jgi.p|Nanoce1779_2|588755, mRNA_4328 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588755
Unique NamemRNA_4328
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1070
Alignment locationscaffold_10:308649..309718 -

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Properties
Property NameValue
TranscriptId588841
TrackFilteredModels2
ProteinId588755
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:308649..309718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588755gene_4328Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588755mRNA_4328-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4328CDS_4328Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4328 ID=mRNA_4328|Name=jgi.p|Nanoce1779_2|588755|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp
GGAGCAGGGGTCGGGGGAGAAATTGATGGCTTCCCATTGATGTGGCGCCG
GGACCGGGCTCTGGCTCGAAGCCAACAGTTGGAAGAGGCTTTGGCGAGTG
TGAGTTGCACGGGAGGGAACCTGGCATTAGAGCTGTCAGATTCAGGTTTA
GTGGCTTTGCAACGGTTGACAGAAGATGTTAATTTGCTGAGTGTGTTGTA
TCGACCGTGCTTGTCGGCGGAAGAGGTGCATAGGTGCGGATTGCCGGAGT
GGATGGCCGAGGGCGAAACGGAGGGGGTGAAGGAGGACGAGGAGGAATCA
AGACTAAGACGGACGGCGTCTTTGACGGTCATTCATGGAGGCTTGACGTG
GTATAAACTGGGATTTAGCCAGCATGCGAGTGATGGTGTCCTGGCAGTCG
GATGGGAAAGGGCTTGTATTGGATCGGGGGCGTGGGATTTGGCTTTGCTG
CTAGCGACGGCGCTGTGGGGATATGAGGAGAAGAAGGAGCAGGACAAGGA
CAAAAGCGATGGTCACGCCAACGGCTGCAAACAGCAGAATGCCGAGATGG
CGGCGTTGCGGTTGTACCATCAAGTCTTGATGGAAGGTGAGGTGGAGGAC
TATGACTTTAATCGGCTTTTGTTCGAGTATAAACGGGCACGTGCGGGCCT
AGCACCTGAGCTTTTTGCAGTGCTCGTGCGACTTGCAGAGGATGGCGAAG
GGGAAAAGAGGGACGAGAAAGAGAGGACTGCTTATCAGGCAGCTGTGAAA
GCTGCTTTGGAGGCCTCCCTTGACCTCTTACAGAATTGAATAGCAGCGTT
GAGTAGCAGCCGTGACGAGGATGAATGGAATGTGCATATAATAGCATAAA
TATTAATAGAATAGACTGAAATTAAGAAAGAATGGCTTGCGAACTCGTGA
ACAAACATAGACTTCGATTCAGGCACACGATGTCTTCTTTAAAAAGGAGA
TGACGAGAAGTCGATATTTTCTATATGCTTCTCGGAATGGGGTACAAGGG
CAAATCGAATGGGATGAGGGAAAGATATCATAACAACCGCACCAAACGAA
GAAAGGGCTCATTTGAGAAA
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protein sequence of jgi.p|Nanoce1779_2|588755

>mRNA_4328-protein ID=mRNA_4328-protein|Name=jgi.p|Nanoce1779_2|588755|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MWRRDRALARSQQLEEALASVSCTGGNLALELSDSGLVALQRLTEDVNLL
SVLYRPCLSAEEVHRCGLPEWMAEGETEGVKEDEEESRLRRTASLTVIHG
GLTWYKLGFSQHASDGVLAVGWERACIGSGAWDLALLLATALWGYEEKKE
QDKDKSDGHANGCKQQNAEMAALRLYHQVLMEGEVEDYDFNRLLFEYKRA
RAGLAPELFAVLVRLAEDGEGEKRDEKERTAYQAAVKAALEASLDLLQN*
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mRNA from alignment at scaffold_10:308649..309718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4328 ID=mRNA_4328|Name=jgi.p|Nanoce1779_2|588755|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp|location=Sequence derived from alignment at scaffold_10:308649..309718- (Nannochloropsis oceanica)
GGAGCAGGGGTCGGGGGAGAAATTGATGGCTTCCCATTGATGTGGCGCCG
GGACCGGGCTCTGGCTCGAAGCCAACAGTTGGAAGAGGCTTTGGCGAGTG
TGAGTTGCACGGGAGGGAACCTGGCATTAGAGCTGTCAGATTCAGGTTTA
GTGGCTTTGCAACGGTTGACAGAAGATGTTAATTTGCTGAGTGTGTTGTA
TCGACCGTGCTTGTCGGCGGAAGAGGTGCATAGGTGCGGATTGCCGGAGT
GGATGGCCGAGGGCGAAACGGAGGGGGTGAAGGAGGACGAGGAGGAATCA
AGACTAAGACGGACGGCGTCTTTGACGGTCATTCATGGAGGCTTGACGTG
GTATAAACTGGGATTTAGCCAGCATGCGAGTGATGGTGTCCTGGCAGTCG
GATGGGAAAGGGCTTGTATTGGATCGGGGGCGTGGGATTTGGCTTTGCTG
CTAGCGACGGCGCTGTGGGGATATGAGGAGAAGAAGGAGCAGGACAAGGA
CAAAAGCGATGGTCACGCCAACGGCTGCAAACAGCAGAATGCCGAGATGG
CGGCGTTGCGGTTGTACCATCAAGTCTTGATGGAAGGTGAGGTGGAGGAC
TATGACTTTAATCGGCTTTTGTTCGAGTATAAACGGGCACGTGCGGGCCT
AGCACCTGAGCTTTTTGCAGTGCTCGTGCGACTTGCAGAGGATGGCGAAG
GGGAAAAGAGGGACGAGAAAGAGAGGACTGCTTATCAGGCAGCTGTGAAA
GCTGCTTTGGAGGCCTCCCTTGACCTCTTACAGAATTGAATAGCAGCGTT
GAGTAGCAGCCGTGACGAGGATGAATGGAATGTGCATATAATAGCATAAA
TATTAATAGAATAGACTGAAATTAAGAAAGAATGGCTTGCGAACTCGTGA
ACAAACATAGACTTCGATTCAGGCACACGATGTCTTCTTTAAAAAGGAGA
TGACGAGAAGTCGATATTTTCTATATGCTTCTCGGAATGGGGTACAAGGG
CAAATCGAATGGGATGAGGGAAAGATATCATAACAACCGCACCAAACGAA
GAAAGGGCTCATTTGAGAAA
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Coding sequence (CDS) from alignment at scaffold_10:308649..309718-

>mRNA_4328 ID=mRNA_4328|Name=jgi.p|Nanoce1779_2|588755|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_10:308649..309718- (Nannochloropsis oceanica)
ATGTGGCGCCGGGACCGGGCTCTGGCTCGAAGCCAACAGTTGGAAGAGGC
TTTGGCGAGTGTGAGTTGCACGGGAGGGAACCTGGCATTAGAGCTGTCAG
ATTCAGGTTTAGTGGCTTTGCAACGGTTGACAGAAGATGTTAATTTGCTG
AGTGTGTTGTATCGACCGTGCTTGTCGGCGGAAGAGGTGCATAGGTGCGG
ATTGCCGGAGTGGATGGCCGAGGGCGAAACGGAGGGGGTGAAGGAGGACG
AGGAGGAATCAAGACTAAGACGGACGGCGTCTTTGACGGTCATTCATGGA
GGCTTGACGTGGTATAAACTGGGATTTAGCCAGCATGCGAGTGATGGTGT
CCTGGCAGTCGGATGGGAAAGGGCTTGTATTGGATCGGGGGCGTGGGATT
TGGCTTTGCTGCTAGCGACGGCGCTGTGGGGATATGAGGAGAAGAAGGAG
CAGGACAAGGACAAAAGCGATGGTCACGCCAACGGCTGCAAACAGCAGAA
TGCCGAGATGGCGGCGTTGCGGTTGTACCATCAAGTCTTGATGGAAGGTG
AGGTGGAGGACTATGACTTTAATCGGCTTTTGTTCGAGTATAAACGGGCA
CGTGCGGGCCTAGCACCTGAGCTTTTTGCAGTGCTCGTGCGACTTGCAGA
GGATGGCGAAGGGGAAAAGAGGGACGAGAAAGAGAGGACTGCTTATCAGG
CAGCTGTGAAAGCTGCTTTGGAGGCCTCCCTTGACCTCTTACAGAATTGA
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Synonyms
Publications