jgi.p|Nanoce1779_2|32109, mRNA_5606 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|32109
Unique NamemRNA_5606
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length616
Alignment locationscaffold_11:101014..102136 +

Link to JBrowse

Properties
Property NameValue
TranscriptId32195
TrackFilteredModels2
ProteinId32109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:101014..102136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32109gene_5606Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32109mRNA_5606-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5606CDS_5606Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5606 ID=mRNA_5606|Name=jgi.p|Nanoce1779_2|32109|organism=Nannochloropsis oceanica|type=mRNA|length=616bp
AACAGGCGAAGGCAGAAGGAGTGTAAAAGCAGAGACGAACGACGTACAAT
CACACTTTTACTATTTATTTCTCCCTCTCTTTCTCTCTCCCTTTCTCTCT
CTCTCTCTCTCCATTTCTCGTGCTTGTGCTGGTGGATGGTGTTAGTATTC
TTATTCTTCCTCCTTTCTTCGACACGAATGAGAGTCCTTCGACCCTCACC
ACAGGCACCTCCTCCTCCCTCCTTCCTCCCTCCTTCACCCCCTTTCTCAC
CATCGAATATACATCGTACACGTACGCCCCTTCCTCCTCCTCCTCCTCCT
CAAGCGCCTCAAACATCGCCTCCCTCACCATCATCGCACACCCCGCCCAT
CCTCCCTCCCTCCCTCCCCTCCTCCCTCCCTCTTCGGCCCATTCCAAGGC
CGTCCGTCCGTCCCAGTCCCTCACCTTCACGTCTGCCCCTGCAGCCAAGA
GACTCGCGGTCGCTTGTACCTCCCCCCTCCATACACATGCCATCAGTGCC
GTCACTCCTCCCTCCCTTGCTCCCACGTTCTTCCGCTGATGATTGATGTT
GGCGCCCTGGGAGAGGATGAGGGAGAGGAGCGCGGAGGCAGGAGGGGAGG
GAGCGTGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|32109

>mRNA_5606-protein ID=mRNA_5606-protein|Name=jgi.p|Nanoce1779_2|32109|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MVLVFLFFLLSSTRMRVLRPSPQAPPPPSFLPPSPPFSPSNIHRTRTPLP
PPPPPQAPQTSPPSPSSHTPPILPPSLPSSLPLRPIPRPSVRPSPSPSRL
PLQPRDSRSLVPPPSIHMPSVPSLLPPLLPRSSADD*
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mRNA from alignment at scaffold_11:101014..102136+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5606 ID=mRNA_5606|Name=jgi.p|Nanoce1779_2|32109|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp|location=Sequence derived from alignment at scaffold_11:101014..102136+ (Nannochloropsis oceanica)
AACAGGCGAAGGCAGAAGGAGTGTAAAAGCAGAGACGAACGACGTACAAT
CACACTTTTACTATTTATTTCTCCCTCTCTTTCTCTCTCCCTTTCTCTCT
CTCTCTCTCTCCATTTCTCGTGCTTGTGCTGGTGGATGGTGTTAGTATTC
TTATTCTTCCTCCTCCCCCTCCTCTTCCTCTTCCTCTTCCCCCTCCCCCT
TTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCC
TCCTCACTCTCTCCCCTTCCAATCACCATCATCCTTCCTCCCATCCCCAG
ACATCCAGTCGCCCCGCCCCAAAACCTTCTCCTCCCTCTTATCCTCCCTT
TCCCCCTTCCTCTCTCTTCCTCCTCCCCCTCTTCCTCCTCTTCCTCACTA
CTCCCACTCCTCAGACGGTACCTCCCTCCCAGCCCCGCCCCCTTCCCCTC
GCTCCCTTCCCTCCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGC
TCTCCTCTTCCGGGTAGTCATTTGCCCAGTGCCCTTCCTCGTTCGAGTCC
TCCTCTTCTCCCCCTCCCTCCCCCCCCGTCCTCGTCCTCACTCCAACCCC
CCCCCTCCTCAAACACCAACACATCCTCCCCCTCTTCCTCCTCGCCCTCC
TTCCCTCCTTCCCTTCCTCCCTTCTTCGACACGAATGAGAGTCCTTCGAC
CCTCACCACAGGCACCTCCTCCTCCCTCCTTCCTCCCTCCTTCACCCCCT
TTCTCACCATCGAATATACATCGTACACGTACGCCCCTTCCTCCTCCTCC
TCCTCCTCAAGCGCCTCAAACATCGCCTCCCTCACCATCATCGCACACCC
CGCCCATCCTCCCTCCCTCCCTCCCCTCCTCCCTCCCTCTTCGGCCCATT
CCAAGGCCGTCCGTCCGTCCCAGTCCCTCACCTTCACGTCTGCCCCTGCA
GCCAAGAGACTCGCGGTCGCTTGTACCTCCCCCCTCCATACACATGCCAT
CAGTGCCGTCACTCCTCCCTCCCTTGCTCCCACGTTCTTCCGCTGATGAT
TGATGTTGGCGCCCTGGGAGAGGATGAGGGAGAGGAGCGCGGAGGCAGGA
GGGGAGGGAGCGTGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_11:101014..102136+

>mRNA_5606 ID=mRNA_5606|Name=jgi.p|Nanoce1779_2|32109|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_11:101014..102136+ (Nannochloropsis oceanica)
ATGGTGTTAGTATTCTTATTCTTCCTCCTTTCTTCGACACGAATGAGAGT
CCTTCGACCCTCACCACAGGCACCTCCTCCTCCCTCCTTCCTCCCTCCTT
CACCCCCTTTCTCACCATCGAATATACATCGTACACGTACGCCCCTTCCT
CCTCCTCCTCCTCCTCAAGCGCCTCAAACATCGCCTCCCTCACCATCATC
GCACACCCCGCCCATCCTCCCTCCCTCCCTCCCCTCCTCCCTCCCTCTTC
GGCCCATTCCAAGGCCGTCCGTCCGTCCCAGTCCCTCACCTTCACGTCTG
CCCCTGCAGCCAAGAGACTCGCGGTCGCTTGTACCTCCCCCCTCCATACA
CATGCCATCAGTGCCGTCACTCCTCCCTCCCTTGCTCCCACGTTCTTCCG
CTGATGATTGAATGGTGTTAGTATTCTTATTCTTCCTCCTTTCTTCGACA
CGAATGAGAGTCCTTCGACCCTCACCACAGGCACCTCCTCCTCCCTCCTT
CCTCCCTCCTTCACCCCCTTTCTCACCATCGAATATACATCGTACACGTA
CGCCCCTTCCTCCTCCTCCTCCTCCTCAAGCGCCTCAAACATCGCCTCCC
TCACCATCATCGCACACCCCGCCCATCCTCCCTCCCTCCCTCCCCTCCTC
CCTCCCTCTTCGGCCCATTCCAAGGCCGTCCGTCCGTCCCAGTCCCTCAC
CTTCACGTCTGCCCCTGCAGCCAAGAGACTCGCGGTCGCTTGTACCTCCC
CCCTCCATACACATGCCATCAGTGCCGTCACTCCTCCCTCCCTTGCTCCC
ACGTTCTTCCGCTGATGATTGA
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Synonyms
Publications