jgi.p|Nanoce1779_2|588488, mRNA_4246 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588488
Unique Name	mRNA_4246
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	936
Alignment location	scaffold_10:101820..103444 -

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Properties


Property Name	Value
TranscriptId	588574
Track	FilteredModels2
ProteinId	588488

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:101820..103444 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588488	gene_4246	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588488	mRNA_4246-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4246	CDS_4246	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:101820..103444-
coding sequence from alignment at scaffold_10:101820..103444-

mRNA sequence

>mRNA_4246 ID=mRNA_4246|Name=jgi.p|Nanoce1779_2|588488|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ACAGGCCCTCTTTGGAAATGATGTCGCGGGTGCTGTTGCAAGGGATTTTG
GCGCTGTCCTCTACAGCCACGGCATTTGTCACTCCTGCCGCCCGACAAAT
TGGTAGCAGTGCCGCAGCAGCCTTGGCGGAAACTTCCCGCAGTCGCACAG
GTAGCTCCAGCAACAGCTTCATCTCCACCCCTTTTTGGGGAGGGGCTTTG
GCCCTCTCTTCTTCCTCCTGCCTCATGTCCCGGTCTTTGAGCACGCTGAA
ATCGTCCGCGATGGCTGATAGCACTACCAACAGTGACATGAAGCCATGGA
AGATCAACTTGCTCTATGATGGGAAGTGCTCTCTTTGTATGAAGGAGGTT
TCATTTTTGCAGAAGCGAGACATGGAGAACGTCATTCTCTTCACGGACCT
GAATGATCCCAATTTCAAGCCAGAGGAGAACGGAGGGGTGGATTATGAAG
CAGGTATGAAGTACATCCACGCCGTCCTGCCCAATGGTGAGGTCGTCAAG
GGTGTGGAGGTCTTTCGGCGCATCTACGAGGTCATTGGCCTCGGATGGGT
TTATGCGGCAACCAAGCTTCCGCTAATTGGCAGTGCTGCCGATTGGGCCT
ATGACCAATGGGCCATCCGTCGTCTCCAGATCACAGGCCGACCGGACTTG
GAAGTGATACTTCGTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAAGACGC
CGACTGCGAGGATAAGGGGGAGTGCGAGATTGATTGGGACAAGATCTAGA
GAAAGAGAGTTGTTGAGGAGAGAAAGTGTCTTGAGTTTTTTCTGAATGGA
GGTGGAAGTGATGAAGAGATATGTCTGGAGAGGAGGGGACTCGGAGGGCG
TAGGGAGAGGAGGTTTAGAATAAATCGTCAAGTGAGCTTTCCTTTTGTGT
GAAGTAAAAATGAAAAAACATGTTTTGGTATTAATG

protein sequence of jgi.p|Nanoce1779_2|588488

>mRNA_4246-protein ID=mRNA_4246-protein|Name=jgi.p|Nanoce1779_2|588488|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MMSRVLLQGILALSSTATAFVTPAARQIGSSAAAALAETSRSRTGSSSNS
FISTPFWGGALALSSSSCLMSRSLSTLKSSAMADSTTNSDMKPWKINLLY
DGKCSLCMKEVSFLQKRDMENVILFTDLNDPNFKPEENGGVDYEAGMKYI
HAVLPNGEVVKGVEVFRRIYEVIGLGWVYAATKLPLIGSAADWAYDQWAI
RRLQITGRPDLEVILRERQEAAAAKKDADCEDKGECEIDWDKI*

mRNA from alignment at scaffold_10:101820..103444-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4246 ID=mRNA_4246|Name=jgi.p|Nanoce1779_2|588488|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at scaffold_10:101820..103444- (Nannochloropsis oceanica)
ACAGGCCCTCTTTGGAAATGATGTCGCGGGTGCTGTTGCAAGGGATTTTG
GCGCTGTCCTCTACAGCCACGGCATTTGTGTAAGTGTGCATGTGTTTGTA
ACATGGATGTGTATGTTTTTGGGTTGTTCCGGTAGCGTTGGAAGGGTATG
AAAAAGGGCCATACTTGTTCATGAGGATGTCGCCCACCCCACACATCTAC
ACACATACGTACAGCACTCCTGCCGCCCGACAAATTGGTAGCAGTGCCGC
AGCAGCCTTGGCGGAAACTTCCCGCAGTCGCACAGGTAGCTCCAGCAACA
GCTTCATCTCCACCCCTTTTTGGGGAGGGGCTTTGGCCCTCTCTTCTTCC
TCCTGCCTCATGTCCCGGTCTTTGAGCACGCTGAAATCGTCCGCGATGGC
TGATAGCACTACCAACAGTGACATGAAGCCATGGAAGATCAACTTGCTCT
ATGATGGGAAGTGCTCTCTTTGTATGAAGGTACGTTTGACACCCAGAGGA
AAGGATGGGAGGAATGAATAGTAAAGATGGGGCGCCGCGGAATTGTGCTT
ATAGTGCGATGTCGGGGACGAGTTCGGCAGCTGTTTGTATCAAGAGTATC
AGGAGTGTCAGGGAGGCCGTTTCAGTCACCATCTTGCACCACCAGCTTCC
CTCCTCCCCTACCCTCCCTCTCATGCGCCCGCTACCCCAAACTTTATATC
AGGAGGTTTCATTTTTGCAGAAGCGAGACATGGAGAACGTCATTCTCTTC
ACGGACCTGAATGATCCCAATTTCAAGCCAGAGGAGAACGGAGGGGTGGA
TTATGAAGCAGGTCGGTCGGGAGGGAGGGAGGGAGGAAGGGAGGGGGGGG
GGAGGTGTGTTTATGTGTGGAGAGGAGAGGTGTCTTGCTTCAGAAATGTG
GCGGTCAGAGTTTTTAGTGCGGATAGAGCAGAGAGAGGGATAACTTTCTA
ATCTGCAGCGAAATGATGCTATCATGCGAATCCTTGCACTCAATTATACA
CTCACTATCCCTGTGTACACCCCCGTTACATTTGAAACAAAATAGGTATG
AAGTACATCCACGCCGTCCTGCCCAATGGTGAGGTCGTCAAGGGTGTGGA
GGTCTTTCGGCGCATCTACGAGGTCATTGGCCTCGGATGGGTTTATGCGG
CAACCAAGCTTCCGCTAATTGGCAGTGCTGCCGGTACGTTTTTAATTCCA
GCTTTTTTGGCTACAAGCGTGTAAGTGTGGTTTCTAATTTCTTCCCCACA
CACCAAATATCTCACACATCATGCCAATAGATTGGGCCTATGACCAATGG
GCCATCCGTCGTCTCCAGATCACAGGCCGACCGGACTTGGAAGTGATACT
TCGTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAAGACGCCGACTGCGAGG
ATAAGGGGGAGTGCGAGATTGATTGGGACAAGATCTAGAGAAAGAGAGTT
GTTGAGGAGAGAAAGTGTCTTGAGTTTTTTCTGAATGGAGGTGGAAGTGA
TGAAGAGATATGTCTGGAGAGGAGGGGACTCGGAGGGCGTAGGGAGAGGA
GGTTTAGAATAAATCGTCAAGTGAGCTTTCCTTTTGTGTGAAGTAAAAAT
GAAAAAACATGTTTTGGTATTAATG

Coding sequence (CDS) from alignment at scaffold_10:101820..103444-

>mRNA_4246 ID=mRNA_4246|Name=jgi.p|Nanoce1779_2|588488|organism=Nannochloropsis oceanica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_10:101820..103444- (Nannochloropsis oceanica)
ATTGGGCCTATGACCAATGGGCCATCCGTCGTCTCCAGATCACAGGCCGA
CCGGACTTGGAAGTGATACTTCGTGAGCGTCAAGAGGCAGCGGCTGCGAA
GAAAGACGCCGACTGCGAGGATAAGGGGGAGTGCGAGATTGATTGGGACA
AGATCTAGGTATGAAGTACATCCACGCCGTCCTGCCCAATGGTGAGGTCG
TCAAGGGTGTGGAGGTCTTTCGGCGCATCTACGAGGTCATTGGCCTCGGA
TGGGTTTATGCGGCAACCAAGCTTCCGCTAATTGGCAGTGCTGCCGGAGG
TTTCATTTTTGCAGAAGCGAGACATGGAGAACGTCATTCTCTTCACGGAC
CTGAATGATCCCAATTTCAAGCCAGAGGAGAACGGAGGGGTGGATTATGA
AGCAGCACTCCTGCCGCCCGACAAATTGGTAGCAGTGCCGCAGCAGCCTT
GGCGGAAACTTCCCGCAGTCGCACAGGTAGCTCCAGCAACAGCTTCATCT
CCACCCCTTTTTGGGGAGGGGCTTTGGCCCTCTCTTCTTCCTCCTGCCTC
ATGTCCCGGTCTTTGAGCACGCTGAAATCGTCCGCGATGGCTGATAGCAC
TACCAACAGTGACATGAAGCCATGGAAGATCAACTTGCTCTATGATGGGA
AGTGCTCTCTTTGTATGAAGATGATGTCGCGGGTGCTGTTGCAAGGGATT
TTGGCGCTGTCCTCTACAGCCACGGCATTTGTATTGGGCCTATGACCAAT
GGGCCATCCGTCGTCTCCAGATCACAGGCCGACCGGACTTGGAAGTGATA
CTTCGTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAAGACGCCGACTGCGA
GGATAAGGGGGAGTGCGAGATTGATTGGGACAAGATCTAGGTATGAAGTA
CATCCACGCCGTCCTGCCCAATGGTGAGGTCGTCAAGGGTGTGGAGGTCT
TTCGGCGCATCTACGAGGTCATTGGCCTCGGATGGGTTTATGCGGCAACC
AAGCTTCCGCTAATTGGCAGTGCTGCCGGAGGTTTCATTTTTGCAGAAGC
GAGACATGGAGAACGTCATTCTCTTCACGGACCTGAATGATCCCAATTTC
AAGCCAGAGGAGAACGGAGGGGTGGATTATGAAGCAGCACTCCTGCCGCC
CGACAAATTGGTAGCAGTGCCGCAGCAGCCTTGGCGGAAACTTCCCGCAG
TCGCACAGGTAGCTCCAGCAACAGCTTCATCTCCACCCCTTTTTGGGGAG
GGGCTTTGGCCCTCTCTTCTTCCTCCTGCCTCATGTCCCGGTCTTTGAGC
ACGCTGAAATCGTCCGCGATGGCTGATAGCACTACCAACAGTGACATGAA
GCCATGGAAGATCAACTTGCTCTATGATGGGAAGTGCTCTCTTTGTATGA
AGATGATGTCGCGGGTGCTGTTGCAAGGGATTTTGGCGCTGTCCTCTACA
GCCACGGCATTTGTATTGGGCCTATGACCAATGGGCCATCCGTCGTCTCC
AGATCACAGGCCGACCGGACTTGGAAGTGATACTTCGTGAGCGTCAAGAG
GCAGCGGCTGCGAAGAAAGACGCCGACTGCGAGGATAAGGGGGAGTGCGA
GATTGATTGGGACAAGATCTAGGTATGAAGTACATCCACGCCGTCCTGCC
CAATGGTGAGGTCGTCAAGGGTGTGGAGGTCTTTCGGCGCATCTACGAGG
TCATTGGCCTCGGATGGGTTTATGCGGCAACCAAGCTTCCGCTAATTGGC
AGTGCTGCCGGAGGTTTCATTTTTGCAGAAGCGAGACATGGAGAACGTCA
TTCTCTTCACGGACCTGAATGATCCCAATTTCAAGCCAGAGGAGAACGGA
GGGGTGGATTATGAAGCAGCACTCCTGCCGCCCGACAAATTGGTAGCAGT
GCCGCAGCAGCCTTGGCGGAAACTTCCCGCAGTCGCACAGGTAGCTCCAG
CAACAGCTTCATCTCCACCCCTTTTTGGGGAGGGGCTTTGGCCCTCTCTT
CTTCCTCCTGCCTCATGTCCCGGTCTTTGAGCACGCTGAAATCGTCCGCG
ATGGCTGATAGCACTACCAACAGTGACATGAAGCCATGGAAGATCAACTT
GCTCTATGATGGGAAGTGCTCTCTTTGTATGAAGATGATGTCGCGGGTGC
TGTTGCAAGGGATTTTGGCGCTGTCCTCTACAGCCACGGCATTTGTATTG
GGCCTATGACCAATGGGCCATCCGTCGTCTCCAGATCACAGGCCGACCGG
ACTTGGAAGTGATACTTCGTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAA
GACGCCGACTGCGAGGATAAGGGGGAGTGCGAGATTGATTGGGACAAGAT
CTAGGTATGAAGTACATCCACGCCGTCCTGCCCAATGGTGAGGTCGTCAA
GGGTGTGGAGGTCTTTCGGCGCATCTACGAGGTCATTGGCCTCGGATGGG
TTTATGCGGCAACCAAGCTTCCGCTAATTGGCAGTGCTGCCGGAGGTTTC
ATTTTTGCAGAAGCGAGACATGGAGAACGTCATTCTCTTCACGGACCTGA
ATGATCCCAATTTCAAGCCAGAGGAGAACGGAGGGGTGGATTATGAAGCA
GCACTCCTGCCGCCCGACAAATTGGTAGCAGTGCCGCAGCAGCCTTGGCG
GAAACTTCCCGCAGTCGCACAGGTAGCTCCAGCAACAGCTTCATCTCCAC
CCCTTTTTGGGGAGGGGCTTTGGCCCTCTCTTCTTCCTCCTGCCTCATGT
CCCGGTCTTTGAGCACGCTGAAATCGTCCGCGATGGCTGATAGCACTACC
AACAGTGACATGAAGCCATGGAAGATCAACTTGCTCTATGATGGGAAGTG
CTCTCTTTGTATGAAGATGATGTCGCGGGTGCTGTTGCAAGGGATTTTGG
CGCTGTCCTCTACAGCCACGGCATTTGTATTGGGCCTATGACCAATGGGC
CATCCGTCGTCTCCAGATCACAGGCCGACCGGACTTGGAAGTGATACTTC
GTGAGCGTCAAGAGGCAGCGGCTGCGAAGAAAGACGCCGACTGCGAGGAT
AAGGGGGAGTGCGAGATTGATTGGGACAAGATCTAGGTATGAAGTACATC
CACGCCGTCCTGCCCAATGGTGAGGTCGTCAAGGGTGTGGAGGTCTTTCG
GCGCATCTACGAGGTCATTGGCCTCGGATGGGTTTATGCGGCAACCAAGC
TTCCGCTAATTGGCAGTGCTGCCGGAGGTTTCATTTTTGCAGAAGCGAGA
CATGGAGAACGTCATTCTCTTCACGGACCTGAATGATCCCAATTTCAAGC
CAGAGGAGAACGGAGGGGTGGATTATGAAGCAGCACTCCTGCCGCCCGAC
AAATTGGTAGCAGTGCCGCAGCAGCCTTGGCGGAAACTTCCCGCAGTCGC
ACAGGTAGCTCCAGCAACAGCTTCATCTCCACCCCTTTTTGGGGAGGGGC
TTTGGCCCTCTCTTCTTCCTCCTGCCTCATGTCCCGGTCTTTGAGCACGC
TGAAATCGTCCGCGATGGCTGATAGCACTACCAACAGTGACATGAAGCCA
TGGAAGATCAACTTGCTCTATGATGGGAAGTGCTCTCTTTGTATGAAGAT
GATGTCGCGGGTGCTGTTGCAAGGGATTTTGGCGCTGTCCTCTACAGCCA
CGGCATTTGT

Synonyms

Publications