAGGGGGAGAAAATGAGTTCGTCAGTATCGCCCGTAGCAGAAGTG
GAAATGGCAGAGAGCTCCAGTCCTCCTCCTCCTCCTCCTTCATTGACCAG
TTACTCGAGCAGTCTGCACCGTCATTCCAATTTTCAAAATCTCAAAGCGC
TCCCTCCCACCACCGGCCGTTGGACTTGCTGTAAAGCGACGTATGAAACT
GCCCCAGGTTGTCGCGCGCGTGCCCATGTCGCAAAGGAGGTGATGCTATC
GGTAAGAGCTAAGGGTAATGCTCCCTTGGTCGTTGCTGGTTTGGAGATCC
ACCCTTATCAGTTTATGGAGATCTCGATTTTCCCAGGAGCTGACTATAAG
CTCACGTTCCAGCTGACTAGAAACATTGTTGAAGTGTTTCATGCGTATTT
CTTGACGCAGGATGGAGAGGGAGGGAGAGAGGTAGGGCGAGGTGGAGGTG
ATGGGGATGAGGTGCAACAGACGACGAACTTGCTGTTTGGGAAGAATGCG
GTCGAGTCAAAGCATAAGGCGATTCAAGAGAAGAAGGGGACGTCACTGAC
CGATCGATTTTTCAACAAATCCTACAACGGTGGCGCTACTTCCTCCCCTT
CCACCTCTTCCTCCTTCTCTCCTCCGCGCTCTTCCCCCCGCACGGGGGGG
GGCTTACCCTCCCTTTCTACCTCCACTATTTCCGCAGCCACCCCTCCTCC
TCCTACTTCTAA

Coding sequence (CDS) from alignment at scaffold_8:327121..329132+

>mRNA_3894 ID=mRNA_3894|Name=jgi.p|Nanoce1779_2|629603|organism=Nannochloropsis oceanica|type=CDS|length=2334bp|location=Sequence derived from alignment at scaffold_8:327121..329132+ (Nannochloropsis oceanica)
ATGGCGACGGCAGGACGGGAGGAATGGGGGTTGGGGAGGGCACAAGATGG
GTTGAATGTAATGATGGGGATGGTGGAACGAGGAGAAGGAGGAGAAAGAA
AGAAAAGGAAAAATGAGGGGTGGATCGATATGAGTCGAAGTCAGAATGTC
TCTCATTTGCTGCCTTCAGCAGCGTCCATAGGGGTCGGGGATGGTCGAGG
GGTAGATTCAGCAGCTTCTGCTGCTGCTAGAAGTGGAGGGAAGGCCTCCC
CTGGTGCTGCAGATAACAAGAAGAGACCAGGGAGTGGTAATAGTGCCACG
AGCAGCAGAAGCAGCGGTAGCAGCAACACTCAGACACGGCAGCTGTACAA
TTTTGAGGGCAGTGCCGTGGTACAGGAAGTAGTTAAAGATTTCAGCCTTA
CATTTGCGTCTATCGCTTTTTCTCCCGCTGTCCTCCCTACTGCTGATTCG
GTCGAAGCGGCTGTAATGGTTCGAGGAATGGGCGAGAGCGGGGACGCGAG
GGTGAGGAGAGGGGTTAGAAAAATCCGGGTATCGTCGGACGAAACGGTGG
CAAAGGTGCTACTTGACTTGCCCCAGTTGGACTGGAACTTAAACTCGAGG
CAATTTTACATTACACTTGACGTGGTGCGAAACGTTCTCTTGGCGCCCCC
GGTGAGGACAGAGGAGGAAGAGGAGGAGGAGCGGATCCGACGGCAACAGC
AGGAGGAACGGAGACTGGCGGAAGCACGGCTGAGAGCCGCGGCTGCCGGG
GAGGGAGGGAAAGAGGGAGTGGTGCCGGAACGGTTGGATTTAAGTAGTCG
CGGGGATAGGGAGGTGTTGAAGGGCTTGGTGGAGACGACGCTGCAGAGAC
TTCACCTTCCTACTCTGCATGAGACGAAGCTGGTGCAGTATTGTGTGGGG
GGAGGCACGTGGAAGGTTAAGGCGGAGGAAGGGGTGTTGACACGGCACGA
TGCGGTTGAGATTGGATTTACGGCGTTCAGTGGTCAGCACGTCTATTTTC
ACGATGGGTCGATGGACTCCACGGTGCAGGTGGAGAGCTTCTGGGTGAGG
AACGTGATGCCTGGGCCTGATTCGGCCTCGTTTTCTGATGATGTGACAAC
GGTAATGGCACCTGTCGTGAAAGACAAGCAACCGTGTCAGCGCCACCCCT
CCTCCTCCTACTTCTAAATGGCGACGGCAGGACGGGAGGAATGGGGGTTG
GGGAGGGCACAAGATGGGTTGAATGTAATGATGGGGATGGTGGAACGAGG
AGAAGGAGGAGAAAGAAAGAAAAGGAAAAATGAGGGGTGGATCGATATGA
GTCGAAGTCAGAATGTCTCTCATTTGCTGCCTTCAGCAGCGTCCATAGGG
GTCGGGGATGGTCGAGGGGTAGATTCAGCAGCTTCTGCTGCTGCTAGAAG
TGGAGGGAAGGCCTCCCCTGGTGCTGCAGATAACAAGAAGAGACCAGGGA
GTGGTAATAGTGCCACGAGCAGCAGAAGCAGCGGTAGCAGCAACACTCAG
ACACGGCAGCTGTACAATTTTGAGGGCAGTGCCGTGGTACAGGAAGTAGT
TAAAGATTTCAGCCTTACATTTGCGTCTATCGCTTTTTCTCCCGCTGTCC
TCCCTACTGCTGATTCGGTCGAAGCGGCTGTAATGGTTCGAGGAATGGGC
GAGAGCGGGGACGCGAGGGTGAGGAGAGGGGTTAGAAAAATCCGGGTATC
GTCGGACGAAACGGTGGCAAAGGTGCTACTTGACTTGCCCCAGTTGGACT
GGAACTTAAACTCGAGGCAATTTTACATTACACTTGACGTGGTGCGAAAC
GTTCTCTTGGCGCCCCCGGTGAGGACAGAGGAGGAAGAGGAGGAGGAGCG
GATCCGACGGCAACAGCAGGAGGAACGGAGACTGGCGGAAGCACGGCTGA
GAGCCGCGGCTGCCGGGGAGGGAGGGAAAGAGGGAGTGGTGCCGGAACGG
TTGGATTTAAGTAGTCGCGGGGATAGGGAGGTGTTGAAGGGCTTGGTGGA
GACGACGCTGCAGAGACTTCACCTTCCTACTCTGCATGAGACGAAGCTGG
TGCAGTATTGTGTGGGGGGAGGCACGTGGAAGGTTAAGGCGGAGGAAGGG
GTGTTGACACGGCACGATGCGGTTGAGATTGGATTTACGGCGTTCAGTGG
TCAGCACGTCTATTTTCACGATGGGTCGATGGACTCCACGGTGCAGGTGG
AGAGCTTCTGGGTGAGGAACGTGATGCCTGGGCCTGATTCGGCCTCGTTT
TCTGATGATGTGACAACGGTAATGGCACCTGTCGTGAAAGACAAGCAACC
GTGTCAGCGCCACCCCTCCTCCTCCTACTTCTAA

Synonyms

Publications