jgi.p|Nanoce1779_2|589982, mRNA_5685 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589982
Unique NamemRNA_5685
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2356
Alignment locationscaffold_11:319070..321425 -

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Properties
Property NameValue
TranscriptId590068
TrackFilteredModels2
ProteinId589982
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:319070..321425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589982gene_5685Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589982mRNA_5685-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5685CDS_5685Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5685 ID=mRNA_5685|Name=jgi.p|Nanoce1779_2|589982|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp
AGATCAAGATCAAGACACCATCAATCGTTCCCAAACCGGCTACAATGACA
ACGAGGCAACTGCGGCTGTTGAGACGAAAGACGACGAGGCCAAGCTCGCG
CACAAATTTGTCCTAGAAAGACAAAGGGTCCGGATGCGAGACGAGCTGGC
CAAGAAACGATTGAAAGAGGCAAGTTTACTGTCGCAAGTGGACGAATTGA
GTGATGAGGTCCGACGTTTGGAAAAGGAGGTGAAGAACAAGGACGCCATA
TTGAACGAGTGTGTGGAAAGATTGCATGAGCAGGGAGTAAGCTTGGGGCG
CTTGCAACGAGAGAAGGAAGAAACGGAAGAAATTTTAGATGTAGCCGCTG
ACACCATCCGAGAGACACGAGCACAGGTGAAGCTGCTGGAAGAATGGGGG
CCTCTGGCCAATGTGTTGGATTGTGTACGCCGTTTGGTAGGGATGGGCGG
CAGGGAAGTGGACGAGAAGAAGGAAGGAACGACGGCGGCTGAGGGGACTG
TGGTGTCTGCCTACAGGGCGTTTTCAATGTTACTACTCTTCTCGCTCGTC
TTTTCCATCGCCATCATTTACCTAGTGATTCCAAGTCGCTTTCTCCCGTT
CCGTCCTGTTCATCAATACCATTGTCGAGTAAGCAGCATGACCGCCTTGA
TGCCCGGTGGTCCTGCACTGGAAACTGGTGAATACCTGACCAACTGTCGT
CACCCCTGGCTCTTCGCTGCTGGACTTGGAGGTGGAAGTAAAAGTGAAAT
AGACGGGTGCGCAACCCCTCATTTCTTGTGGATGCAGGACGATGGGCTGT
TGGTTTTGTATCAAGGCTGGTCGCCGCACCACCACGGAGGACCTGTATGG
GCGACTCACCCCGTGGATGTGACGACAGTGGCAGGGTATAAACCTATAAA
GCACTTGGGAGGAAAAGGTGAGGATAGCATGACTGGAGGAGGAGGACAAG
GCAGAAGGATTGTGAGGGCGTTGGTCGACGAGCGGAAAGTCTTGAAACTG
GTGAGGTTTATGGAAGGTAGTGGGGCGGAGGTGGTGGTCTTTCGCAGGGC
TTTGAAAAAGCTGCCCGCAAGCTTGGTGCCTTGGCCGTTTGAAGAATCAT
GATGCGGGTAGAGCAGGGAGTACCAATTGATGAAGGATGTGCATACAAAA
GTACGGAAAGGGTATTGCATGGCCTGGGATGACCATGGTACAAGACGCAA
GCGATAGGATCAACCTGAAAGAGTATAAATAACATGTTTATCTTGAACGA
TTGCAAAACGACGAATTCTGACGATAGTTTCGTTTGCTTTCCGCTTTCCG
AAAGCTCGAGAAGTGCCTTGAGAAGCGCAGTGCATGTGGAAGCCAGCAAT
GGCATTCGACAGAGTTCGAGCCCGAGGATGAATTAAGCTTAGCAGCCATC
CAACGAAGAAGCAACCACCCCATACTCTGACTCACGCCTTAAATATATAC
CTAGTTGCTTGTAAATACCAAATACACAGGGCAACAATATAACAGCAACA
ATAAGAACAACAAACTCCAAAATTAGGGAAGAATGTGCAACAATATTAGT
GGAGGGCCTTCCCTCGTGTGCCACAATCCTAGGTGTAGGCACGCTTATGT
AAACACCTGTACCACATGCGGATAGGTTGCACGCGGCCCATGGACCGCGC
TTTGCGTGCGCGCTGAGTGCGCTCTTTAACTCATCCTTTATCTGGCGAGG
CAGACGAGGCCGGGCACCAGTTGAAGGCAAGAGCGACTCTTTGAGCTGTA
TCCAGCTAGCCTTTGTCCAGCCCCCTGCCCCTACCGCAATCTCTTGTTTG
CCTGCCAACTTCAAGCCCGCCATGCGCCGCAACGCGTGTGGTGGTGTTGT
CGATGGTGTGGAGCGGGATGGAAAAGGTGTGTATGATGTTGTGTATTGAC
GACAGCATCTTATTGCTCAGCCTTCACGCTGCTTCTCTCCCCGCTGGAGT
CCTACACGGTAGCAATGGACACGCCCTTGTCGGCCCACCCGACCCACAGA
CCAAGCCTGAAAGCAAGAAAATACTTGATACAACGCGTGTAGATCTGATC
GGCCCCGTGGGTGGAGCTGCAGTTGCACTGGTGCTGGGTCTTTGGGCAGC
GTCTGAAGCTCCACCTGTCCGACAAGTTTTGTCCCTCCTCTCGTTGACTG
AAGCCAACAATGCGTTTACACAATACTACCGCGGCCAATGTGGTAGAAAT
GACACTGATGTTTTGTTTAATGAGGGGTGGCTATTATTTTGCTCGACCAA
CTCTAACTTCCGCCCCTTTCTTTCCTTCCTCTCTCGCCCTCCTAACACAG
GCGTCCCGCCATACACAATCACCATGAAGTGCATCATCGCCCTCCTCCTT
GCCGCC
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protein sequence of jgi.p|Nanoce1779_2|589982

>mRNA_5685-protein ID=mRNA_5685-protein|Name=jgi.p|Nanoce1779_2|589982|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MRDELAKKRLKEASLLSQVDELSDEVRRLEKEVKNKDAILNECVERLHEQ
GVSLGRLQREKEETEEILDVAADTIRETRAQVKLLEEWGPLANVLDCVRR
LVGMGGREVDEKKEGTTAAEGTVVSAYRAFSMLLLFSLVFSIAIIYLVIP
SRFLPFRPVHQYHCRVSSMTALMPGGPALETGEYLTNCRHPWLFAAGLGG
GSKSEIDGCATPHFLWMQDDGLLVLYQGWSPHHHGGPVWATHPVDVTTVA
GYKPIKHLGGKGEDSMTGGGGQGRRIVRALVDERKVLKLVRFMEGSGAEV
VVFRRALKKLPASLVPWPFEES*
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mRNA from alignment at scaffold_11:319070..321425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5685 ID=mRNA_5685|Name=jgi.p|Nanoce1779_2|589982|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at scaffold_11:319070..321425- (Nannochloropsis oceanica)
AGATCAAGATCAAGACACCATCAATCGTTCCCAAACCGGCTACAATGACA
ACGAGGCAACTGCGGCTGTTGAGACGAAAGACGACGAGGCCAAGCTCGCG
CACAAATTTGTCCTAGAAAGACAAAGGGTCCGGATGCGAGACGAGCTGGC
CAAGAAACGATTGAAAGAGGCAAGTTTACTGTCGCAAGTGGACGAATTGA
GTGATGAGGTCCGACGTTTGGAAAAGGAGGTGAAGAACAAGGACGCCATA
TTGAACGAGTGTGTGGAAAGATTGCATGAGCAGGGAGTAAGCTTGGGGCG
CTTGCAACGAGAGAAGGAAGAAACGGAAGAAATTTTAGATGTAGCCGCTG
ACACCATCCGAGAGACACGAGCACAGGTGAAGCTGCTGGAAGAATGGGGG
CCTCTGGCCAATGTGTTGGATTGTGTACGCCGTTTGGTAGGGATGGGCGG
CAGGGAAGTGGACGAGAAGAAGGAAGGAACGACGGCGGCTGAGGGGACTG
TGGTGTCTGCCTACAGGGCGTTTTCAATGTTACTACTCTTCTCGCTCGTC
TTTTCCATCGCCATCATTTACCTAGTGATTCCAAGTCGCTTTCTCCCGTT
CCGTCCTGTTCATCAATACCATTGTCGAGTAAGCAGCATGACCGCCTTGA
TGCCCGGTGGTCCTGCACTGGAAACTGGTGAATACCTGACCAACTGTCGT
CACCCCTGGCTCTTCGCTGCTGGACTTGGAGGTGGAAGTAAAAGTGAAAT
AGACGGGTGCGCAACCCCTCATTTCTTGTGGATGCAGGACGATGGGCTGT
TGGTTTTGTATCAAGGCTGGTCGCCGCACCACCACGGAGGACCTGTATGG
GCGACTCACCCCGTGGATGTGACGACAGTGGCAGGGTATAAACCTATAAA
GCACTTGGGAGGAAAAGGTGAGGATAGCATGACTGGAGGAGGAGGACAAG
GCAGAAGGATTGTGAGGGCGTTGGTCGACGAGCGGAAAGTCTTGAAACTG
GTGAGGTTTATGGAAGGTAGTGGGGCGGAGGTGGTGGTCTTTCGCAGGGC
TTTGAAAAAGCTGCCCGCAAGCTTGGTGCCTTGGCCGTTTGAAGAATCAT
GATGCGGGTAGAGCAGGGAGTACCAATTGATGAAGGATGTGCATACAAAA
GTACGGAAAGGGTATTGCATGGCCTGGGATGACCATGGTACAAGACGCAA
GCGATAGGATCAACCTGAAAGAGTATAAATAACATGTTTATCTTGAACGA
TTGCAAAACGACGAATTCTGACGATAGTTTCGTTTGCTTTCCGCTTTCCG
AAAGCTCGAGAAGTGCCTTGAGAAGCGCAGTGCATGTGGAAGCCAGCAAT
GGCATTCGACAGAGTTCGAGCCCGAGGATGAATTAAGCTTAGCAGCCATC
CAACGAAGAAGCAACCACCCCATACTCTGACTCACGCCTTAAATATATAC
CTAGTTGCTTGTAAATACCAAATACACAGGGCAACAATATAACAGCAACA
ATAAGAACAACAAACTCCAAAATTAGGGAAGAATGTGCAACAATATTAGT
GGAGGGCCTTCCCTCGTGTGCCACAATCCTAGGTGTAGGCACGCTTATGT
AAACACCTGTACCACATGCGGATAGGTTGCACGCGGCCCATGGACCGCGC
TTTGCGTGCGCGCTGAGTGCGCTCTTTAACTCATCCTTTATCTGGCGAGG
CAGACGAGGCCGGGCACCAGTTGAAGGCAAGAGCGACTCTTTGAGCTGTA
TCCAGCTAGCCTTTGTCCAGCCCCCTGCCCCTACCGCAATCTCTTGTTTG
CCTGCCAACTTCAAGCCCGCCATGCGCCGCAACGCGTGTGGTGGTGTTGT
CGATGGTGTGGAGCGGGATGGAAAAGGTGTGTATGATGTTGTGTATTGAC
GACAGCATCTTATTGCTCAGCCTTCACGCTGCTTCTCTCCCCGCTGGAGT
CCTACACGGTAGCAATGGACACGCCCTTGTCGGCCCACCCGACCCACAGA
CCAAGCCTGAAAGCAAGAAAATACTTGATACAACGCGTGTAGATCTGATC
GGCCCCGTGGGTGGAGCTGCAGTTGCACTGGTGCTGGGTCTTTGGGCAGC
GTCTGAAGCTCCACCTGTCCGACAAGTTTTGTCCCTCCTCTCGTTGACTG
AAGCCAACAATGCGTTTACACAATACTACCGCGGCCAATGTGGTAGAAAT
GACACTGATGTTTTGTTTAATGAGGGGTGGCTATTATTTTGCTCGACCAA
CTCTAACTTCCGCCCCTTTCTTTCCTTCCTCTCTCGCCCTCCTAACACAG
GCGTCCCGCCATACACAATCACCATGAAGTGCATCATCGCCCTCCTCCTT
GCCGCC
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Coding sequence (CDS) from alignment at scaffold_11:319070..321425-

>mRNA_5685 ID=mRNA_5685|Name=jgi.p|Nanoce1779_2|589982|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_11:319070..321425- (Nannochloropsis oceanica)
ATGCGAGACGAGCTGGCCAAGAAACGATTGAAAGAGGCAAGTTTACTGTC
GCAAGTGGACGAATTGAGTGATGAGGTCCGACGTTTGGAAAAGGAGGTGA
AGAACAAGGACGCCATATTGAACGAGTGTGTGGAAAGATTGCATGAGCAG
GGAGTAAGCTTGGGGCGCTTGCAACGAGAGAAGGAAGAAACGGAAGAAAT
TTTAGATGTAGCCGCTGACACCATCCGAGAGACACGAGCACAGGTGAAGC
TGCTGGAAGAATGGGGGCCTCTGGCCAATGTGTTGGATTGTGTACGCCGT
TTGGTAGGGATGGGCGGCAGGGAAGTGGACGAGAAGAAGGAAGGAACGAC
GGCGGCTGAGGGGACTGTGGTGTCTGCCTACAGGGCGTTTTCAATGTTAC
TACTCTTCTCGCTCGTCTTTTCCATCGCCATCATTTACCTAGTGATTCCA
AGTCGCTTTCTCCCGTTCCGTCCTGTTCATCAATACCATTGTCGAGTAAG
CAGCATGACCGCCTTGATGCCCGGTGGTCCTGCACTGGAAACTGGTGAAT
ACCTGACCAACTGTCGTCACCCCTGGCTCTTCGCTGCTGGACTTGGAGGT
GGAAGTAAAAGTGAAATAGACGGGTGCGCAACCCCTCATTTCTTGTGGAT
GCAGGACGATGGGCTGTTGGTTTTGTATCAAGGCTGGTCGCCGCACCACC
ACGGAGGACCTGTATGGGCGACTCACCCCGTGGATGTGACGACAGTGGCA
GGGTATAAACCTATAAAGCACTTGGGAGGAAAAGGTGAGGATAGCATGAC
TGGAGGAGGAGGACAAGGCAGAAGGATTGTGAGGGCGTTGGTCGACGAGC
GGAAAGTCTTGAAACTGGTGAGGTTTATGGAAGGTAGTGGGGCGGAGGTG
GTGGTCTTTCGCAGGGCTTTGAAAAAGCTGCCCGCAAGCTTGGTGCCTTG
GCCGTTTGAAGAATCATGA
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Synonyms
Publications