jgi.p|Nanoce1779_2|33249, mRNA_5637 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|33249
Unique NamemRNA_5637
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1510
Alignment locationscaffold_11:186395..188777 -

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Properties
Property NameValue
TranscriptId33335
TrackFilteredModels2
ProteinId33249
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:186395..188777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|33249gene_5637Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|33249mRNA_5637-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5637CDS_5637Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5637 ID=mRNA_5637|Name=jgi.p|Nanoce1779_2|33249|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
TCTCACGCGTGTCCCCCTCCTTCTAAGCACAGGTAGCCGCAGGGGCAAGA
GGAGCAGTACCACGCACCACCCCTTTCTCTTTTCAATCGTACAACAGCCA
GGACGGGGACCACGGGCCATGATCTAGACGAACAACAATCAGCATCAGTA
GGATCAGTAGGATCAGTAGGATCAATAGCAGTGCAGTGCTGAACCTCTCC
TGAAAACTACAACCCCAACAAAAATGGTGCTCCAAAGCATAGTCGACCGG
CTGAAAGGAGCCCGCGAAGTAACGATCAAGCGGTTGTATAAATTAGTCCT
CCGCAAAGCCCTGGGCAATTTCCTAGCAGGTCAGCTGGGGGTCGATCAGC
TCGACGTAAAGCTCATCGTCCTTGAGGACACCCCTTCCTCCCCCGGTACC
TTCCCCTCATCCACCCGGCAAGGCTGTGTACAATTAACTGATTTAGAGAT
AAATGTTGACCCGTTAAATGGTTTTTTGGCGTCTCAACCATTGCAATTGC
ATAAAGGGAGGATTGGGAAGGTGGAAGTGACAGTGTGTTATGAGAAGCTG
TTGACAGAAGGGCTTAGGATTGTTCTGGAAGATGTCGAGTTGGTATTGGT
GCGACGCAAACCAGAAAAGGGTGATGAGAAGGGAAGAAATATTGGGAGAG
TGGCAGAGGTGAGGAGGAAGACGAAAAGGGAGGAGGAGAAGGAGAAGATG
GAAATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAACAGGAGGAGGAGCAG
TAGCAGCAGCAGGGGCAGTGAAGATGCTAGCATTATCGCAGAATGGATCG
AACAGATCACGACGCAGCTTCGCGTGGAGGTGAAGGGATTGAAGGTCCGC
CTCGTGGAAGATCCCGCCCAAACGTCCGCCCCGTCCTTGTCTTTGCTTGT
CCGTCGTGCGCACTACGAAGACGTCACGGCCAGATATCGAGGGGGAGGGG
GCGGGAGGGAAGGAGGAGGGGACGCGGATGGTCTCACTGGCCCCTCTCTC
CCGCCCTCCTCCTCCTGGGAGGTGTCGCATAAGCGAGTGCGGTTCGAAGG
TGTGGAGGTGTGGTTGGAACGAGGGAGGGAGGGGAGGGGGCCACCGTTTG
CGGCACTGGGAAGAGGAGGGGGAGGAGGAGGGAAAGGAAGAAGAAGAGGA
GGGCGACACCTAAATAATGGGAATGGACAGAGCGAGGAGGAGGAGGAGGA
GGAGGACGACGACGAAAATTCCATCAGTGCAACTGCCTCTTCCTTTCCTC
CCCCCCCGCCCGTCCTTCTCCTCCTCCTCCTCCTCCCTCCGCCTGTTGGA
AGTAACGGACGAGGGTCAGTTGGACGTTAAGATCGGGCATTCCACTCGTC
CGGCCCAAGCCGCCAAGCTGGACTTCCGTCTGCAGATCAAGCACATCCTT
CTTTCCGTCTCCCCCTCCCTCCTTCAAGACCTCCTTTTTCTCTACTCCTC
TTGCTCTGCCTTCCCGGGAAAGGACACGAGGGAGCGAGGGAGGGAGGGAG
GGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|33249

>mRNA_5637-protein ID=mRNA_5637-protein|Name=jgi.p|Nanoce1779_2|33249|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MVLQSIVDRLKGAREVTIKRLYKLVLRKALGNFLAGQLGVDQLDVKLIVL
EDTPSSPGTFPSSTRQGCVQLTDLEINVDPLNGFLASQPLQLHKGRIGKV
EVTVCYEKLLTEGLRIVLEDVELVLVRRKPEKGDEKGRNIGRVAEVRRKT
KREEEKEKMEMVEAKAKEAANRRRSSSSSRGSEDASIIAEWIEQITTQLR
VEVKGLKVRLVEDPAQTSAPSLSLLVRRAHYEDVTARYRGGGGGREGGGD
ADGLTGPSLPPSSSWEVSHKRVRFEGVEVWLERGREGRGPPFAALGRGGG
GGGKGRRRGGRHLNNGNGQSEEEEEEEDDDENSISATASSFPPPPPVLLL
LLLLPPPVGSNGRGSVGR*
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mRNA from alignment at scaffold_11:186395..188777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5637 ID=mRNA_5637|Name=jgi.p|Nanoce1779_2|33249|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_11:186395..188777- (Nannochloropsis oceanica)
TCTCACGCGTGTCCCCCTCCTTCTAAGCACAGGTAGCCGCAGGGGCAAGA
GGAGCAGTACCACGCACCACCCCTTTCTCTTTTCAATCGTACAACAGCCA
GGACGGGGACCACGGGCCATGATCTAGACGAACAACAATCAGCATCAGTA
GGATCAGTAGGATCAGTAGGATCAATAGCAGTGCAGTGCTGAACCTCTCC
TGAAAACTACAACCCCAACAAAAATGGTGCTCCAAAGCATAGTCGACCGG
CTGAAAGGAGCCCGCGAAGTAACGATCAAGCGGTTGTATAAATTAGTCCT
CCGCAAAGCCCTGGGCAATTTCCTAGCAGGTCAGCTGGGGGTCGATCAGC
TCGACGTAAAGCTCATCGTCCTTGAGGACACCCCTTCCTCCCCCGGTACC
TTCCCCTCATCCACCCGGCAAGGCTGTGTACAATTAACTGATTTAGAGAT
AAATGTTGACCCGTTAAATGGTTTTTTGGCGTCTCAACCATTGCAATTGC
ATAAAGGGAGGATTGGGAAGGTGGAAGTGACAGTGTGTTATGAGAAGCTG
TTGACAGAAGGGCTTAGGATTGTTCTGGAAGATGTCGAGTTGGTATTGGT
GCGACGCAAACCAGAAAAGGGTGATGAGAAGGGAAGAAATATTGGGAGAG
TGGCAGAGGTGAGGAGGAAGACGAAAAGGGAGGAGGAGAAGGAGAAGATG
GAAATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAACAGGAGGAGGAGCAG
TAGCAGCAGCAGGGGCAGTGAAGATGCTAGCATTATCGCAGAATGGATCG
AACAGATCACGACGCAGCTTCGCGTGGAGGTGAAGGGATTGAAGGTCCGC
CTCGTGGAAGGTACGTCCCTTTCTCACTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTTCCTGAGCGGATCGGGGTAGAACTCAATAGCTTTCATCCC
TCCCTCCTTTCCCTCCCTTTTCACCTGAATTGTACGTGGATCGCATGGAC
TTCACCTCCACACTGTTAACCCTAACCCTAATTAACGCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCACCATCCCTCTTTCCAGATCCCGCCCAAACGT
CCGCCCCGTCCTTGTCTTTGCTTGTCCGTCGTGCGCACTACGAAGACGTC
ACGGCCAGATATCGAGGGGGAGGGGGCGGGAGGGAAGGAGGAGGGGACGC
GGATGGTCTCACTGGCCCCTCTCTCCCGCCCTCCTCCTCCTGGGAGGTGT
CGCATAAGCGAGTGCGGTTCGAAGGTGTGGAGGTGTGGTTGGAACGAGGG
AGGGAGGGGAGGGGGCCACCGTTTGCGGCACTGGGAAGAGGAGGGGGAGG
AGGAGGGAAAGGAAGAAGAAGAGGAGGGCGACACCTAAATAATGGGAATG
GACAGAGCGAGGAGGAGGAGGAGGAGGAGGACGACGACGAAAATTCCATC
AGTGCAACTGCCTCTTCCTTTCCTCCCCCCCCGCCCGTCCTTCTCCTCCT
CCTCCTCCTCCCTCCGCCTGTTGGAAGTAACGGACGAGGGTCAGTTGGAC
GTTAAGATCGGGCATTCCACTCGTCCGGCCCAAGCCGCCAAGCTGGACTT
CCGTCTGCAGGTACCTCCCGCCCTCCTTTCCCCCCAAAAAAATAACCCTC
CCGGCCCAATCCCAACTCGACCACCGTCTCTCGCATACTTAAAAAAGCGA
AAAAAAAAAAAAAAACAAAAAAAAAATCAAGAAAGAGAGGGAAAAAAGAG
ACCGGAAAAAAGAAAGGTAGAAAAAGGTAAAACAGAAGGAAAGAAAACTA
ATACAAAAAAAAAAACAAAAAAGGACAGAAAAAAAAGAAAACTCAATCTC
GCCACCTAACCGAAAATTCCTCTCCTTTCTTCTCCGACTCCATCACCTCC
TCCCCTCCCCCCCTCGTCCCTCCCGCCCTCTACTTCTCCTTCTCTTCATT
CCTTCAAACCCCGCCCTTTTCCCTCCTTTCCCCCTCCTTCCCTCCCTCCC
CCTACCCCACATCTCTCCCCCCCCCGCCCTCTACTTCCTCCTTCTCTTCA
TCTCGTCACCCTCCTTTCTCCTCCTTCCATCTCCTCTCCCTCCCCCTCCC
CCCCCTTCCTCCGCCCTCCTCTCCATACCCTCCCTCCCTCCCCCCTTCCT
CCCTCCCCCCCTGCCCGCCCTCTACTTTCCTCCTTCTTCTTCATCTCGCT
TCACCCCTCCCTTTCTCCCTCCTTTCCTCCCTCCCTCCCCCCTCTTCCCT
TATATCAGATCAAGCACATCCTTCTTTCCGTCTCCCCCTCCCTCCTTCAA
GACCTCCTTTTTCTCTACTCCTCTTGCTCTGCCTTCCCGGGAAAGGACAC
GAGGGAGCGAGGGAGGGAGGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_11:186395..188777-

>mRNA_5637 ID=mRNA_5637|Name=jgi.p|Nanoce1779_2|33249|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_11:186395..188777- (Nannochloropsis oceanica)
ATCCCGCCCAAACGTCCGCCCCGTCCTTGTCTTTGCTTGTCCGTCGTGCG
CACTACGAAGACGTCACGGCCAGATATCGAGGGGGAGGGGGCGGGAGGGA
AGGAGGAGGGGACGCGGATGGTCTCACTGGCCCCTCTCTCCCGCCCTCCT
CCTCCTGGGAGGTGTCGCATAAGCGAGTGCGGTTCGAAGGTGTGGAGGTG
TGGTTGGAACGAGGGAGGGAGGGGAGGGGGCCACCGTTTGCGGCACTGGG
AAGAGGAGGGGGAGGAGGAGGGAAAGGAAGAAGAAGAGGAGGGCGACACC
TAAATAATGGGAATGGACAGAGCGAGGAGGAGGAGGAGGAGGAGGACGAC
GACGAAAATTCCATCAGTGCAACTGCCTCTTCCTTTCCTCCCCCCCCGCC
CGTCCTTCTCCTCCTCCTCCTCCTCCCTCCGCCTGTTGGAAGTAACGGAC
GAGGGTCAGTTGGACGTTAAATGGTGCTCCAAAGCATAGTCGACCGGCTG
AAAGGAGCCCGCGAAGTAACGATCAAGCGGTTGTATAAATTAGTCCTCCG
CAAAGCCCTGGGCAATTTCCTAGCAGGTCAGCTGGGGGTCGATCAGCTCG
ACGTAAAGCTCATCGTCCTTGAGGACACCCCTTCCTCCCCCGGTACCTTC
CCCTCATCCACCCGGCAAGGCTGTGTACAATTAACTGATTTAGAGATAAA
TGTTGACCCGTTAAATGGTTTTTTGGCGTCTCAACCATTGCAATTGCATA
AAGGGAGGATTGGGAAGGTGGAAGTGACAGTGTGTTATGAGAAGCTGTTG
ACAGAAGGGCTTAGGATTGTTCTGGAAGATGTCGAGTTGGTATTGGTGCG
ACGCAAACCAGAAAAGGGTGATGAGAAGGGAAGAAATATTGGGAGAGTGG
CAGAGGTGAGGAGGAAGACGAAAAGGGAGGAGGAGAAGGAGAAGATGGAA
ATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAACAGGAGGAGGAGCAGTAG
CAGCAGCAGGGGCAGTGAAGATGCTAGCATTATCGCAGAATGGATCGAAC
AGATCACGACGCAGCTTCGCGTGGAGGTGAAGGGATTGAAGGTCCGCCTC
GTGGAAGATCCCGCCCAAACGTCCGCCCCGTCCTTGTCTTTGCTTGTCCG
TCGTGCGCACTACGAAGACGTCACGGCCAGATATCGAGGGGGAGGGGGCG
GGAGGGAAGGAGGAGGGGACGCGGATGGTCTCACTGGCCCCTCTCTCCCG
CCCTCCTCCTCCTGGGAGGTGTCGCATAAGCGAGTGCGGTTCGAAGGTGT
GGAGGTGTGGTTGGAACGAGGGAGGGAGGGGAGGGGGCCACCGTTTGCGG
CACTGGGAAGAGGAGGGGGAGGAGGAGGGAAAGGAAGAAGAAGAGGAGGG
CGACACCTAAATAATGGGAATGGACAGAGCGAGGAGGAGGAGGAGGAGGA
GGACGACGACGAAAATTCCATCAGTGCAACTGCCTCTTCCTTTCCTCCCC
CCCCGCCCGTCCTTCTCCTCCTCCTCCTCCTCCCTCCGCCTGTTGGAAGT
AACGGACGAGGGTCAGTTGGACGTTAAATGGTGCTCCAAAGCATAGTCGA
CCGGCTGAAAGGAGCCCGCGAAGTAACGATCAAGCGGTTGTATAAATTAG
TCCTCCGCAAAGCCCTGGGCAATTTCCTAGCAGGTCAGCTGGGGGTCGAT
CAGCTCGACGTAAAGCTCATCGTCCTTGAGGACACCCCTTCCTCCCCCGG
TACCTTCCCCTCATCCACCCGGCAAGGCTGTGTACAATTAACTGATTTAG
AGATAAATGTTGACCCGTTAAATGGTTTTTTGGCGTCTCAACCATTGCAA
TTGCATAAAGGGAGGATTGGGAAGGTGGAAGTGACAGTGTGTTATGAGAA
GCTGTTGACAGAAGGGCTTAGGATTGTTCTGGAAGATGTCGAGTTGGTAT
TGGTGCGACGCAAACCAGAAAAGGGTGATGAGAAGGGAAGAAATATTGGG
AGAGTGGCAGAGGTGAGGAGGAAGACGAAAAGGGAGGAGGAGAAGGAGAA
GATGGAAATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAACAGGAGGAGGA
GCAGTAGCAGCAGCAGGGGCAGTGAAGATGCTAGCATTATCGCAGAATGG
ATCGAACAGATCACGACGCAGCTTCGCGTGGAGGTGAAGGGATTGAAGGT
CCGCCTCGTGGAAG
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Synonyms
Publications