jgi.p|Nanoce1779_2|629913, mRNA_4662 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629913
Unique NamemRNA_4662
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length561
Alignment locationscaffold_9:325065..325957 -

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Properties
Property NameValue
TranscriptId629999
TrackFilteredModels2
ProteinId629913
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:325065..325957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629913gene_4662Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629913mRNA_4662-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4662CDS_4662Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4662 ID=mRNA_4662|Name=jgi.p|Nanoce1779_2|629913|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
ACAGTACGAGCTGGGGCAGCCGTATGGGGTCACAACCACCTCCTTCATCC
ACATCGCCACATGCATCATTACCCTTTGCCTCGTCGGACGCGGCGACTTT
GATGCAGGAGAAGCTAGACTGCCTGGCGTTAGCGACCTTTAATGCCGTCT
TGTTTGTCTCCCGGGCTGAACGAAGGCAAACACTTGAGGGCGGACACAGC
GGAAAGGCGTCGCAATTGGGATATGAGATTGGCACCCTTCTCCGAGAAAT
TGAGGAAGTGATCGAAATTTTGCCAGTCATTCCACCCCTTGCCAGAGGCG
CAGATGAGCAAACCAACAGTGTCGTTGAAACTCAGAAGCGGCTCAAGGAG
CTGCAGGCGGAGTACGAGCGAGTTCATCACGAACTTAGAGAGACTGTCAG
TGAGGCAGGAACGATGTCGAAAAAGCTTAGGAACATCTTAGTGTACTACA
AATAATCAATAAGAAAAGGGGGATGGAAGAGATAGGCAGGGACGTAACTG
CAACAATATGCGAGAAATCGAAAACGAAAATTTAAAGAAGCTATTCATCC
TGTAATCGAGC
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protein sequence of jgi.p|Nanoce1779_2|629913

>mRNA_4662-protein ID=mRNA_4662-protein|Name=jgi.p|Nanoce1779_2|629913|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MGSQPPPSSTSPHASLPFASSDAATLMQEKLDCLALATFNAVLFVSRAER
RQTLEGGHSGKASQLGYEIGTLLREIEEVIEILPVIPPLARGADEQTNSV
VETQKRLKELQAEYERVHHELRETVSEAGTMSKKLRNILVYYK*
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mRNA from alignment at scaffold_9:325065..325957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4662 ID=mRNA_4662|Name=jgi.p|Nanoce1779_2|629913|organism=Nannochloropsis oceanica|type=mRNA|length=893bp|location=Sequence derived from alignment at scaffold_9:325065..325957- (Nannochloropsis oceanica)
ACAGTACGAGCTGGGGCAGCCGTATGGGGTCACAACCACCTCCTTCATCC
ACATCGCCACATGCATCATTACCCTTTGCCTCGTCGGACGCGGCGACTTT
GATGCAGGAGAAGCTAGACTGCCTGGCGTTAGCGACCTTTAATGCCGTCT
TGTTTGTCTCCCGGGCTGAACGAAGGCAAACACTTGAGGGCGGACACAGC
GGAAAGGTACGGTAGGACAAGTAGGGTACGGTAGGACAAGTAGACATTTT
GATACTTAAGGAGGAACGAGATGCGGGTAGCCAAAAGTGTGCTGGCAGCA
CTGGTGCCTCTGTTGCATATGTACGTGTGGCACATAAGTGTGATGGACTT
TTTGATCAATTTAGGTACTCGTATGGTTTTCCTACCCACACAGGCGTCGC
AATTGGGATATGAGATTGGCACCCTTCTCCGAGAAATTGAGGAAGTGATC
GAAATTTTGCCAGTCATTCCACCCCTTGCCAGAGGCGCAGAGTAAGTAAG
TCCTTCTTTTATTTGATGTTTTAATCTGAGCATATTTGTGGCGTTCTGAT
GTTGCTTGTTTGCATGAAATCTAACTTGCTATTGTGCCTCGCCCTTGCCG
TCTCTCTTCTTACATCCACCTACCCCTTGTTCTTAGTGAGCAAACCAACA
GTGTCGTTGAAACTCAGAAGCGGCTCAAGGAGCTGCAGGCGGAGTACGAG
CGAGTTCATCACGAACTTAGAGAGACTGTCAGTGAGGCAGGAACGATGTC
GAAAAAGCTTAGGAACATCTTAGTGTACTACAAATAATCAATAAGAAAAG
GGGGATGGAAGAGATAGGCAGGGACGTAACTGCAACAATATGCGAGAAAT
CGAAAACGAAAATTTAAAGAAGCTATTCATCCTGTAATCGAGC
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Coding sequence (CDS) from alignment at scaffold_9:325065..325957-

>mRNA_4662 ID=mRNA_4662|Name=jgi.p|Nanoce1779_2|629913|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_9:325065..325957- (Nannochloropsis oceanica)
TGAGCAAACCAACAGTGTCGTTGAAACTCAGAAGCGGCTCAAGGAGCTGC
AGGCGGAGTACGAGCGAGTTCATCACGAACTTAGAGAGACTGTCAGTGAG
GCAGGAACGATGTCGAAAAAGCTTAGGAACATCTTAGTGTACTACAAATA
AGCGTCGCAATTGGGATATGAGATTGGCACCCTTCTCCGAGAAATTGAGG
AAGTGATCGAAATTTTGCCAGTCATTCCACCCCTTGCCAGAGGCGCAGAA
TGGGGTCACAACCACCTCCTTCATCCACATCGCCACATGCATCATTACCC
TTTGCCTCGTCGGACGCGGCGACTTTGATGCAGGAGAAGCTAGACTGCCT
GGCGTTAGCGACCTTTAATGCCGTCTTGTTTGTCTCCCGGGCTGAACGAA
GGCAAACACTTGAGGGCGGACACAGCGGAAAGTGAGCAAACCAACAGTGT
CGTTGAAACTCAGAAGCGGCTCAAGGAGCTGCAGGCGGAGTACGAGCGAG
TTCATCACGAACTTAGAGAGACTGTCAGTGAGGCAGGAACGATGTCGAAA
AAGCTTAGGAACATCTTAGTGTACTACAAATAAGCGTCGCAATTGGGATA
TGAGATTGGCACCCTTCTCCGAGAAATTGAGGAAGTGATCGAAATTTTGC
CAGTCATTCCACCCCTTGCCAGAGGCGCAGAATGGGGTCACAACCACCTC
CTTCATCCACATCGCCACATGCATCATTACCCTTTGCCTCGTCGGACGCG
GCGACTTTGATGCAGGAGAAGCTAGACTGCCTGGCGTTAGCGACCTTTAA
TGCCGTCTTGTTTGTCTCCCGGGCTGAACGAAGGCAAACACTTGAGGGCG
GACACAGCGGAAAGTGAGCAAACCAACAGTGTCGTTGAAACTCAGAAGCG
GCTCAAGGAGCTGCAGGCGGAGTACGAGCGAGTTCATCACGAACTTAGAG
AGACTGTCAGTGAGGCAGGAACGATGTCGAAAAAGCTTAGGAACATCTTA
GTGTACTACAAATAAGCGTCGCAATTGGGATATGAGATTGGCACCCTTCT
CCGAGAAATTGAGGAAGTGATCGAAATTTTGCCAGTCATTCCACCCCTTG
CCAGAGGCGCAGAATGGGGTCACAACCACCTCCTTCATCCACATCGCCAC
ATGCATCATTACCCTTTGCCTCGTCGGACGCGGCGACTTTGATGCAGGAG
AAGCTAGACTGCCTGGCGTTAGCGACCTTTAATGCCGTCTTGTTTGTCTC
CCGGGCTGAACGAAGGCAAACACTTGAGGGCGGACACAGCGGAAAG
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Synonyms
Publications