jgi.p|Nanoce1779_2|588552, mRNA_4265 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588552
Unique NamemRNA_4265
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1786
Alignment locationscaffold_10:143919..146091 -

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Properties
Property NameValue
TranscriptId588638
TrackFilteredModels2
ProteinId588552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:143919..146091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588552gene_4265Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588552mRNA_4265-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4265CDS_4265Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4265 ID=mRNA_4265|Name=jgi.p|Nanoce1779_2|588552|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
CAGGCGCGCCACTTTGAGCCCGAAACGTGGCGGGAGGAATTCCCTAGTCT
TGCGGGTAACGGTACCTGTTTGTATTCACAGGACCATGACCCTAACCATC
AGCAGCAGGCCAGGTAGAGCGTCGCGGGCCTCGAGGAGAAGACGGCTCTG
CTTCGCGGCCACGCTCGTGATGAGCGCCGTCGGTGGCACAGCGGCCCTAC
ACCAACCACACCGCCCTTTTGATGCCGAGGTTACGCCCGAAGGGGGAACT
CGGGAGCTCAAACTCGGTGCGTACTGACTGGTGGAATGGTCATGCCCAGC
GGAGGGTCACGGGTGTTGGCAGCGCGTTCTTCTAACGAAAACTCTCATGC
AACAACTCATAGACGAGGCCCTGGCGGGAGAGTGGGGTTTCCGGCTTCTG
GAGCCATTCATGGTCTACAATGAAAGTCATGTCACGCCCCAGAATCATGA
CCCATGGTTTCCGGGCTGCCCTGTCTTTGACAACCTCAACATAAACGCCC
ACTTTGGCTGCCACTTTATCCGACTCTGCAAAGATGTCTTGACTGCTTTT
TGGGTAGATTTTAGCAAGACTGCCAGTACCACGCGACCCCTGAACCCGAA
CGGTCTCCTGCCGCAGATCCTCGCCGATAATCGACCGAATCCACCGCGCC
AAGTGGACCGAACTACCGTCTACGCCGAGCGCCCCACTTACTACTACTGC
TACCGACTGATCTTACTCATGTACTCTATTGCCTTTGAATACGAGAGGAG
CAACATGCAATATAGCCTGCCAAGACTCGTAGACGACTGGGATCAGGAGC
GCTGGTACATGGTCAATTATCTCAAACCGCGAAACATCAACCGGATTGAG
CTTAAGGGACGCCAGTCACCTATAGCAGTTTCCATGATGAAAGGTGACCG
GATGATGATTGTGATTCGTGGTACGATTTGGACGGAGGAGTGGTTCAAGG
ACTTTCAGTACAAGTGGGCGTATGATCCGGAGAACCTGTTCCCAGGCAAG
ACACACGAAGGCATGTACTCTGTATTCATCGATTTTTATAAGGGACTGGA
GGAAGAAGTCGAATTAAAAAAGCCCACACACGTCTTGGTAACGGGCCACA
GCTTAGGGGCAGGATTGGCGAATATGATCGGGTTGCGATTGGAGAACAAC
ATGCAACACAATATGCGCGTGGACGTGGTGGGATTTGGGGGCCCCAACAC
TGGAGACATCGAGTTTGCCGAGGTGTTCCGCAAGACCGTCAATAGCCGAC
ATATTATTTTCCTAGGTCGCGGGAATGAGCCGCACTCGCACATGTACACG
GCAGGCGACATTACTGCGCAATACACCTGCGAGCCTTATCCTGGATGCGA
CATCCTGTCCACGGGTCCCTTTGGGTATTTCTACCATTACATTCGCCCGC
ACAACCAAGTCCCCTTCTATGCCGAAGAAATGCCGAATCCAAAGAAGTGG
AACGAAGTCTCCAACATTAGGCGCATCATTCCTTCGACCAAGGGGGTGAT
TGCTTCGCATCTATGTAGTTACATTTGCTGGACTTCTCAGGCTGTCGGGG
ATTTGGACAGCCGGTGCTATTTTGCAAATGAGCCGGGCCGGCCTGACTTG
CCCCAATCCTACTATTGCGACGTGAGTCAGGTTCCCATATAGGCCATATA
GATTAATGTATATCAGGCTCTTATGTAGACCATATATATTTAGTATATTT
AAGGTAGTACTAGAACGAGGGAGGGAGGGAAGGCGGGACGGCTGGTGGAA
GGGGTCAGGCTGGTTTTGGCAGAATGTACGCGTAAT
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protein sequence of jgi.p|Nanoce1779_2|588552

>mRNA_4265-protein ID=mRNA_4265-protein|Name=jgi.p|Nanoce1779_2|588552|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MQQLIDEALAGEWGFRLLEPFMVYNESHVTPQNHDPWFPGCPVFDNLNIN
AHFGCHFIRLCKDVLTAFWVDFSKTASTTRPLNPNGLLPQILADNRPNPP
RQVDRTTVYAERPTYYYCYRLILLMYSIAFEYERSNMQYSLPRLVDDWDQ
ERWYMVNYLKPRNINRIELKGRQSPIAVSMMKGDRMMIVIRGTIWTEEWF
KDFQYKWAYDPENLFPGKTHEGMYSVFIDFYKGLEEEVELKKPTHVLVTG
HSLGAGLANMIGLRLENNMQHNMRVDVVGFGGPNTGDIEFAEVFRKTVNS
RHIIFLGRGNEPHSHMYTAGDITAQYTCEPYPGCDILSTGPFGYFYHYIR
PHNQVPFYAEEMPNPKKWNEVSNIRRIIPSTKGVIASHLCSYICWTSQAV
GDLDSRCYFANEPGRPDLPQSYYCDVSQVPI*
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mRNA from alignment at scaffold_10:143919..146091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4265 ID=mRNA_4265|Name=jgi.p|Nanoce1779_2|588552|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at scaffold_10:143919..146091- (Nannochloropsis oceanica)
CAGGCGCGCCACTTTGAGCCCGAAACGTGGCGGGAGGAATTCCCTAGTCT
TGCGGGTAACGGTACCTGTTTGTATTCACAGGACCATGACCCTAACCATC
AGCAGCAGGCCAGGTAGAGCGTCGCGGGCCTCGAGGAGAAGACGGCTCTG
CTTCGCGGCCACGCTCGTGATGAGCGCCGTCGGTGGCACAGCGGCCCTAC
ACCAACCACACCGCCCTTTTGATGCCGGTAAGGGCTCATGGAATATGTGG
GTCTGGGTGGTTGCCGAAGGCGGCGCTTCGTTGTGTTAACTTTTTCCGGG
CGTACCGTCGATTGTGGGTTCTCACTTGCGCCTGGGCCATTAAAATATTC
TCACGACTGCCTTTCCCTCCTTTCCATCTAGAGGTTACGCCCGAAGGGGG
AACTCGGGAGCTCAAACTCGGTGCGTACTGACTGGTGGAATGGTCATGCC
CAGCGGAGGGTCACGGGTGTTGGCAGCGCGTTCTTCTAACGAAAACTCTC
ATGCAACAACTCATAGACGAGGCCCTGGCGGGAGAGTGGGGTTTCCGGCT
TCTGGAGCCATTCATGGTCTACAATGAAAGTCATGTCACGCCCCAGAATC
ATGACCCATGGTTTCCGGGCTGCCCTGTCTTTGACAACCTCAACATAAAC
GCCCACTTTGGCTGCCACTTTATCCGACTCTGCAAAGATGGTAAGGTTGA
GTGGATTTCAAAGTAGGATAAAAATTGTCGATCTACTTGTTTCTCGCTCA
TCTTTCACCTCTTTATCGATCGATGAGCGGGTGTTGGTGCTGCTGGTGAG
GAAGCTGCTTACAGGCCTCAGCTATTTTCTATTTCTTCTTAAGGAGTCTC
AATTGCCGACTCACAAACAGAACGCTTTTCTATTCGAACCCGTTCTCTCT
CCCATCCCGCTTACTACCCACAGTCTTGACTGCTTTTTGGGTAGATTTTA
GCAAGACTGCCAGTACCACGCGACCCCTGAACCCGAACGGTCTCCTGCCG
CAGATCCTCGCCGATAATCGACCGAATCCACCGCGCCAAGTGGACCGAAC
TACCGTCTACGCCGAGCGCCCCACTTACTACTACTGCTACCGACTGATCT
TACTCATGTACTCTATTGCCTTTGAATACGAGAGGAGCAACATGCAATAT
AGCCTGCCAAGACTCGTAGACGACTGGGATCAGGAGCGCTGGTACATGGT
CAATTATCTCAAACCGCGAAACATCAACCGGATTGAGCTTAAGGGACGCC
AGTCACCTATAGCAGTTTCCATGATGAAAGGTGACCGGATGATGATTGTG
ATTCGTGGTACGATTTGGACGGAGGAGTGGTTCAAGGACTTTCAGTACAA
GTGGGCGTATGATCCGGAGAACCTGTTCCCAGGCAAGACACACGAAGGCA
TGTACTCTGTATTCATCGATTTTTATAAGGGACTGGAGGAAGAAGTCGAA
TTAAAAAAGCCCACACACGTCTTGGTAACGGGCCACAGCTTAGGGGCAGG
ATTGGCGAATATGATCGGGTTGCGATTGGAGAACAACATGCAACACAATA
TGCGCGTGGACGTGGTGGGATTTGGGGGCCCCAACACTGGAGACATCGAG
TTTGCCGAGGTGTTCCGCAAGACCGTCAATAGCCGACATATTATTTTCCT
AGGTCGCGGGAATGAGCCGCACTCGCACATGTACACGGCAGGCGACATTA
CTGCGCAATACACCTGCGAGCCTTATCCTGGATGCGACATCCTGTCCACG
GGTCCCTTTGGGTATTTCTACCATTACATTCGCCCGCACAACCAAGTCCC
CTTCTATGCCGAAGAAATGCCGAATCCAAAGAAGTGGAACGAAGTCTCCA
ACATTAGGCGCATCATTCCTTCGACCAAGGGGGTGATTGCTTCGCATCTA
TGTAGTTACATTTGCTGGACTTCTCAGGCTGTCGGGGATTTGGACAGCCG
GTGCTATTTTGCAAATGAGCCGGGCCGGCCTGACTTGCCCCAATCCTACT
ATTGCGACGTGAGTCAGGTTCCCATATAGGCCATATAGATTAATGTATAT
CAGGCTCTTATGTAGACCATATATATTTAGTATATTTAAGGTAGTACTAG
AACGAGGGAGGGAGGGAAGGCGGGACGGCTGGTGGAAGGGGTCAGGCTGG
TTTTGGCAGAATGTACGCGTAAT
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Coding sequence (CDS) from alignment at scaffold_10:143919..146091-

>mRNA_4265 ID=mRNA_4265|Name=jgi.p|Nanoce1779_2|588552|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_10:143919..146091- (Nannochloropsis oceanica)
TCTTGACTGCTTTTTGGGTAGATTTTAGCAAGACTGCCAGTACCACGCGA
CCCCTGAACCCGAACGGTCTCCTGCCGCAGATCCTCGCCGATAATCGACC
GAATCCACCGCGCCAAGTGGACCGAACTACCGTCTACGCCGAGCGCCCCA
CTTACTACTACTGCTACCGACTGATCTTACTCATGTACTCTATTGCCTTT
GAATACGAGAGGAGCAACATGCAATATAGCCTGCCAAGACTCGTAGACGA
CTGGGATCAGGAGCGCTGGTACATGGTCAATTATCTCAAACCGCGAAACA
TCAACCGGATTGAGCTTAAGGGACGCCAGTCACCTATAGCAGTTTCCATG
ATGAAAGGTGACCGGATGATGATTGTGATTCGTGGTACGATTTGGACGGA
GGAGTGGTTCAAGGACTTTCAGTACAAGTGGGCGTATGATCCGGAGAACC
TGTTCCCAGGCAAGACACACGAAGGCATGTACTCTGTATTCATCGATTTT
TATAAGGGACTGGAGGAAGAAGTCGAATTAAAAAAGCCCACACACGTCTT
GGTAACGGGCCACAGCTTAGGGGCAGGATTGGCGAATATGATCGGGTTGC
GATTGGAGAACAACATGCAACACAATATGCGCGTGGACGTGGTGGGATTT
GGGGGCCCCAACACTGGAGACATCGAGTTTGCCGAGGTGTTCCGCAAGAC
CGTCAATAGCCGACATATTATTTTCCTAGGTCGCGGGAATGAGCCGCACT
CGCACATGTACACGGCAGGCGACATTACTGCGCAATACACCTGCGAGCCT
TATCCTGGATGCGACATCCTGTCCACGGGTCCCTTTGGGTATTTCTACCA
TTACATTCGCCCGCACAACCAAGTCCCCTTCTATGCCGAAGAAATGCCGA
ATCCAAAGAAGTGGAACGAAGTCTCCAACATTAGGCGCATCATTCCTTCG
ACCAAGGGGGTGATTGCTTCGCATCTATGTAGTTACATTTGCTGGACTTC
TCAGGCTGTCGGGGATTTGGACAGCCGGTGCTATTTTGCAAATGAGCCGG
GCCGGCCTGACTTGCCCCAATCCTACTATTGCGACGTGAGTCAGGTTCCC
ATATAGATGCAACAACTCATAGACGAGGCCCTGGCGGGAGAGTGGGGTTT
CCGGCTTCTGGAGCCATTCATGGTCTACAATGAAAGTCATGTCACGCCCC
AGAATCATGACCCATGGTTTCCGGGCTGCCCTGTCTTTGACAACCTCAAC
ATAAACGCCCACTTTGGCTGCCACTTTATCCGACTCTGCAAAGATGTCTT
GACTGCTTTTTGGGTAGATTTTAGCAAGACTGCCAGTACCACGCGACCCC
TGAACCCGAACGGTCTCCTGCCGCAGATCCTCGCCGATAATCGACCGAAT
CCACCGCGCCAAGTGGACCGAACTACCGTCTACGCCGAGCGCCCCACTTA
CTACTACTGCTACCGACTGATCTTACTCATGTACTCTATTGCCTTTGAAT
ACGAGAGGAGCAACATGCAATATAGCCTGCCAAGACTCGTAGACGACTGG
GATCAGGAGCGCTGGTACATGGTCAATTATCTCAAACCGCGAAACATCAA
CCGGATTGAGCTTAAGGGACGCCAGTCACCTATAGCAGTTTCCATGATGA
AAGGTGACCGGATGATGATTGTGATTCGTGGTACGATTTGGACGGAGGAG
TGGTTCAAGGACTTTCAGTACAAGTGGGCGTATGATCCGGAGAACCTGTT
CCCAGGCAAGACACACGAAGGCATGTACTCTGTATTCATCGATTTTTATA
AGGGACTGGAGGAAGAAGTCGAATTAAAAAAGCCCACACACGTCTTGGTA
ACGGGCCACAGCTTAGGGGCAGGATTGGCGAATATGATCGGGTTGCGATT
GGAGAACAACATGCAACACAATATGCGCGTGGACGTGGTGGGATTTGGGG
GCCCCAACACTGGAGACATCGAGTTTGCCGAGGTGTTCCGCAAGACCGTC
AATAGCCGACATATTATTTTCCTAGGTCGCGGGAATGAGCCGCACTCGCA
CATGTACACGGCAGGCGACATTACTGCGCAATACACCTGCGAGCCTTATC
CTGGATGCGACATCCTGTCCACGGGTCCCTTTGGGTATTTCTACCATTAC
ATTCGCCCGCACAACCAAGTCCCCTTCTATGCCGAAGAAATGCCGAATCC
AAAGAAGTGGAACGAAGTCTCCAACATTAGGCGCATCATTCCTTCGACCA
AGGGGGTGATTGCTTCGCATCTATGTAGTTACATTTGCTGGACTTCTCAG
GCTGTCGGGGATTTGGACAGCCGGTGCTATTTTGCAAATGAGCCGGGCCG
GCCTGACTTGCCCCAATCCTACTATTGCGACGTGAGTCAGGTTCCCATAT
AGATGCAACAACTCATAGACGAGGCCCTGGCGGGAGAGTGGGGTTTCCGG
CTTCTGGAGCCATTCATGGTCTACAATGAAAGTCATGTCACGCCCCAGAA
TCATGACCCATGGTTTCCGGGCTGCCCTGTCTTTGACAACCTCAACATAA
ACGCCCACTTTGGCTGCCACTTTATCCGACTCTGCAAAGATG
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Synonyms
Publications